Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01245 and BPUM_0678
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:49
# Commandline: needle
# -asequence dna-align/BSNT_01245___yfnF.1.24716.seq
# -bsequence dna-align/BPUM_0678___yfnF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01245___yfnF-BPUM_0678___yfnF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01245___yfnF-BPUM_0678___yfnF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01245___yfnF
# 2: BPUM_0678___yfnF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity: 617/1023 (60.3%)
# Similarity: 617/1023 (60.3%)
# Gaps: 222/1023 (21.7%)
# Score: 1719.5
#
#
#=======================================
BSNT_01245___ 1 GTGACCAGCGCGTATTGCACCGTTTTATCAAAAGGAAGATTATATCAGGC 50
.|||.||||...|||||.||.|||.||||||..||||||.|||||||.||
BPUM_0678___y 1 ATGAACAGCATATATTGTACGGTTCTATCAAGTGGAAGACTATATCAAGC 50
BSNT_01245___ 51 AGT--CGCTTTGTTTAAGTCGTTAGAGCTAGT--------------TGAT 84
..| ||.|||..||| ||.||..|||.||| |.||
BPUM_0678___y 51 CATTGCGTTTTTCTTA--TCATTGAAGCAAGTAGAAAATGGTGCTGTCAT 98
BSNT_01245___ 85 CAAGACAGTCCCATTTTTATACTTTGCATGGATGAAGATACGCACCGCGT 134
|||||| || |.||.||||||||.| |.||.|
BPUM_0678___y 99 CAAGAC-GT-------------TATGTATGGATGATG-------CTGCAT 127
BSNT_01245___ 135 GTTACAGAAGCTG-------AAGATGAA------GCAGCTGAACCTTGTG 171
.| ||.||| || ||||| .||..|..|.|||||
BPUM_0678___y 128 TT-----AATCTGCTTCATCAA-ATGAATTTTCCTCATGTCGATCTTGT- 170
BSNT_01245___ 172 CCGGTGGCCGCTCTTGAAAATGAATTGCT------TCTGAAGCTGAAGGA 215
||.||.|..||| ||| .|.|.|||||
BPUM_0678___y 171 -----------TCATGTACGTGA---GCTCGAAACGCCGGAGCTG----- 201
BSNT_01245___ 216 AACTAGAGATCAAAG----------------TGAGTATTGCTGGACGATG 249
||.||||..|||| .||.||||||||||||.|.
BPUM_0678___y 202 --CTGGAGAAAAAAGAGGAACGGGATGCCTCGGAATATTGCTGGACGTTA 249
BSNT_01245___ 250 AAGCCGATCTTTCTGCAAGCTGTG-----CTGAATAGCAATCCCGGGCTG 294
||||||| |.||.|....||| .||||.||.| .|.|||.|
BPUM_0678___y 250 AAGCCGA----TGTGGATTGAGTGGTTATTTGAACAGGA---GCAGGCAG 292
BSNT_01245___ 295 -GAGCGTGTGACGTATATTGACGGGGATCTCTTTTTCTATGCAGATCCAT 343
|||| ||.||.|||.||||.|.||||.|.||.||.|||| |||.||
BPUM_0678___y 293 AGAGC--GTAACCTATCTTGATGCGGATTTGTTCTTTTATG-AGAGCC-- 337
BSNT_01245___ 344 CGC---CGATTTTTGAAAACCAGCCGGACTG-CTCGGTGTTGCTTTCACG 389
||| .|||||||.|..|.|||||||| || |||.||.||.|||||..|
BPUM_0678___y 338 CGCAAGTGATTTTTCAGCATCAGCCGGA-TGCCTCTGTATTACTTTCGAG 386
BSNT_01245___ 390 AGGGGATATTGTAATCC----CTTC--TTTTGAGAAAGAGCAGATTGACA 433
||||||||||||.||.| |||| |..||||.|||.|.|| |
BPUM_0678___y 387 AGGGGATATTGTGATTCCGAGCTTCGATCCTGAGGAAGTGAAG------A 430
BSNT_01245___ 434 TGCTGCAGCGTCTTTTAGGCAGATATAATTCCGGGTTTAT-CAGCTTCAA 482
||||.|||...|||||||||.|.||||||||.||.||..| ||..||.||
BPUM_0678___y 431 TGCTTCAGAAGCTTTTAGGCCGCTATAATTCAGGCTTCCTGCATTTTAAA 480
BSNT_01245___ 483 GCATGATGATGCAGGCACGG--ATTGCTTGGAG-TGGTGGAAGGAACGCT 529
|.| |||||.||.||| ||| ||..||| || ||||||||.|||...|
BPUM_0678___y 481 GGA-GATGAAGCTGGC-CGGAAATGCCTT--AGCTGGTGGAAAGAAGAAT 526
BSNT_01245___ 530 GTCTTG-AGGAATGCAAAAATGCACCGGGTGAAGGGAAATTCGGTGATCA 578
| |||| ||||||||||||||||.|||||||||||.||.||.||.|||||
BPUM_0678___y 527 G-CTTGAAGGAATGCAAAAATGCGCCGGGTGAAGGCAAGTTTGGCGATCA 575
BSNT_01245___ 579 GGGCTATTTGGATTATATGTCTGAGCTGTTTCCGAATGTGTGTGACATTA 628
.||.|||.|.|||.|||||.|..||||||||...||.|||...||.|||.
BPUM_0678___y 576 AGGTTATCTCGATCATATGCCGAAGCTGTTTGAAAAAGTGGAGGATATTC 625
BSNT_01245___ 629 CAACACCCGGCGTGAACATCGGCCATTGGAATTATGGACAGCATACGTTT 678
.||||...||||||||.||.||.||||||||.|||||.||||||.| .|.
BPUM_0678___y 626 AAACAAAAGGCGTGAATATTGGTCATTGGAACTATGGGCAGCATTC-CTA 674
BSNT_01245___ 679 TCCTG--GAAAGATGGCCGGATCGTGCTGGAGGAT-GGCAGTCCGCTGAT 725
||.|| |||| ||||.|||||..||||||||||| |||| ||||||.||
BPUM_0678___y 675 TCGTGAAGAAA-ATGGACGGATTTTGCTGGAGGATGGGCA-TCCGCTCAT 722
BSNT_01245___ 726 CTTTTATCATTTCAGCGGATACCGAATCGTCAGCATCAATGAAATCAAAC 775
.|..|||||||||||.||.|..||.|||||.||.|...||||.||..|.|
BPUM_0678___y 723 TTGCTATCATTTCAGTGGCTTTCGCATCGTGAGTAAGGATGAGATGCAGC 772
BSNT_01245___ 776 AGATTCATGAAACAACCCGCACA----------GATCTGCCGTTTGTGCA 815
|.||||||||.| | ||||||||||||.|.||
BPUM_0678___y 773 AAATTCATGAGA----------AGGGGAGAGAGGATCTGCCGTTTTTCCA 812
BSNT_01245___ 816 TGAACTGTATCAAGAGACAC-TGC--CG-CATATCATTCAGCACAT---- 857
.|||...|||| ||.|| ||| || |||.|.|||.| ||
BPUM_0678___y 813 AGAAGCCTATC----GAAACGTGCTACGTCATGTGATTGA----ATCTGT 854
BSNT_01245___ 858 ---GCAAACGTTAGACCC--TGAATTTAACGGTTTTGCTTCAA------- 895
||| |.|.||.|| || ||||||||.|.||| |||
BPUM_0678___y 855 TGAGCA---GGTCGATCCGATG--TTTAACGGCTATGC--CAAAGTTGAG 897
BSNT_01245___ 896 -AAGATGAC-----AACAAATAA 912
|.|||||| |
BPUM_0678___y 898 GAGGATGACGCATGA-------- 912
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