Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01248 and BPUM_0681
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_01248___yfnC.1.24716.seq
# -bsequence dna-align/BPUM_0681.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01248___yfnC-BPUM_0681.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01248___yfnC-BPUM_0681.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01248___yfnC
# 2: BPUM_0681
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity: 860/1310 (65.6%)
# Similarity: 860/1310 (65.6%)
# Gaps: 151/1310 (11.5%)
# Score: 2612.5
#
#
#=======================================
BSNT_01248___ 1 TTGGCTATCGCCGCCCCGTTAAAAGAAAAAACAGTTCAAAA-------AC 43
||||||||.||.| |.|||...|||.|.|||| .|||||| |
BPUM_0681 1 TTGGCTATTGCTG-CTCGTACTAAGGATAAAC--CTCAAAATTCCGTCA- 46
BSNT_01248___ 44 CAGGCACCACGGTGTATCCGATTTTGATT-ATTATCGGAATTTGCCATAT 92
|.|||.|.|||||.|||||.||||| ||| |||||.||.|||||.|||||
BPUM_0681 47 CTGGCTCAACGGTCTATCCCATTTT-ATTGATTATTGGCATTTGTCATAT 95
BSNT_01248___ 93 GCTCAACGATTCGCTT--CAGGCTGTGATTCCGGCCATGTTCCCTATTTT 140
||||||.|| |.||| ||.||.||.|||||.||.||||||||||||||
BPUM_0681 96 GCTCAATGA--CACTTTGCAAGCCGTTATTCCTGCGATGTTCCCTATTTT 143
BSNT_01248___ 141 GGAACGCTCCATGAGCCTGACGTTTACACAGCTCGGCATCATCGCTTTCA 190
.||||||||.|||.|.|||||.||||||||..|.||..|.||.||.||.|
BPUM_0681 144 AGAACGCTCAATGGGGCTGACCTTTACACAATTAGGGCTGATTGCCTTTA 193
BSNT_01248___ 191 CATTAAACATGGTGTCATCCGTCATGCAGCCTGTTGTCGGCTGGTATACC 240
|||||||||||||.||.||.||.||||||||.|.|.|.||.|||||.||.
BPUM_0681 194 CATTAAACATGGTCTCCTCTGTGATGCAGCCCGCTATTGGGTGGTACACA 243
BSNT_01248___ 241 GATAAACGGCCGCGGCCGTATGCGCTGCCAGTCGGTTTGACCGCCAGCAT 290
||||||.|||||..|||.|||||.||.||..|.|.|||.....|.|| |
BPUM_0681 244 GATAAAAGGCCGATGCCTTATGCACTCCCGATTGCTTTATTTTCTAG--T 291
BSNT_01248___ 291 GC--TTGGCATTTTAGGCCTTGCATTTGCCCCGTCATT------CATAAC 332
|| |.||.||.||.||.|||||.|||||.||.||.|| ||||
BPUM_0681 292 GCTGTCGGTATATTCGGGCTTGCGTTTGCGCCTTCCTTTGCCACCATA-- 339
BSNT_01248___ 333 GATCCTATGCTGTGTGTTTTTCATTGGATTAGGCTCGGCCATTTTCCACC 382
.|.||.|||..|||.||| ||.|||.|.|||||.||.||||||||.|
BPUM_0681 340 -TTGCTTTGCGTTGTCTTT---ATCGGACTCGGCTCTGCTATTTTCCATC 385
BSNT_01248___ 383 CGGAGGGCTCCCGTGTGGCGTATATGGCCGCCGGCACAAAACGCGGGCTC 432
|.||||||||.|||||.||..|.|||||.||.||..|||.|||.||.||.
BPUM_0681 386 CAGAGGGCTCTCGTGTTGCCAACATGGCTGCTGGTCCAAGACGAGGACTT 435
BSNT_01248___ 433 GCCCAGTCGATTTATCAGGTGGGCGGAAACTCAGGCCAGGCGATGGCGCC 482
||.|||||.||.|||||.||.||||||||..||||.||.||..|.||.||
BPUM_0681 436 GCACAGTCCATCTATCAAGTAGGCGGAAATACAGGTCAAGCCTTTGCCCC 485
BSNT_01248___ 483 GCTGATCACCGCGCTGATCCTTGTACCGCTCGGGCAATTCGGC--GCTGT 530
|||.|||.|.||..|.||.||.||.||.||||| ||.|| |.|||
BPUM_0681 486 GCTAATCGCAGCATTAATGCTCGTCCCTCTCGG-----TCAGCCAGGTGT 530
BSNT_01248___ 531 ---TTGGTTCACGCTTGTCGCCGCGCTTGCTGT---TTTGTTTCTCATGT 574
||||||.|||.||||.|....|.||||||| |||..||| |.|
BPUM_0681 531 GGCTTGGTTTACGATTGTTGGAATGATTGCTGTCGGTTTCCTTC---TTT 577
BSNT_01248___ 575 ATATTGCGAAATGGTACGCCTCACGTCTCGGCAGCCTTGC---CCA---G 618
|||||.|.|.||||||||| .||.||.||| | ||| |
BPUM_0681 578 ATATTTCAAGATGGTACGC---------AGGAAGACTT-CAAACCATTCG 617
BSNT_01248___ 619 AAATCAGGCAAACAAAAG--------AAAACGG------CTGAAAACACG 654
|..|||.||.|| ||||| |||.||| |||||
BPUM_0681 618 AGCTCAAGCGAA-AAAAGCTCCAGCAAAAGCGGCAAGATCTGAA------ 660
BSNT_01248___ 655 GCCATCACC--AAATCTGTTGTATCTGCTCTTATTATTATTATATTTCTC 702
|.||||| ||.||.|...|..|.||.|||...|||||..|.||||||
BPUM_0681 661 --CTTCACCGTAAGTCAGCACTCACAGCACTTGGCATTATCGTCTTTCTC 708
BSNT_01248___ 703 ATTTTTGCTCGTTCTTGGTATACGAGTGCG--ATCGGTAACTTTTACACG 750
||.|||||.||.|||||||||...|.|||| |||| ||.||.||..||
BPUM_0681 709 ATCTTTGCCCGCTCTTGGTATGGAAATGCGATATCG--AATTTCTATGCG 756
BSNT_01248___ 751 TTTTACGCG----------ATGGATACCTATCACGTAAGCATTCAGCAGG 790
|||||.||| |||||| |.||| |||.|..|..
BPUM_0681 757 TTTTATGCGATTGAACAATATGGAT-----TGACG-----ATTAAAGAAT 796
BSNT_01248___ 791 CACAAAGCTATATTTTTGTCTTCTTGCT-GTTC--GGTGCAATCGGCACG 837
||||.|..||||||| ||||.||.|| .||| ||||||||.||.|||
BPUM_0681 797 CACAGACTTATATTT---TCTTATTTCTCATTCTAGGTGCAATTGGAACG 843
BSNT_01248___ 838 TTTCTCGGCGGCCCGCTTGCAGACCGTTTTG----GAAAACGCTTCGTTA 883
|||.|.|||||.||||||||||||||.||.| |||||| |||.|
BPUM_0681 844 TTTTTAGGCGGGCCGCTTGCAGACCGCTTCGGCAAGAAAAC----CGTCA 889
BSNT_01248___ 884 TCCTCGGTTCGCTGTT---ATGCTCGGCGCCGCTGGCGATTG-TGCTGCC 929
|..|...|||..|.|| ||.|| ..|||||.|| .||| |.|||||
BPUM_0681 890 TTTTAATTTCCTTATTGGCATCCT---TTCCGCTTGC-CTTGCTTCTGCC 935
BSNT_01248___ 930 ATTTGCCGGCCCGGTTCTCGCCTATGGCGTGCTCGCATTGATTGGCTTGG 979
|||||||||.||||||.|.||.||||...|.||.|...|||||||..|..
BPUM_0681 936 ATTTGCCGGACCGGTTTTTGCTTATGTTTTACTTGGGCTGATTGGAGTCA 985
BSNT_01248___ 980 TTCTGATGTCGAGCTTTTCTGTAACGGTCGTCTACGCACAGGAGCTAGTT 1029
||.|||..||.|||||.|||||.||.||.||.||.||.||.||.|||.||
BPUM_0681 986 TTTTGACATCAAGCTTCTCTGTCACAGTTGTTTATGCTCAAGAACTATTT 1035
BSNT_01248___ 1030 CCTGGAAAAATCGGCACAATGTCCGGTTTAACCGTCGGGCTTGCCTTCGG 1079
||.||.|||||.|||||||||||.||||||||.||.||||||||.||.||
BPUM_0681 1036 CCCGGGAAAATTGGCACAATGTCTGGTTTAACGGTTGGGCTTGCGTTTGG 1085
BSNT_01248___ 1080 GATGGGCGCGATCGGCGCTGTGGCGCTGGGCGCTCTGATTGACGCAGCGG 1129
.|||||.||.|||||..|.||.||..|.|||.|..|.|||||..|....|
BPUM_0681 1086 TATGGGTGCAATCGGATCGGTCGCTTTAGGCTCATTTATTGATACTTTCG 1135
BSNT_01248___ 1130 GACTGACCCCGACGATGATCGCCATTGCCTTTCTCCCTGTTCTCGGCATC 1179
|..|.||.||.||.|||||||...|.||.|||.|.||..|..|.|||||.
BPUM_0681 1136 GTTTAACGCCTACCATGATCGGGGTCGCTTTTTTACCGATATTAGGCATT 1185
BSNT_01248___ 1180 CTTGCCTTCCTATTGCCAAGTGACCAGA--AGCT-------GAGAGAATG 1220
||.||.|||.||.|.||.||.||.||.| |.|| ||..||||
BPUM_0681 1186 CTGGCATTCTTACTACCTAGCGATCAAACCATCTCCAAATGGAATGAAT- 1234
BSNT_01248___ 1221 GCATAGCTGA 1230
||||.
BPUM_0681 1235 -CATAA---- 1239
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