Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01247 and BPUM_0680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_01247___yfnD.1.24716.seq
# -bsequence dna-align/BPUM_0680___yfnD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01247___yfnD-BPUM_0680___yfnD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01247___yfnD-BPUM_0680___yfnD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01247___yfnD
# 2: BPUM_0680___yfnD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1034
# Identity: 607/1034 (58.7%)
# Similarity: 607/1034 (58.7%)
# Gaps: 262/1034 (25.3%)
# Score: 1651.0
#
#
#=======================================
BSNT_01247___ 1 ----------ATGATT-------CATTCTCT-------CCATG------A 20
||.||| ||||.|.| ||||| |
BPUM_0680___y 1 ATGGCGTCTTATCATTTTACAACCATTGTGTCGAATACCCATGTTTTTAA 50
BSNT_01247___ 21 GCATT--GCGATGATT-----------------------TTCATTTA--- 42
||.|| |||.|.||| ||||||||
BPUM_0680___y 51 GCTTTTGGCGCTCATTCATTCGCTTGAACAAACCTCACGTTCATTTAAAC 100
BSNT_01247___ 43 TAT--GTGCTGTGTGTCGACCAGAAAGCGTA------------TGAATTG 78
||| ||..|.||||..||||.|...||.|| ||||||.
BPUM_0680___y 101 TATCGGTATTATGTGCAGACCCGTTGGCTTACCAGGTGTTAAGTGAATTT 150
BSNT_01247___ 79 CTTCA---GCACGTTCCATGGGAGCATGTAACCTTTGTGCAGCTGCATGA 125
|.||| ||||||.|.|| |||.| ||||| |||
BPUM_0680___y 151 CCTCATCCGCACGTGCAAT------ATGAA---------CAGCT---TGA 182
BSNT_01247___ 126 A---ATGGAAGACCCGGAGCTGTTGAAA----GCGAAAAGCAACAGA--- 165
| ||.||||| |||.| ||||||.||||..||
BPUM_0680___y 183 AAATATTGAAGA-----------TGACAAGCTGCGAAAGGCAAAGGATGA 221
BSNT_01247___ 166 ----ACGTTTCATGAATATTGCTGGACGTTAAAGCCCGCCTTTTTGTT-- 209
|||||||||||.||||||||||||||||||||.||.|||.||.|
BPUM_0680___y 222 TCGGACGTTTCATGAGTATTGCTGGACGTTAAAGCCTGCTTTTCTGCTCA 271
BSNT_01247___ 210 ---TCATGTGATGAGCAAGTGGGAT-----GACGCTGAATACTTTGCCCA 251
||.| ||| || ||.||.||.||..|.|||||
BPUM_0680___y 272 AAATCCT----TGA---------ATCTTCGGAAGCGGATTATCTCGCCCA 308
BSNT_01247___ 252 TATGGATACGGATCTATTTTTCTTTTC-TGATCC---GGCACGTATTTTT 297
|.|||||||||||.|.|.||| ||.|| |||||| ||| .||||||
BPUM_0680___y 309 TTTGGATACGGATTTGTATTT-TTATCATGATCCAGAGGC---GATTTTT 354
BSNT_01247___ 298 GCAGAAAACCCAACGGCGTCTCTGTA--TTTGACTGATCATCGTAATTCG 345
||.||.||.|||...|| ||.|| || ||||||.||||||...|||||.
BPUM_0680___y 355 GCTGAGAATCCACTTGC-TCACT-TATTTTTGACAGATCATATGAATTCC 402
BSNT_01247___ 346 CCGCGCTTCATGTC-CTACTACGACCGAA----CCGGACGCTTTAATACA 390
..|||.||| |.|| ||..|| .||| |.||.|||||||||||.
BPUM_0680___y 403 GAGCGGTTC-TATCACTTTTA----TGAATTGTCTGGCCGCTTTAATACT 447
BSNT_01247___ 391 GGCTTTGTCGG-TGCCGGTAATACAAAGG-----AAGCATATGAAGCGGT 434
||.|||||||| |||| ||||.|||.|.| ||.|.| |||||
BPUM_0680___y 448 GGATTTGTCGGCTGCC-GTAACACAGACGTTGCCAAACGT-----GCGGT 491
BSNT_01247___ 435 GTGGCAGTGGAGACAGG---ACTGTATTGAATTTTGCACGGTCGAAATGG 481
....||.|||| ||| |||||.|||.|...||.||.||||||||||
BPUM_0680___y 492 CACACAATGGA---AGGAAAACTGTCTTGCACACTGTACAGTCGAAATGG 538
BSNT_01247___ 482 ATACGGAACGAAAGACATATGGTGATCAAAGATATGTGGAGAAATGGCCG 531
||||..||...|||||.|||||.|||||..|.|||||.||.|.||||...
BPUM_0680___y 539 ATACAAAAAATAAGACGTATGGAGATCAGCGGTATGTTGAAAGATGGATC 588
BSNT_01247___ 532 GAGCAGTTTAAAGGTGTTCATGTTGTCAAATCCATAGGAGCCAATACAGC 581
||..|.|||.||||.||||||||.||.|.|||.|.||||||||||.|.||
BPUM_0680___y 589 GATGATTTTGAAGGCGTTCATGTCGTAACATCTAAAGGAGCCAATGCTGC 638
BSNT_01247___ 582 GCTTTGGAATATCGAAAACTATAAG------GTCGGGCAAAAGGACGGCC 625
|.|.||||||||.||||||||.||| ||.|.| |||||
BPUM_0680___y 639 GATCTGGAATATTGAAAACTACAAGCTTTCCGTTGTG--AAAGG------ 680
BSNT_01247___ 626 GCG----TGTATATAGATGAAACGCCGCTGATTTTCTATCATTTCTCTGG 671
| |||||.|.||.|||...||.||..|.|||||||||||.||||.
BPUM_0680___y 681 --GGATATGTATCTCGACGAATGTCCACTCTTGTTCTATCATTTTTCTGC 728
BSNT_01247___ 672 GTTTA----CACTGGTGACAGAAAAAGAGTTTAATCT---TTGCTGGTAC 714
.|||| ||.||.|| ||||.| .||||||||| |||.|..|||
BPUM_0680___y 729 CTTTACAATCATTGATG--AGAATA--CGTTTAATCTGAATTGGTATTAC 774
BSNT_01247___ 715 TATCGGATTGAAGAC-GAAGCGACAAT----TGAGATGA--TTTATATGC 757
||| |.||| ||| .|.||| || |||.| |.|||||.|
BPUM_0680___y 775 TAT-------ATGACAGAA--CAAAATCTAGTG-GATCATCTCTATATTC 814
BSNT_01247___ 758 CGTAT----ATATTAAATC-TGAAAAGATGGATTGATGAAA----TAC-- 796
||||| || ||||.|| |.|||| |||.||| |||
BPUM_0680___y 815 CGTATGCTGAT-TTAATTCATCAAAA--------GATTAAACAGGTACAA 855
BSNT_01247___ 797 --AGTCGGCGTTTCCGGACTTTGCGGATGGCTTTATCCCGAAGCACGCA- 843
|||| |||||.||.|||..|.|.||.|||||..|.||| |..||
BPUM_0680___y 856 AAAGTC----TTTCCAGAATTTCAGCAAGGATTTATTACAAAG-AAACAT 900
BSNT_01247___ 844 GTGCCTGACACTCA-TTTTATCCAGCTGGATTAA 876
||.|||||.||.|| |||||| .||.| ||.|
BPUM_0680___y 901 GTTCCTGATACGCATTTTTAT-GAGAT--ATGA- 930
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