Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03136 and BPUM_0685
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_03136___yocL.1.24716.seq
# -bsequence dna-align/BPUM_0685___yocL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03136___yocL-BPUM_0685___yocL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03136___yocL-BPUM_0685___yocL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03136___yocL
# 2: BPUM_0685___yocL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 395
# Identity: 208/395 (52.7%)
# Similarity: 208/395 (52.7%)
# Gaps: 103/395 (26.1%)
# Score: 517.5
#
#
#=======================================
BSNT_03136___ 1 ----------------------------------ATGAAAAAAATG-TTC 15
.|.||||||.|| .||
BPUM_0685___y 1 GTGGTCTACTTGAAACATTTCATTCTATCACTCTTTAAAAAAACTGAATC 50
BSNT_03136___ 16 CGGTCGCTGATCAGGCATTGC---TTGAAACCAGAACTTGACAAACTGCG 62
|.||| |||..| .||..||| ||.||.||.|
BPUM_0685___y 51 CAGTC----------CATCCCCCTCTGTCACC-GAGCTGGAGA------- 82
BSNT_03136___ 63 TGAATGTGAAGAAAGACTCTCAGTGATTGAGAAACAAAAACAAAG-CAGC 111
||||.|||.|.|...|.||| ||||| ||.| |.||
BPUM_0685___y 83 -----------AAAGGCTCACCGCTCTCGAG---CAAAA--AATGTCTGC 116
BSNT_03136___ 112 AAACAG--------GAGTCTGAAGAAACCTATATACATATTGAAACGCTG 153
|.||| |..||.||.||.||..|.||.|||||.|||.|.|||
BPUM_0685___y 117 -ATCAGCTTCCCCTGTCTCAGAGGATACACACATTCATATCGAATCCCTG 165
BSNT_03136___ 154 AATGTCGAAAAAATTGACTATCATCTTGAATTCGGCGAGCTGACCATTGA 203
.||||.||.||||||||.||.|||.|.||.||.||.|||||..|||||||
BPUM_0685___y 166 CATGTGGACAAAATTGATTACCATTTAGAGTTTGGTGAGCTTTCCATTGA 215
BSNT_03136___ 204 TGAACTGAGCGGCAGATTAAATATAGGCGCAACCTATTATATACCGCCAG 253
..|.||....||||||.|.||.||.||.|||||||||||.| |||||.
BPUM_0685___y 216 CCAGCTTCAAGGCAGACTCAACATTGGGGCAACCTATTACA---CGCCAA 262
BSNT_03136___ 254 AAGAGAAGGA---CAAAAAGT-------GCCAACGAAAACCCGAAGCACC 293
||||.|.|.| ||||||.| .|||.|| ||.||..|||.|.|
BPUM_0685___y 263 AAGACACGCACATCAAAAAATCAGCACCTCCACCG-AAGCCAAAAGAAAC 311
BSNT_03136___ 294 ATCGACGCCAGCGGTCACGATCCGTTCAAAAAGGCA-----GTAG 333
|...||.||..|.|||.||||.||.|| ||||.|| |||.
BPUM_0685___y 312 AAAAACACCGACAGTCTCGATTCGATC--AAAGCCACATTCGTAA 354
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