Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00725 and BPUM_0683
See
Amino acid alignment /
Visit
BSNT_00725 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:30
# Commandline: needle
# -asequence dna-align/BSNT_00725___pbpC.1.24716.seq
# -bsequence dna-align/BPUM_0683.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00725___pbpC-BPUM_0683.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00725___pbpC-BPUM_0683.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00725___pbpC
# 2: BPUM_0683
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2364
# Identity: 1262/2364 (53.4%)
# Similarity: 1262/2364 (53.4%)
# Gaps: 681/2364 (28.8%)
# Score: 2589.0
#
#
#=======================================
BSNT_00725___ 1 -----------------------ATGTT--------AAAAAAGT------ 13
||.|| ||||||||
BPUM_0683 1 TTGTATACGGATCAACGAAAATCATTTTGGAAACAGAAAAAAGTCATGAT 50
BSNT_00725___ 14 --GTATTCTACTAGTAT--TTCTA--TGC-GTCGGATTGATTGGGTTAAT 56
..||||| ||||.| |..|| ||| ||.|..||..||...||||
BPUM_0683 51 TCCCATTCT--TAGTGTCATCGTAGTTGCTGTTGCTTTCTTTTTCTTAA- 97
BSNT_00725___ 57 CGGATGCTC------CAAAA-------CAGATTCACCAGAGGATCGCATG 93
..|||.||| ||||| .||.||.|..||.||.||
BPUM_0683 98 AAGATTCTCTTTTCTCAAAAGAAAAAGAAGCTTTAAAAGCGGCTC----- 142
BSNT_00725___ 94 GAAGCATTCGTGAAAC-AGTGGA-------------ACGATCAGCAATTC 129
||.|.||....|||| |.|||| |||| |||.....
BPUM_0683 143 -AATCCTTTACAAAACAAATGGAGAAGAAAGACTTTACGA--AGCTGGCT 189
BSNT_00725___ 130 GATGA-----------CATGTATCAAAGCC--TGACTAAAGATGTCAAAA 166
||||| |.|.|.|.|||||| ||||| |.||||||
BPUM_0683 190 GATGAGGTAACGAGTGCGTCTTTGAAAGCCAATGACT-----TCTCAAAA 234
BSNT_00725___ 167 AAGAAATCT--CCAAAAAA------GATTTCGTCAACAGGTATAAAGCCA 208
|| |.|.|| ||.||||| .||.||.||||| ||.|| .|.|.
BPUM_0683 235 AA-ACAACTAGCCGAAAAATACGACAATATCTTCAAC-GGAAT--TGGCG 280
BSNT_00725___ 209 TCTATGAGCAGGCCGGCGTAAAAAATTTGAAAG-TCACTGCGGGAGAAGT 257
..|||||.|.| ||.||.|.|||| ||| |.||
BPUM_0683 281 CTTATGATCTG----------AACATATCAAAGCTCA---------ACGT 311
BSNT_00725___ 258 AGATAAGGACGATCAAGACAACAAGACGATGAAA-------CA--TATCC 298
.||.| |.||.||||| |.|||| || |.|||
BPUM_0683 312 TGAAA------AACAGGACAA-------AGGAAATGGGTATCAATTTTCC 348
BSNT_00725___ 299 CGTATAAAGTCAGCATGAACACAAATGCC----GGCAAAGTCAGCTTCAA 344
|||.|.||.|..|||| |||.|.| |||| ||||.||.
BPUM_0683 349 --TATGATGTGACAATGA----AAACGTCATTTGGCA-----AGCTGCAC 387
BSNT_00725___ 345 GAATACTGCTGTGCTGAAATTAG-----------AAAAAACAGATGACGA 383
.| ||| |.||.|.| || ||||.| |||||||.|
BPUM_0683 388 AA-----GCT-TTCTTACA--AGGGCGTTCTCTCAAAAGA-AGATGACAA 428
BSNT_00725___ 384 GGAGTCATGGAATATAGATTGGGACCC--ATCGTTTATTTTCAAGCAGCT 431
||||||..|.||.|||.|.|| ||| |.||.|||..|||..|
BPUM_0683 429 ------ATGGAAAGTCGACTGGAAGCCAAATC--TCATCTTCCCGCAAAT 470
BSNT_00725___ 432 GGCTG---------ACGA-CAAAACCGTGCAAATTATGAGCAT--TGAA- 468
|| .| |||| |||| || |||||.| ||.|.| ||.|
BPUM_0683 471 GG-AGAAGGGAGATACGATCAAA---GT-CAAATCA-GACCCTGCTGTAC 514
BSNT_00725___ 469 -CCGAAACGAGGCCAAATTTACGATAAAAATGGAAAAGG------CTTAG 511
|.||||| ||...|| |..||||||| |.|||
BPUM_0683 515 GCGGAAAC--------ATCGTCG------ACCGAAAAGGACGTACCCTAG 550
BSNT_00725___ 512 CCGTCAATACAGATGTTCCGGA-----AATTGGAATTGTTCCCGGAGAGC 556
|.| |.|||..|| .|||| |.||||.||..|.||.|||.|||
BPUM_0683 551 CAG---AAACAACTG--GCGGAAGCGCACTTGGCATCATCCCAGGAAAGC 595
BSNT_00725___ 557 TTGGC----GATAAAAAAGAGAAAGTCATA--AAAGAACTCGCCAAAAAA 600
||||| ||.||.|||.||||.|..||| |||.||.||..|||...|
BPUM_0683 596 TTGGCACAGGAGAAGAAAAAGAACGCAATATCAAAAAAATCAGCAAGGCA 645
BSNT_00725___ 601 CTTGAT-TTGACTGAAGACGACATCAAGAAAAAGCTGGATCAAGGCTGGG 649
.||||| |||| ||||||...||||.|.||..|||||.|.||||..||||
BPUM_0683 646 TTTGATATTGA-TGAAGAACTCATCGACAATCAGCTGAAACAAGCATGGG 694
BSNT_00725___ 650 TAAAAGACGATTCGTTTGTGCCGCTCAAA--AAGGTCAAGCCTGACCAGG 697
|.|.||||||..|||||||.||.|||||| ||.||.| ||.|||
BPUM_0683 695 TCACAGACGACACGTTTGTTCCACTCAAATCAATGTTA-----GAACAG- 738
BSNT_00725___ 698 AGAAATTAGTTTCTGAAGCGACGTCAT-TACAAGGCG-----TAACAA-- 739
||...|.|||..||| .|| ||.|||||| ||.|||
BPUM_0683 739 ---AAGCCGATTCCAAAG------GATATAAAAGGCGTCACCTATCAATC 779
BSNT_00725___ 740 GAACG-AATGTCAGCTCCCGCTACTATCCGTATGGCGAAAAG--ACAGCC 786
|||.| |||| ||.|||||.||.|||..| |||| .|.|||
BPUM_0683 780 GAAGGAAATG--------CGTTACTACCCTTATAAC--AAAGCCGCCGCC 819
BSNT_00725___ 787 CATTTGACAGGCTATGTCCGCGCCATTACAGCGGAA---GAACTGAAGA- 832
|||.|.||.|||||||| .|||| .||.||.|||
BPUM_0683 820 CATCTCACCGGCTATGT--------------TGGAAAAGCAAATGCAGAT 855
BSNT_00725___ 833 ------AAAAGAAAGAAGGAACGT--ACAGC-GATACGTCTAA-CATCGG 872
||||||||...|| ||| |.||| || ||.|| ||||||
BPUM_0683 856 GATATCAAAAGAAATCCGG--CGTTAAAAGCAGA----TCAAATCATCGG 899
BSNT_00725___ 873 TATCGCCGGACTTGA----AAATGTGTATGAAGACAAGCTAAGAGGCACA 918
.|...||||.||.|| |.||.|| |..||.||..|| |.|| |||
BPUM_0683 900 CAAAACCGGCCTAGAATTCACATTTG-ACAAAAACTTGC---GTGG-ACA 944
BSNT_00725___ 919 A-CTGGCTGGAA-------AATC-TACGTGCCGCAAACCGG---GGAAG- 955
| .|||| |||| |||| |.|.||..| ||||.|| .||||
BPUM_0683 945 AGATGGC-GGAAGCATTTTAATCGTCCATGATG-AAACAGGCATTGAAGA 992
BSNT_00725___ 956 -TCATCGC-----------TGAAAAGAAAGCAAAGGACGGCGAGGATCTT 993
.|||.|| .||.||||..|.||| ||.|.||
BPUM_0683 993 AACATTGCAAAAATCAGATCGACAAGATGGAAAA--ACAGTGA------- 1033
BSNT_00725___ 994 CACCTCACAATTGAT--ATCAAAAC-GCAAACGAAGCTGTATGATGAACT 1040
|.||.||.|||||| .||...|| |.||| |||| .|||||..|.||
BPUM_0683 1034 -AGCTGACCATTGATGCTTCTTTACAGAAAA--AAGC-CTATGAACAGCT 1079
BSNT_00725___ 1041 GAAGGATGACAGCGGGGCGGCAGTCGCGCTGCAGC-CGAAGACA------ 1083
|||.|.|||.|..|| |||.|||.| ||.| .|||..||
BPUM_0683 1080 GAAAGGTGAAAAAGG---GGCCGTCAC----CATCATGAATCCATCTTCT 1122
BSNT_00725___ 1084 GGCGAAACACTCGCCCTTGTCAGCGCGCCTTCCTACGAT----------- 1122
||.||...|.|.||.||||||||.||.||||||||.|||
BPUM_0683 1123 GGGGATCTATTAGCGCTTGTCAGTGCCCCTTCCTATGATGTCAATCTCAT 1172
BSNT_00725___ 1123 -CCAAACGGATTTATTTTCGGCT--GGAGCGATAAGGAATGGAAAAAGCT 1169
.||||||||.|.| |..|| |||| .||.|||.|| |.|| |
BPUM_0683 1173 GACAAACGGAATCA----CACCTAAGGAG-TATCAGGCAT----ACAG-T 1212
BSNT_00725___ 1170 --AAACAAAGATAAAAACAATCCGTTTTCA---GCGAAATTCAATAAGAC 1214
||||..|||| .|||..||.|| .||..||.| |||.|
BPUM_0683 1213 GAAAACCCAGAT-------CTCCCATTCCAAGCCCGTTATGC---AAGCC 1252
BSNT_00725___ 1215 -ATACGCGCCAGGTTCTACCATT--AAACCGATTGCGGCTGCTAT----- 1256
|||.||.|||||.|||| |||| ||||| |||.|.||.||.||
BPUM_0683 1253 GATATGCACCAGGGTCTA-CATTCAAAACC-ATTACAGCAGCCATCGGGC 1300
BSNT_00725___ 1257 TGGAATCAAAAACGG---CACCCTTAAAGCC-GATGAGAAGAAA------ 1296
|||||.|| || ||| |||||| .|| |||
BPUM_0683 1301 TGGAAACA-----GGTGTCAC----AAAGCCTCAT------AAAGTACGC 1335
BSNT_00725___ 1297 ACAATCAAAGGCAAGGAGTGGCAAAAAGATTCGAGCTGGGGCGGCTATT- 1345
||.|||.|.||...|.|.||||||||||| ||.|.||.|| |||.|||
BPUM_0683 1336 ACCATCCATGGACTGAAATGGCAAAAAGA-TCAATCTTGG--GGCAATTA 1382
BSNT_00725___ 1346 ---CAGTGACACGTGTGTCTGAGAGACTTCAACAAGTCGATTTGGAAAAC 1392
||.| |||.|.| |||| ||||...||||||
BPUM_0683 1383 TCGCATT---ACGCGGG----------TTCA------CGATAAAGAAAAC 1413
BSNT_00725___ 1393 ---------------GCCCT--TATTACGTCAGACAATATTTATTTTGCC 1425
||||| || ||| |||||.||||||||.||.|..
BPUM_0683 1414 GTAAATATGGTTGATGCCCTCGTA-TAC-TCAGATAATATTTACTTCGGT 1461
BSNT_00725___ 1426 CAGAATGCGCTTGATATGGGAGCGGACACCT-TCACAAAAGGCTTGAAGA 1474
|||.|.||.||.||.||.||....||||||| |.|.||||...|..|||
BPUM_0683 1462 CAGGAAGCTCTGGAAATTGGCAAAGACACCTATGAGAAAAAAGTAAAAG- 1510
BSNT_00725___ 1475 CATTCGGTTTTTCAGA------GGACGTTCCGTACGAATTCCCGAT---- 1514
|||||||.|||...|| |.||.|.|| |||..|.||
BPUM_0683 1511 CATTCGGATTTGGCGAAGATTTGCACATGCC------ATTTACAATGAAA 1554
BSNT_00725___ 1515 CCAGAA-----ATCGTCTATTGCAAATGACAAGC-TTGATTCAGACATTT 1558
||||.| |||| ||.||| .|| ||.|.||.|||||..
BPUM_0683 1555 CCAGCACAAGTATCG---------AACGAC-GGCATTCAATCGGACATCC 1594
BSNT_00725___ 1559 TGCTTGCGGATACAGGC-TACGGACAAGGGCAAATGCAAATGTCTCCGCT 1607
|||||||.||..| ||| ||.||.|||||..||.|.|..|||||.|||.|
BPUM_0683 1595 TGCTTGCTGACTC-GGCATATGGTCAAGGTGAATTACTCATGTCACCGAT 1643
BSNT_00725___ 1608 TCACTTGGCAA----CTGCTTACACGCCATTTGTTGACAA----TGGAGA 1649
|.| .||| .|||.||..|.||||||| ||| .||..|
BPUM_0683 1644 TGA----ACAAGTACATGCCTATTCTCCATTTG----CAACAGGGGGCAA 1685
BSNT_00725___ 1650 CCTTGTCAAAC--CGACGCTGATCAA-AAAAGATTCACAAACAGCTGATG 1696
.||||||.|.| ||| |..|.|||| |..||| ||||||| ||
BPUM_0683 1686 GCTTGTCTATCCTCGA-GTCGTTCAAGATGAGA-----AAACAGC--AT- 1726
BSNT_00725___ 1697 TTTGGCAC--AAGCAAGTGGTCACGAAGGAAGGGGCGGCAGACATTACAA 1744
||| ||.|||.|.||| ||.||||...||||| |.||||
BPUM_0683 1727 -----CACCAAAACAAATCGTC---AAAGAAGACTCGGCA---AATACA- 1764
BSNT_00725___ 1745 AAGGTCTGAAAG--GCGTT-------GTGGAAGATGAGCG--------CG 1777
.|||||| |||.| ||.| ||| || ||
BPUM_0683 1765 -----GTGAAAGACGCGCTCACTCAGGTCG----TGA-CGAGTCCAAACG 1804
BSNT_00725___ 1778 GATCAGCGTATCA-GCCTGTCGTAAAAGGAA-----TCACAGTGGCCGGG 1821
|..|||| ||| .|||..| |||.|||| |.|.| |.||||..
BPUM_0683 1805 GTACAGC---TCACTCCTTAC--AAATGGAAGGCGCTGATA-TCGCCGCT 1848
BSNT_00725___ 1822 AAAACAGGAACAGCCGAGCTGAAAACATCAA--AAGATGATAAAGACGGC 1869
|||||||||||.||.||.||| ||.|.||| |||..|..|.||||||.
BPUM_0683 1849 AAAACAGGAACGGCAGAACTG--AAGAGCAAGCAAGGAGCAACAGACGGT 1896
BSNT_00725___ 1870 ACGGAAAATGGCTGGTTTGTCGGCTACGATTAC----------AAAAACA 1909
.|.||||||||.| ||| ||| ||.| |||||..
BPUM_0683 1897 TCTGAAAATGGAT--TTT------TAC--TTGCATTTAATCCTAAAAAAG 1936
BSNT_00725___ 1910 AAG---ACCTGCTTGTCGCCATG-ATGATCCAAAATGTGCAGGACCGCGG 1955
||| ||.|.||.|||| | |||||..||.||||..|..|||||||
BPUM_0683 1937 AAGATTACGTCCTCGTCG----GTATGATTGAAGATGTAAAAAACCGCGG 1982
BSNT_00725___ 1956 CGGCAG-CCACTATGTCGTTGAGAAAGCGAAAAAGCAATTTCAATCGAAT 2004
|||.|| ..||| .|||.||.|.||| |..|||| .|.|| ||||.||
BPUM_0683 1983 CGGTAGTGGACT-CGTCATTCAAAAA---ATGAAGC-CTGTC-ATCGCAT 2026
BSNT_00725___ 2005 -------TAA---- 2007
|||
BPUM_0683 2027 CTTTTTATAAGTAA 2040
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.