Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03139 and BPUM_0686

See Amino acid alignment / Visit BSNT_03139 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:37
# Commandline: needle
#    -asequence dna-align/BSNT_03139___yocM.1.24716.seq
#    -bsequence dna-align/BPUM_0686___yocM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03139___yocM-BPUM_0686___yocM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03139___yocM-BPUM_0686___yocM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03139___yocM
# 2: BPUM_0686___yocM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 487
# Identity:     356/487 (73.1%)
# Similarity:   356/487 (73.1%)
# Gaps:          17/487 ( 3.5%)
# Score: 1249.0
# 
#
#=======================================

BSNT_03139___      1 ATGGATTTCGAAAAGATGAAGCAGTGGATGGA-ATTCGCACAGCAGATGT     49
                     |||||.||||||||.||||||||||||||||| ||| ||.|||||.|||.
BPUM_0686___y      1 ATGGACTTCGAAAAAATGAAGCAGTGGATGGATATT-GCCCAGCAAATGC     49

BSNT_03139___     50 ACGGCGGTGACTTTTGGAAACAGGTATTTGATGAAGACCAAAAAACCCCT     99
                     |.||.|.|||.|||||||||..|.|.||.|||||.||.||||.|.|.||.
BPUM_0686___y     50 ATGGGGATGATTTTTGGAAAATGATCTTCGATGATGAGCAAAGATCTCCC     99

BSNT_03139___    100 TTTATGACAAATGGCCAATCTCCGTTTCCGTTTGCGCAGCAAGATCAGCG    149
                     ||||||.||||.||.|..|||||.|||.|.|||.|||||||.||||||||
BPUM_0686___y    100 TTTATGGCAAACGGTCCGTCTCCCTTTACATTTACGCAGCAGGATCAGCG    149

BSNT_03139___    150 AGGGAAAGGAGATGCTTCATTTCCGAGCATGGATATTGTAGATACCGTTA    199
                     .||..|   ||||||.||.|||||...|||.||.||.||.||.||||..|
BPUM_0686___y    150 CGGCCA---AGATGCGTCGTTTCCACCCATCGACATGGTGGAAACCGCGA    196

BSNT_03139___    200 CGGAAGTACAATTTTTAATTTATCTTCCAGGCTACCGTAAACAAGACGTT    249
                     |.|||.|.||.|...||||||||.|.||.||||||||.||..||||.||.
BPUM_0686___y    197 CAGAAATTCAGTACCTAATTTATTTGCCTGGCTACCGAAAGGAAGATGTA    246

BSNT_03139___    250 CACATATTATCGTACGGAGATTATTTAGTGGTGAAGGGGCAGCGCTTTTC    299
                     ||..|.|||||.||.||.||.|||||.||.||||||||.|||||.|||||
BPUM_0686___y    247 CAAGTGTTATCATATGGCGAATATTTGGTTGTGAAGGGACAGCGTTTTTC    296

BSNT_03139___    300 CTATTTTAATGAACAGGACTTTCGCCAAAAAGAAGGGAGATACGGAAGTT    349
                     ||.|||||||||.|||||||||||||||||..||||||..||.||....|
BPUM_0686___y    297 CTTTTTTAATGAGCAGGACTTTCGCCAAAAGCAAGGGAAGTATGGTCCGT    346

BSNT_03139___    350 TTGAAAAGAAAATTCCGCTTTCC---GATCATCTTCATGGAAAGATGAAT    396
                     |||||||||||| |||||.||||   |||.|  |||..||..|.||||||
BPUM_0686___y    347 TTGAAAAGAAAA-TCCGCCTTCCAGAGATGA--TTCTCGGTCAAATGAAT    393

BSNT_03139___    397 GCCATTTTTAAAGACGGAATCCTATACATCACTATTCAAAAAGACGAAGG    446
                     ||....|||||||||||..|.||.||||||....|.|||||.||.|||||
BPUM_0686___y    394 GCTGCCTTTAAAGACGGTGTACTTTACATCCGCCTGCAAAAGGATGAAGG    443

BSNT_03139___    447 TCAAGCGAAAACCATTGTTATTGATG------ATTGA    477
                     ..||||||...|.||..|.||.||||      |||||
BPUM_0686___y    444 AAAAGCGACGGCTATCATCATAGATGACGAATATTGA    480


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