Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01246 and BPUM_0679
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:50
# Commandline: needle
# -asequence dna-align/BSNT_01246___yfnE.1.24716.seq
# -bsequence dna-align/BPUM_0679___yfnE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01246___yfnE-BPUM_0679___yfnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01246___yfnE-BPUM_0679___yfnE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01246___yfnE
# 2: BPUM_0679___yfnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1362
# Identity: 787/1362 (57.8%)
# Similarity: 787/1362 (57.8%)
# Gaps: 354/1362 (26.0%)
# Score: 2078.0
#
#
#=======================================
BSNT_01246___ 1 ----GTGA-AAGC-------AAGCGTTATTATTCC-TGCATATAATTCGA 37
.||| |||| ||||||.|||||||| .|| ||||||.|.|
BPUM_0679___y 1 ATGAATGAGAAGCCAAAGGTAAGCGTCATTATTCCGAGC-TATAATGCCA 49
BSNT_01246___ 38 AGGAGCGTCTTTACAA--CAGCCTTCTGTCATTAAACCAGCAGGAGTGCG 85
||||||| ||||.|| .||.|||.|.||.||||..|..||||| |.||
BPUM_0679___y 50 AGGAGCG--TTTAGAAGGGAGTCTTTTTTCCTTAACTCTTCAGGA-TACG 96
BSNT_01246___ 86 ATGAAGA------ATTTGAAGTCATTGTAGCGGACAATGGCTCTGAGGAC 129
|| .||||||||||||||.||.||.|||||.||...||||
BPUM_0679___y 97 -----GATATTCCGTTTGAAGTCATTGTCGCCGATAATGGGTCAATGGAC 141
BSNT_01246___ 130 GGGACGCTCTCGATGCTTGAG-TCATTTCAAGCTGATTTTCCGCTGATC- 177
||.|||.|....||||||||| .|||| .||.|||.||||| |
BPUM_0679___y 142 GGCACGATGGAAATGCTTGAGAACATT--GAGGTGAATTTCC------CG 183
BSNT_01246___ 178 TTTACA------CGGATTAAAG-AAAACAGGGGCATTGCGTACGGACGAA 220
||||.| ||.|||...| .||.||.||| |||||..|.||.||.|
BPUM_0679___y 184 TTTAAAAAGGTGCGTATTCCTGTCAATCAAGGG-ATTGCCAAGGGTCGTA 232
BSNT_01246___ 221 ATCAGGCGCTTCGCAATGCCAG-AGGAGACATCCTGATTTTCCATGACAG 269
||||.||..|||||.| |.||| |||||||.|..||||.|||||||||||
BPUM_0679___y 233 ATCATGCCATTCGCGA-GGCAGAAGGAGACCTGTTGATATTCCATGACAG 281
BSNT_01246___ 270 CGATATGCTTGCGGCAAAGGACCTTGTGGCAAAACATATT--AAAGCCCA 317
.|||||||| ||||.|| || || ||..|||| |||| ||
BPUM_0679___y 282 TGATATGCT---GGCAGAG--CC-----GC--AATTTATTCAAAAG--CA 317
BSNT_01246___ 318 TGAGAACG------------AAGAGAATCTCGTCGTGTGCGGGTTGTTT- 354
||.|.|.| |||||.|.||.|||.|.||.|| |||.|
BPUM_0679___y 318 TGCGGAGGCACATGCTCATCAAGAGGACCTTGTCATTTGTGG--TGTATG 365
BSNT_01246___ 355 -TGGAAACGGATCTACAG---TTTTTACTATGAACGATTTGAAGAAGAAC 400
|||||.|||||.||..| ||||||| |||..|||||
BPUM_0679___y 366 CTGGAAGCGGATTTATCGATATTTTTAC---GAAGCATTTG--------- 403
BSNT_01246___ 401 ATAAGGAACAGCTC--GC-------AAAGCTCACAGGT-----------G 430
|||||||.||..|| || ||||| .|||| |
BPUM_0679___y 404 ATAAGGATCATATCAAGCGATTGAAAAAGC---AAGGTTTGTATAAACGG 450
BSNT_01246___ 431 AAATGCCGAAGAAAGACAAACAAAAGCTGC---------TGGAGGAAGCG 471
||| |.||||||.| |||.||..| ||.|.||||.|
BPUM_0679___y 451 AAA-----ATGAAAGATA---AAACGCCTCTTTTATCCATGCAAGAAGTG 492
BSNT_01246___ 472 GACATCAAAAACGGAA----GC-TTTCTTGATAAAAGCTTTGACCTCGAT 516
|| ||| || |||||.||.|||||||||||..|..|.
BPUM_0679___y 493 GA-----------GAATGGTGCATTTCTAGAGAAAAGCTTTGATTTGCAG 531
BSNT_01246___ 517 ACCGACTTTATAGACGTGCTCAAGAAGATTTTAGATG----AGTACGGCG 562
.|.||.|||||.||..|.|||||..|.|||| || .||||..|.
BPUM_0679___y 532 TCTGAGTTTATTGATATTCTCAAAGACATTT----TGCGCACGTACAACT 577
BSNT_01246___ 563 ATGACTTGAAAGGC---TATCATATGCCATGGCGCTTTTTTATCACGAAT 609
||||.|| |||| |||.|..||||.|||||.||||||||.||||||
BPUM_0679___y 578 ATGATTT---AGGCTCTTATGAGTTGCCGTGGCGATTTTTTATTACGAAT 624
BSNT_01246___ 610 AATTCCTCTGTGAAACGCAAGCATGTGGTTGACCTCGGTTTATTTGACGA 659
|||||||||||.|||||.||||||||..|.|..|||||..|.|||||.||
BPUM_0679___y 625 AATTCCTCTGTCAAACGGAAGCATGTCATCGCGCTCGGGATGTTTGATGA 674
BSNT_01246___ 660 AGGCATTGTGCGGTACGGGTTTGAGGATTATGACCTCGGGATCAGGCTTC 709
|...||.||.|||||||||||||||||||||||..|.||.||..|.||.|
BPUM_0679___y 675 AAAGATCGTTCGGTACGGGTTTGAGGATTATGATTTAGGCATTCGTCTGC 724
BSNT_01246___ 710 ATCAGGCCGGATTGACCTTCAGGCTTCGCCGT-------------GATAT 746
||||| ||| ||..||.||.| |||||
BPUM_0679___y 725 ATCAG-----------CTT--GGTCTCTCCTTTGAATTGCGAGAGGATAT 761
BSNT_01246___ 747 TGTCAGTGTTCATCAGGAACATCCAAGCAATTGTAA-GTCTGTAGACGAT 795
..|.||.||.||||||||||||||.||.|||| ||| .|||.|.||.||.
BPUM_0679___y 762 CCTGAGCGTGCATCAGGAACATCCGAGTAATT-TAACATCTTTTGATGAC 810
BSNT_01246___ 796 ATTCGGGCA-----AACATTGCCTATATGTGCGATAAATACAATAACATC 840
|| || ||||||...|||||||||||.||.|||||.||.||
BPUM_0679___y 811 AT-----CAAATATAACATTTTGTATATGTGCGAGAAGTACAACAATAT- 854
BSNT_01246___ 841 CGCT-CCTTAGACGTTCATCTCGCTTTTAATGGGCCGTT-------CCCG 882
.|.| ||.|.||.||.|||||.|||||...|||.||||| .|||
BPUM_0679___y 855 TGATGCCATTGATGTCCATCTGGCTTTCTCTGGTCCGTTTTCTCACACCG 904
BSNT_01246___ 883 CCTGACATGAC----GAACAGA-ATCATGGCTGATATTCAAAAGCTGCTG 927
.|..|.||||| .||.||| ||.| ||| ||||||..
BPUM_0679___y 905 TCACAAATGACATTGTAAAAGAGATTA-GGC-----------AGCTGCGT 942
BSNT_01246___ 928 GAATCACAGAAATATGATAT-------GCTGCTGAATCT--GTTTCTTGA 968
|| ||||..|.||| .||||| .||| .|||.|.||
BPUM_0679___y 943 GA-------AAATCCGGTATTCGATGGTCTGCT--CTCTTATTTTTTAGA 983
BSNT_01246___ 969 GCTTCTGCATGTTG-TTAAAGAGCGCAA------CATTGATCCGGATTGG 1011
|.|.||.||| ||| |.|.||||||.|| |||..|.|.||||
BPUM_0679___y 984 GTTGCTTCAT-TTGATCACAGAGCGGAATGTAGGCATCAAACGGGAT--- 1029
BSNT_01246___ 1012 CGAAAGAA-ATCCCCAAGGGTGACGGCGAAA-----AGCTTTGATTTGCA 1055
|||.|| ||| .|.||||.|||||| ..|||||| |
BPUM_0679___y 1030 --AAAAAAGATC-----AGCTGACAGCGAAACATGTCCCTTTGA-----A 1067
BSNT_01246___ 1056 AA--CTGTC--------CGCAAGCTTCTGCCTAAGGCGAAGAAAAAGCTA 1095
|| ||||| ||||| || ||| |.||| ||||| ||
BPUM_0679___y 1068 AAAGCTGTCAGAGATAGCGCAA-CT--TGC--ACGGC-AAGAA-----TA 1106
BSNT_01246___ 1096 -GGCGTGAAC---GATTTT----GCCA---ACGCACTG------------ 1122
||| ||.|| |.||.| |||| |.|..|||
BPUM_0679___y 1107 TGGC-TGCACAGTGCTTGTTGAAGCCATTCAAGGGCTGACGAAAGAGCTA 1155
BSNT_01246___ 1123 -TATGCGCTTGTCAACGATTTGCTGCACGTGGATCT----TAGATCATTG 1167
||.|||.| ||||||.|.||.||||||.| |||
BPUM_0679___y 1156 TTACGCGTT-------GATTTGTTTCAAGTGGATGTGTTGTAG------- 1191
BSNT_01246___ 1168 GATGTGGTATAA 1179
BPUM_0679___y 1191 ------------ 1191
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