Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01256 and BPUM_0691
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_01256___yfmR.1.24716.seq
# -bsequence dna-align/BPUM_0691___yfmR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01256___yfmR-BPUM_0691___yfmR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01256___yfmR-BPUM_0691___yfmR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01256___yfmR
# 2: BPUM_0691___yfmR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1973
# Identity: 1357/1973 (68.8%)
# Similarity: 1357/1973 (68.8%)
# Gaps: 172/1973 ( 8.7%)
# Score: 4438.5
#
#
#=======================================
BSNT_01256___ 1 ATGAGCATATTAAAAGCGGAA-AATCTTTATAAAACATACGGAGATAAAA 49
|||||..||||.||.|..||| .|| |.||||||||.||.||.||.||||
BPUM_0691___y 1 ATGAGTTTATTGAATGTAGAAGGAT-TATATAAAACCTATGGCGAGAAAA 49
BSNT_01256___ 50 CATTATTTGACCATATCTCCTTTCATATTGAAGAGAATGAGAGAATCGGA 99
|..|.|||||.|||||.||.||||||||.|||...||.||..|.|||||.
BPUM_0691___y 50 CGCTGTTTGATCATATTTCTTTTCATATAGAACCAAAGGAACGCATCGGG 99
BSNT_01256___ 100 TTAATCGGGCCGAACGGAACTGGAAAATCAACGCTGCTGAAAGTGATTGC 149
|||||.||.||.||||||||.||.||.||||||||.||.||.||.|||||
BPUM_0691___y 100 TTAATTGGACCAAACGGAACAGGGAAGTCAACGCTCCTAAAGGTCATTGC 149
BSNT_01256___ 150 CGG-CTTGGAATCTATCGAAGAAGGAGAAATCACGAAATCCGGAAGCGTG 198
.|| ||| |||||..|.||.|||||.||.|||||||| .|
BPUM_0691___y 150 AGGACTT-GAATCGTTTGAGGAAGGTGACATCACGAA-----------GG 187
BSNT_01256___ 199 CAGG-----------TCGAATTTCTTCATCAAGACCCGGAGCTGCCTGCG 237
|||| |||||||||||.|.||.|||||.||..||..||.|
BPUM_0691___y 188 CAGGGACACTCGATATCGAATTTCTTGAGCAGGACCCTGAAATGGATGGG 237
BSNT_01256___ 238 GGGCAAACAGTGCTGGAGCATATCTATTCCGGTGAATCGGCTGTGATGA- 286
|...||||..|.||.||..|.||.|.||| ||.|.|.||...|||||
BPUM_0691___y 238 GATGAAACGATTCTCGATTACATTTTTTC---TGGAACAGCACCGATGAT 284
BSNT_01256___ 287 --AAACCTTGCGTGAATATGAAAAAGCGCTGTATGAACTGGGGAAAGATC 334
||||..||...|.|||||||.|.||.||....||..|.|.|.|.||||
BPUM_0691___y 285 TCAAACGATGAAGGCATATGAACAGGCACTCGCCGATTTAGAGCATGATC 334
BSNT_01256___ 335 CCGAAAATGAACAGCGCCAGAAACA---------CCTGCTGGCA-GCACA 374
|..||||||| |.|| ||||| |.||| ||| |||.|
BPUM_0691___y 335 CACAAAATGA-----GGCA-AAACAAGAGGCGCTCATGC--GCATGCAAA 376
BSNT_01256___ 375 AGCGAAAATGG---ACGCAAACAATGCATGGGATGCAAACACCTTGGCAA 421
|.|| ||||| |.|.|.|| |||||||||||.|||...|..||||
BPUM_0691___y 377 ATCG--AATGGATCAGGAAGAC---GCATGGGATGCGAACCTGTCAGCAA 421
BSNT_01256___ 422 AAACCGTATTGTCTAAGCTGGGCGTCAACGA-------CGTAACAAAACC 464
||||..|.|||.|.|||||.||||||||.|| ||| .|
BPUM_0691___y 422 AAACGATTTTGACAAAGCTTGGCGTCAAAGATGTGAGCCGT-------TC 464
BSNT_01256___ 465 GGTCAATGAGCTCTCAGGCGGCCAGAAAAAACGGGTGGCCATTGCCAAAA 514
|||..|||...|.||||||||.||||||||.||.||.||.|||||.||||
BPUM_0691___y 465 GGTTCATGCCTTATCAGGCGGACAGAAAAAGCGTGTCGCGATTGCTAAAA 514
BSNT_01256___ 515 ACTTAATTCAGCCTGC-TGATCTGCTCATTTTGGACGAGCCGACAAACCA 563
|.|||||||||||.|| .||| ||||.|||||.||.|||||.||.|||||
BPUM_0691___y 515 ATTTAATTCAGCCCGCAGGAT-TGCTGATTTTAGATGAGCCAACCAACCA 563
BSNT_01256___ 564 TTTGGATAATGAAACGATTGAGTGGCTTGAAGGGTATTTAAGCCAATATC 613
|.|.|||||||.|||||||||.|||||.|||||.|||||.||.|||||..
BPUM_0691___y 564 TCTCGATAATGCAACGATTGAATGGCTCGAAGGATATTTGAGTCAATACA 613
BSNT_01256___ 614 CCGGCGCCGTCATGCTGGTGACGCACGATAGATATTTCTTAAACCGTGTC 663
.|||.||.|||||..||||||||||.|||.|.||||||.|.||||||||.
BPUM_0691___y 614 GCGGTGCTGTCATTTTGGTGACGCATGATCGTTATTTCCTCAACCGTGTG 663
BSNT_01256___ 664 ACCAACCGCATTTATGAGCTTGA---AAGAGGCAGCCTCTACACGTACAA 710
.||||.||.|||||||| .|||| ||| |.||| |||||.|||||.||
BPUM_0691___y 664 GCCAATCGGATTTATGA-ATTGAATCAAG-GACAG-CTCTATACGTATAA 710
BSNT_01256___ 711 AGGCAACTATGAAGTGTTTTTAGAAAAACGTGCGGAACGGGAAGCGCAGG 760
|||.||.||||||||.||||||||||||.|.||||||||.|||||..|||
BPUM_0691___y 711 AGGAAATTATGAAGTCTTTTTAGAAAAAAGAGCGGAACGAGAAGCAGAGG 760
BSNT_01256___ 761 CTGAGCAAAAGGAGACGAAGCGGCAAAACCTGCTGCGCCGCGAGCTGGCC 810
|..||...||.||.|||||.||.||||||.|.||..|.||.|||||.||.
BPUM_0691___y 761 CCCAGGTGAAAGAAACGAAACGTCAAAACTTACTCAGACGAGAGCTTGCA 810
BSNT_01256___ 811 TGGCTCAGACGAGGAGCGAAAGCCCGCTCAACAAAACAAAAGGCGAGAAT 860
|||||.|||.||||.||.|||||..|..||||.||.||.||.||..|.||
BPUM_0691___y 811 TGGCTGAGAAGAGGGGCAAAAGCAAGAACAACGAAGCAGAAAGCACGCAT 860
BSNT_01256___ 861 TGACCGGGTAGAGACG-----CTTAAAGAGCAGAAAGGCCCTCA-GTCAT 904
.||.||||..| ||.|..||.||.|||||||||.| |..|
BPUM_0691___y 861 -----CGGCAGAGCTGAAGAACTAATGGATCAAAAAGGCCCTGATGCGA- 904
BSNT_01256___ 905 CAGGTTCA-CTCGATTTTGCCATTGGCTCGCACCGTCTCGGAAAACAGGT 953
|||...| ||.|||||.|||||.||.|||||.||.||.||||||||.||
BPUM_0691___y 905 -AGGGAGAGCTAGATTTCGCCATCGGTTCGCATCGCCTAGGAAAACAAGT 953
BSNT_01256___ 954 TATTGAAGCGGAGAAC--GTCATGATCGCTTATGACGGCCGCATGCTCGT 1001
.||.||.||.||..|| |||| ||..|.|.||..||||..|..||.||
BPUM_0691___y 954 CATAGAGGCAGAAGACTTGTCA--ATTTCATTTGCTGGCCAGACCCTTGT 1001
BSNT_01256___ 1002 CGACCGTTTTAATGAACTT-GTCATACCAGGTGAACGGATCGGGATCATC 1050
.||.|..||||..| |||| |||.|.||.||.||.|||||.||..||||.
BPUM_0691___y 1002 GGAGCAGTTTACAG-ACTTAGTCGTGCCGGGCGACCGGATTGGATTCATT 1050
BSNT_01256___ 1051 GGGCCGAACGGCATCGGGAAAACAACGCTGTTAAATGCCCTTGCCGG--- 1097
||||||||.||..||||.|||||.|||||..|.|||...||.||.||
BPUM_0691___y 1051 GGGCCGAATGGAGTCGGAAAAACGACGCTTCTCAATTGTCTAGCGGGTAA 1100
BSNT_01256___ 1098 -------CCGTCATACGCCGGACGGAGGCGATATT-ACGATCGGACAGAC 1139
|||.|.| |.||||.| || |||||.|||||.||
BPUM_0691___y 1101 AATTGAACCGACTT---CAGGACAG--------TTGACGATTGGACAAAC 1139
BSNT_01256___ 1140 GGTCAGAATCGGCTACTATACTCAGGATCATAGTGAAATGAACGGTGAGT 1189
.||..|.||.||.||.||.||.||||||||||..||||||.|.|..|||.
BPUM_0691___y 1140 CGTTCGCATTGGTTATTACACGCAGGATCATAAGGAAATGGATGAAGAGC 1189
BSNT_01256___ 1190 TAAAGGTCATTGACTATATAAAAGAAACGGCGGAGGTCGTAAAAACGGCA 1239
|.|.|.|||||||.||.||.||.|||||.||.|||.||||.||.||..|.
BPUM_0691___y 1190 TGACGATCATTGAATACATCAAGGAAACAGCTGAGATCGTTAAGACATCT 1239
BSNT_01256___ 1240 GATG--GCGATA-TGATTACAGCTGAACAAATGCTCGAGCGTTTCCTCTT 1286
|||| ||.||| || |||||.||.||||||||.||.||.|||||.||
BPUM_0691___y 1240 GATGATGCCATAGTG---ACAGCAGAGCAAATGCTGGAACGGTTCCTATT 1286
BSNT_01256___ 1287 CCCGCGTTCAATGCAGCAGACGTATATCCGCAAGCTGTCCGGCGGGGAAA 1336
|||..|.||.|||||||.|||||.|||.|||||||||||.||.||.|||.
BPUM_0691___y 1287 CCCAAGATCCATGCAGCGGACGTTTATTCGCAAGCTGTCAGGGGGAGAAC 1336
BSNT_01256___ 1337 AACGCCGTTTATACTTGCTTCAGGTTCTCATGCAGGAGCCGAATGTCCTG 1386
..|||.|.||.||.||.||..|.||..|.|||.|.||.||||||||.||.
BPUM_0691___y 1337 GCCGCAGATTGTATTTACTGAAAGTCTTAATGGAAGAACCGAATGTTCTC 1386
BSNT_01256___ 1387 TTTCTCGATGAGCCGACGAACGATTTGGATACTGAAACATTAAGCGTTCT 1436
|||.|.||||||||.|||||||||.|.|||||.||.||..|.|||.||.|
BPUM_0691___y 1387 TTTTTAGATGAGCCAACGAACGATCTTGATACGGAGACCCTCAGCATTTT 1436
BSNT_01256___ 1437 TGAGGATTATATTGACCAATTCCCTGGCGTCGTCATCACCGTATCCCATG 1486
.|||||||||.|.||.||.||.||||||||.|||||.||||||||.||||
BPUM_0691___y 1437 AGAGGATTATTTAGAACAGTTTCCTGGCGTTGTCATGACCGTATCGCATG 1486
BSNT_01256___ 1487 ACCGCTATTTCCTTGACCGCGTCGTCGACCGTTTGATTGTATTTGAAGGA 1536
|.||.||||||.|.|||||.||.||..|.|||.|..|.||.|||||||||
BPUM_0691___y 1487 ATCGTTATTTCTTAGACCGGGTGGTTCATCGTCTACTCGTCTTTGAAGGA 1536
BSNT_01256___ 1537 AATGGCGTCATTTCCCGCTTTCAAGGCTCCTATAGCGACTATATGGAGGA 1586
||||||..||||||.|.||..||||||.|.||.|||||.||.||||||
BPUM_0691___y 1537 AATGGCCGCATTTCACACTACCAAGGCGCTTACAGCGATTACATGGAG-- 1584
BSNT_01256___ 1587 GTCAAAAGCGAAAA-------AAGCGGCC-----CAAAAACCGACAGCTG 1624
||| ||||| ||||||.| |||| |.|.||||
BPUM_0691___y 1585 --CAA----GAAAAAGAGCAGAAGCGGACAGAGACAAA----GCCTGCTG 1624
BSNT_01256___ 1625 AGGAAAAAACGGCTGAAGCCGAGCCGAAGAAAAAACGGAAAAAGCTTTCT 1674
||.||.|| |..|||||.|.||| .||||||.|.|||||.||||||
BPUM_0691___y 1625 AGAAACAA---GTAGAAGCGGCGCC---TAAAAAAAGAAAAAAACTTTCT 1668
BSNT_01256___ 1675 TACAAAGACCAGCTGGAATGGGACGGCATCGAAGATAAAATTGCCCAG-- 1722
||||||||||||||.||||||||.||.||.|||||....||| |||
BPUM_0691___y 1669 TACAAAGACCAGCTTGAATGGGATGGAATTGAAGACCGGATT---CAGGC 1715
BSNT_01256___ 1723 -CTGGAAGAAAAGCATGAGCAGCTCGAAGCTGACATCGCCGCAGCAGGCA 1771
.||||.|||||.|||.|||||||.|||||...|||.||.|.||||||||
BPUM_0691___y 1716 ATTGGAGGAAAAACATCAGCAGCTTGAAGCAAGCATTGCAGAAGCAGGCA 1765
BSNT_01256___ 1772 GTGATTTTGGCAAAATCCAAGAGCTGATGGCCGAGCAGGCGAAAA----C 1817
||||||||||.|||||.|||||.|||||||.|||.|| |||| .
BPUM_0691___y 1766 GTGATTTTGGGAAAATTCAAGAACTGATGGACGAACA----AAAAGCCGT 1811
BSNT_01256___ 1818 TGCGGAAGAGCTTGAGGCTGCGATGGACCGCTGGACAGAATTGTCCCTCA 1867
|||.|||||.||.||....||.||||||||||||||||||.||||..|||
BPUM_0691___y 1812 TGCTGAAGAACTAGAACAAGCAATGGACCGCTGGACAGAACTGTCGATCA 1861
BSNT_01256___ 1868 TGATCGAAGAACTGGAAAGCTAA 1890
||||.||.|||.|.|||.|.|||
BPUM_0691___y 1862 TGATTGAGGAATTAGAAGGTTAA 1884
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