Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01248 and BPUM_0681

See Amino acid alignment / Visit BSNT_01248 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:50
# Commandline: needle
#    -asequence dna-align/BSNT_01248___yfnC.1.24716.seq
#    -bsequence dna-align/BPUM_0681.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01248___yfnC-BPUM_0681.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01248___yfnC-BPUM_0681.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01248___yfnC
# 2: BPUM_0681
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity:     860/1310 (65.6%)
# Similarity:   860/1310 (65.6%)
# Gaps:         151/1310 (11.5%)
# Score: 2612.5
# 
#
#=======================================

BSNT_01248___      1 TTGGCTATCGCCGCCCCGTTAAAAGAAAAAACAGTTCAAAA-------AC     43
                     ||||||||.||.| |.|||...|||.|.||||  .||||||       | 
BPUM_0681          1 TTGGCTATTGCTG-CTCGTACTAAGGATAAAC--CTCAAAATTCCGTCA-     46

BSNT_01248___     44 CAGGCACCACGGTGTATCCGATTTTGATT-ATTATCGGAATTTGCCATAT     92
                     |.|||.|.|||||.|||||.||||| ||| |||||.||.|||||.|||||
BPUM_0681         47 CTGGCTCAACGGTCTATCCCATTTT-ATTGATTATTGGCATTTGTCATAT     95

BSNT_01248___     93 GCTCAACGATTCGCTT--CAGGCTGTGATTCCGGCCATGTTCCCTATTTT    140
                     ||||||.||  |.|||  ||.||.||.|||||.||.||||||||||||||
BPUM_0681         96 GCTCAATGA--CACTTTGCAAGCCGTTATTCCTGCGATGTTCCCTATTTT    143

BSNT_01248___    141 GGAACGCTCCATGAGCCTGACGTTTACACAGCTCGGCATCATCGCTTTCA    190
                     .||||||||.|||.|.|||||.||||||||..|.||..|.||.||.||.|
BPUM_0681        144 AGAACGCTCAATGGGGCTGACCTTTACACAATTAGGGCTGATTGCCTTTA    193

BSNT_01248___    191 CATTAAACATGGTGTCATCCGTCATGCAGCCTGTTGTCGGCTGGTATACC    240
                     |||||||||||||.||.||.||.||||||||.|.|.|.||.|||||.||.
BPUM_0681        194 CATTAAACATGGTCTCCTCTGTGATGCAGCCCGCTATTGGGTGGTACACA    243

BSNT_01248___    241 GATAAACGGCCGCGGCCGTATGCGCTGCCAGTCGGTTTGACCGCCAGCAT    290
                     ||||||.|||||..|||.|||||.||.||..|.|.|||.....|.||  |
BPUM_0681        244 GATAAAAGGCCGATGCCTTATGCACTCCCGATTGCTTTATTTTCTAG--T    291

BSNT_01248___    291 GC--TTGGCATTTTAGGCCTTGCATTTGCCCCGTCATT------CATAAC    332
                     ||  |.||.||.||.||.|||||.|||||.||.||.||      ||||  
BPUM_0681        292 GCTGTCGGTATATTCGGGCTTGCGTTTGCGCCTTCCTTTGCCACCATA--    339

BSNT_01248___    333 GATCCTATGCTGTGTGTTTTTCATTGGATTAGGCTCGGCCATTTTCCACC    382
                      .|.||.|||..|||.|||   ||.|||.|.|||||.||.||||||||.|
BPUM_0681        340 -TTGCTTTGCGTTGTCTTT---ATCGGACTCGGCTCTGCTATTTTCCATC    385

BSNT_01248___    383 CGGAGGGCTCCCGTGTGGCGTATATGGCCGCCGGCACAAAACGCGGGCTC    432
                     |.||||||||.|||||.||..|.|||||.||.||..|||.|||.||.||.
BPUM_0681        386 CAGAGGGCTCTCGTGTTGCCAACATGGCTGCTGGTCCAAGACGAGGACTT    435

BSNT_01248___    433 GCCCAGTCGATTTATCAGGTGGGCGGAAACTCAGGCCAGGCGATGGCGCC    482
                     ||.|||||.||.|||||.||.||||||||..||||.||.||..|.||.||
BPUM_0681        436 GCACAGTCCATCTATCAAGTAGGCGGAAATACAGGTCAAGCCTTTGCCCC    485

BSNT_01248___    483 GCTGATCACCGCGCTGATCCTTGTACCGCTCGGGCAATTCGGC--GCTGT    530
                     |||.|||.|.||..|.||.||.||.||.|||||     ||.||  |.|||
BPUM_0681        486 GCTAATCGCAGCATTAATGCTCGTCCCTCTCGG-----TCAGCCAGGTGT    530

BSNT_01248___    531 ---TTGGTTCACGCTTGTCGCCGCGCTTGCTGT---TTTGTTTCTCATGT    574
                        ||||||.|||.||||.|....|.|||||||   |||..|||   |.|
BPUM_0681        531 GGCTTGGTTTACGATTGTTGGAATGATTGCTGTCGGTTTCCTTC---TTT    577

BSNT_01248___    575 ATATTGCGAAATGGTACGCCTCACGTCTCGGCAGCCTTGC---CCA---G    618
                     |||||.|.|.|||||||||         .||.||.||| |   |||   |
BPUM_0681        578 ATATTTCAAGATGGTACGC---------AGGAAGACTT-CAAACCATTCG    617

BSNT_01248___    619 AAATCAGGCAAACAAAAG--------AAAACGG------CTGAAAACACG    654
                     |..|||.||.|| |||||        |||.|||      |||||      
BPUM_0681        618 AGCTCAAGCGAA-AAAAGCTCCAGCAAAAGCGGCAAGATCTGAA------    660

BSNT_01248___    655 GCCATCACC--AAATCTGTTGTATCTGCTCTTATTATTATTATATTTCTC    702
                       |.|||||  ||.||.|...|..|.||.|||...|||||..|.||||||
BPUM_0681        661 --CTTCACCGTAAGTCAGCACTCACAGCACTTGGCATTATCGTCTTTCTC    708

BSNT_01248___    703 ATTTTTGCTCGTTCTTGGTATACGAGTGCG--ATCGGTAACTTTTACACG    750
                     ||.|||||.||.|||||||||...|.||||  ||||  ||.||.||..||
BPUM_0681        709 ATCTTTGCCCGCTCTTGGTATGGAAATGCGATATCG--AATTTCTATGCG    756

BSNT_01248___    751 TTTTACGCG----------ATGGATACCTATCACGTAAGCATTCAGCAGG    790
                     |||||.|||          ||||||     |.|||     |||.|..|..
BPUM_0681        757 TTTTATGCGATTGAACAATATGGAT-----TGACG-----ATTAAAGAAT    796

BSNT_01248___    791 CACAAAGCTATATTTTTGTCTTCTTGCT-GTTC--GGTGCAATCGGCACG    837
                     ||||.|..|||||||   ||||.||.|| .|||  ||||||||.||.|||
BPUM_0681        797 CACAGACTTATATTT---TCTTATTTCTCATTCTAGGTGCAATTGGAACG    843

BSNT_01248___    838 TTTCTCGGCGGCCCGCTTGCAGACCGTTTTG----GAAAACGCTTCGTTA    883
                     |||.|.|||||.||||||||||||||.||.|    ||||||    |||.|
BPUM_0681        844 TTTTTAGGCGGGCCGCTTGCAGACCGCTTCGGCAAGAAAAC----CGTCA    889

BSNT_01248___    884 TCCTCGGTTCGCTGTT---ATGCTCGGCGCCGCTGGCGATTG-TGCTGCC    929
                     |..|...|||..|.||   ||.||   ..|||||.|| .||| |.|||||
BPUM_0681        890 TTTTAATTTCCTTATTGGCATCCT---TTCCGCTTGC-CTTGCTTCTGCC    935

BSNT_01248___    930 ATTTGCCGGCCCGGTTCTCGCCTATGGCGTGCTCGCATTGATTGGCTTGG    979
                     |||||||||.||||||.|.||.||||...|.||.|...|||||||..|..
BPUM_0681        936 ATTTGCCGGACCGGTTTTTGCTTATGTTTTACTTGGGCTGATTGGAGTCA    985

BSNT_01248___    980 TTCTGATGTCGAGCTTTTCTGTAACGGTCGTCTACGCACAGGAGCTAGTT   1029
                     ||.|||..||.|||||.|||||.||.||.||.||.||.||.||.|||.||
BPUM_0681        986 TTTTGACATCAAGCTTCTCTGTCACAGTTGTTTATGCTCAAGAACTATTT   1035

BSNT_01248___   1030 CCTGGAAAAATCGGCACAATGTCCGGTTTAACCGTCGGGCTTGCCTTCGG   1079
                     ||.||.|||||.|||||||||||.||||||||.||.||||||||.||.||
BPUM_0681       1036 CCCGGGAAAATTGGCACAATGTCTGGTTTAACGGTTGGGCTTGCGTTTGG   1085

BSNT_01248___   1080 GATGGGCGCGATCGGCGCTGTGGCGCTGGGCGCTCTGATTGACGCAGCGG   1129
                     .|||||.||.|||||..|.||.||..|.|||.|..|.|||||..|....|
BPUM_0681       1086 TATGGGTGCAATCGGATCGGTCGCTTTAGGCTCATTTATTGATACTTTCG   1135

BSNT_01248___   1130 GACTGACCCCGACGATGATCGCCATTGCCTTTCTCCCTGTTCTCGGCATC   1179
                     |..|.||.||.||.|||||||...|.||.|||.|.||..|..|.|||||.
BPUM_0681       1136 GTTTAACGCCTACCATGATCGGGGTCGCTTTTTTACCGATATTAGGCATT   1185

BSNT_01248___   1180 CTTGCCTTCCTATTGCCAAGTGACCAGA--AGCT-------GAGAGAATG   1220
                     ||.||.|||.||.|.||.||.||.||.|  |.||       ||..|||| 
BPUM_0681       1186 CTGGCATTCTTACTACCTAGCGATCAAACCATCTCCAAATGGAATGAAT-   1234

BSNT_01248___   1221 GCATAGCTGA   1230
                      ||||.    
BPUM_0681       1235 -CATAA----   1239


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