Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03140 and BPUM_0687

See Amino acid alignment / Visit BSNT_03140 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:37
# Commandline: needle
#    -asequence dna-align/BSNT_03140___yozN.1.24716.seq
#    -bsequence dna-align/BPUM_0687___yozN.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03140___yozN-BPUM_0687___yozN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03140___yozN-BPUM_0687___yozN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03140___yozN
# 2: BPUM_0687___yozN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 266
# Identity:     217/266 (81.6%)
# Similarity:   217/266 (81.6%)
# Gaps:          10/266 ( 3.8%)
# Score: 895.5
# 
#
#=======================================

BSNT_03140___      1 GTGGTTCAACCAACTCCGTATATCAATATTAATATTTTCATGCTGAAAAT     50
                     ||||||||||||||||||||||||||||||||||||||||||.|.|||||
BPUM_0687___y      1 GTGGTTCAACCAACTCCGTATATCAATATTAATATTTTCATGTTAAAAAT     50

BSNT_03140___     51 TAATTCCTTTGAAAATGCTTCAGCGGTTAACGTAGGACAAAATTTATTGG    100
                     ||||||||||||||||||.||.|||||.||.||.|||||||||||.||.|
BPUM_0687___y     51 TAATTCCTTTGAAAATGCGTCGGCGGTGAATGTCGGACAAAATTTGTTAG    100

BSNT_03140___    101 CAGAATGGCAAAATTCTGATAAAAAAAATCAAGGCTACGGACAGAATTTT    150
                     ||||.||||||||.||.||||||||||||||.||.||||||||.||||||
BPUM_0687___y    101 CAGAGTGGCAAAACTCAGATAAAAAAAATCAGGGGTACGGACAAAATTTT    150

BSNT_03140___    151 GGAGATGCGAGCGGATTTATGGGCACGAGAAGCCATGTGGATGACAGAGA    200
                     ||||||||.|||||.|||.|.||.||.|.|||||||||.|||||..||||
BPUM_0687___y    151 GGAGATGCCAGCGGTTTTGTCGGGACAAAAAGCCATGTAGATGATCGAGA    200

BSNT_03140___    201 CCAAATTGATTCTCCGGCCTCTTTTGAAAGTGA--AGCGGTTAACTCCTC    248
                     .|||.|.||.||.||.|||||||||     |.|  |.|.|.|||..||  
BPUM_0687___y    201 TCAAGTGGACTCACCTGCCTCTTTT-----TCACCAACAGCTAAACCC--    243

BSNT_03140___    249 AATCAAAAGGAAGTGA    264
                      ||..|||||||||||
BPUM_0687___y    244 -ATTCAAAGGAAGTGA    258


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