Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01362 and BPUM_0660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:58
# Commandline: needle
# -asequence dna-align/BSNT_01362___malP.1.24716.seq
# -bsequence dna-align/BPUM_0660___malP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01362___malP-BPUM_0660___malP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01362___malP-BPUM_0660___malP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01362___malP
# 2: BPUM_0660___malP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1748
# Identity: 1036/1748 (59.3%)
# Similarity: 1036/1748 (59.3%)
# Gaps: 331/1748 (18.9%)
# Score: 2525.0
#
#
#=======================================
BSNT_01362___ 1 ATG-ATGCAAAAAATTC-AGCGCTTTGGAAGCGCGATGTTTGTGCCTGTT 48
||| |||||| || ||||.|||||.||.||.|||.|.||.||.||.
BPUM_0660___m 1 ATGAATGCAA-----TCAAGCGATTTGGCAGTGCTATGGTAGTTCCAGTC 45
BSNT_01362___ 49 TTATTATTCGCGTTCGCCGGCATTATCGTCGGTAT-----CAGCACGCTC 93
.|.|||||||||||....||.|||.|.||||||.| ||..|.||
BPUM_0660___m 46 CTTTTATTCGCGTTTTTTGGTATTGTTGTCGGTCTTGCGACATTATGC-- 93
BSNT_01362___ 94 TTTAAAAATAAAACCCTCATGGGCCCGCTCGCCGATCCCGACGGT---TT 140
||.|||..|.|..|.|||||...|.|.|| |.|.||.||| .|
BPUM_0660___m 94 ---AAGAATCCAGCGATTATGGGGGAGATGGC---TGCAGAAGGTACAAT 137
BSNT_01362___ 141 TTGGTATCAGTGCTGGTATA-TTATTGAGCAG-GGCGGCTGGACTGTTTT 188
.||||||.||...||| |.| |.||||| .|| ||.||.|||||..||||
BPUM_0660___m 138 GTGGTATAAGATTTGG-ACACTGATTGA-AAGTGGAGGATGGACGATTTT 185
BSNT_01362___ 189 TAACCAAATGCCGCTCTTATTCGCCATCGGCATCCCGGTTGCTTTGGCGA 238
.||.||.|||..|||...|||.|..||.|||.|.||..|..||.|.||.|
BPUM_0660___m 186 CAATCATATGGAGCTGGCATTTGTGATTGGCTTGCCAATCTCTCTTGCAA 235
BSNT_01362___ 239 AGAAAGCTCAGGCACGCGCTTGTTTGGAAGC-----GCTTACTG----TT 279
|.|||||.||.|||||.||| |.|| |||| || ||
BPUM_0660___m 236 AAAAAGCGCAAGCACGTGCT-------ACGCTCGCAGCTT--TGATGATT 276
BSNT_01362___ 280 TACCTGACATTCAACTATT-TTGTCAGCGCGATATTGACGGTATGGGGAG 328
||.||...|||.|||.||| |..||| .||.||.|||||..|.| ||..
BPUM_0660___m 277 TATCTTGTATTTAACAATTATATTCA-TGCTATTTTGACACTTT--GGCC 323
BSNT_01362___ 329 GAGCA--TTTGGCGTCGACATGAAC-CAAGAGGTCGGCGGAACG-AGCGG 374
|..|| |||||.||.|| .|.|.| ||||..|||| .||||| |||||
BPUM_0660___m 324 GTCCACTTTTGGTGTTGA-TTTATCGCAAGGAGTCG--AGAACGTAGCGG 370
BSNT_01362___ 375 GT-TAACGATG--ATTGCAGGCATAAAAACGCTCGATACCAACATTATCG 421
|| ||| |.| ||||||||.||....|||||||||||.|..||.||.|
BPUM_0660___m 371 GTGTAA--AAGAAATTGCAGGTATCCCTACGCTCGATACAAGTATCATTG 418
BSNT_01362___ 422 GAGCCAT--CTTTATTTCTTC--GATTGTCGTCTTTT---TGCATAACCG 464
|.||..| |..|| || || .|||||.||| |.|||||.||
BPUM_0660___m 419 GTGCGGTGGCGATA-----TCAGGA--ATCGTCATTTGGATTCATAATCG 461
BSNT_01362___ 465 CTATTTTGATAAAAAACTGCCCGATTTTCTCGGCATCTTTCAA-GGCTCA 513
.|.||.||||.||||||||||.||..|.|||||.||.||.||| ||||..
BPUM_0660___m 462 TTTTTATGATCAAAAACTGCCTGAAATGCTCGGGATTTTCCAAGGGCTTG 511
BSNT_01362___ 514 ACATATATCGTGATGATTTCCTTCTTTATTATGATTCCGATTGCCTTGGC 563
.| |.|.|.||.||.||....||||||.|.||||||||.|||||.||...
BPUM_0660___m 512 TC-TTTGTTGTCATCATCGGATTCTTTGTGATGATTCCTATTGCTTTTAT 560
BSNT_01362___ 564 TGTGTCTTATATTTGG-CCGATGGTTCAATCGGGAATCGGCTCGCTTCAA 612
.|||.|||.|.|.||| ||.|| |||||...||||||....||.||.|||
BPUM_0660___m 561 CGTGGCTTTTGTATGGCCCTAT-GTTCAGCAGGGAATTCAATCTCTCCAA 609
BSNT_01362___ 613 AGCTT----------CCTGGTT-GCTTCTGGGGCGGTG---GGC-GTTTG 647
.|.|| .|||||| ..|| |||| ||| ||||
BPUM_0660___m 610 GGGTTTATGTCACAGTCTGGTTATATT-------GGTGTCTGGCTGTTT- 651
BSNT_01362___ 648 GATATACACGTTT-TTGGAACGGATTTTAATTCCGACCGGCCTTCATCAC 696
|.||| ||||||.||.|.||.|||||.||.||.|||||.||.
BPUM_0660___m 652 --------CATTTCTTGGAAAGGGTGTTGATTCCAACAGGACTTCACCAT 693
BSNT_01362___ 697 TTTATTTACACGCCGTTT-ATTTATGGCC---CGGCTGTAGCGGAA-GGA 741
||||||||.||.||.||| |.|| |||.| ||||.||| || |||
BPUM_0660___m 694 TTTATTTATACACCTTTTGAGTT-TGGTCCAGCGGCAGTA----AATGGA 738
BSNT_01362___ 742 GGGATCGTCA----CGTATTGG---GCACAGC----ATCTCGGCGAATAT 780
|| ||.| |.|||||| ||.|| | || ||||.|
BPUM_0660___m 739 GG----GTTAAAACCATATTGGATTGCTCA-CTTAAAT------GAATTT 777
BSNT_01362___ 781 TCGCAAAGCGCCAAACCGC-----------TGAAGGAGCTCTTTCCGCAA 819
.|| |||.| |||||||.||.|.||| |
BPUM_0660___m 778 GCG-----------ACCTCAACTTCCGATTTGAAGGATCTATATCC---A 813
BSNT_01362___ 820 GGCGGATTCGCGCTTCACGGCAACTCGAAA-------ATCTTCGG-TATT 861
..|||||| ||.||.||| |.|||| ||.||||| |.||
BPUM_0660___m 814 TACGGATT-----TTTACTGCA--TGGAAATATTAAGATGTTCGGCTGTT 856
BSNT_01362___ 862 CCGGGTATCGCCCTGGC------TTTTTATGTGACAGCCAAAAAGGAAA- 904
..||| ||.||.||.|| ||.||.| |.||..||||.|||
BPUM_0660___m 857 TAGGG-ATAGCTCTAGCGATGTATTATTCT-----ACCCCGAAAGAAAAC 900
BSNT_01362___ 905 AGAAAAAA--CTCGTCGCAGGGCTGCTGATT-CCTGTCACACTGACAGCG 951
|||||||| .|| |||||..|.| ||| ||.|.||||.|.||||||
BPUM_0660___m 901 AGAAAAAAGGTTC-TCGCATTGGT----ATTACCCGCCACATTAACAGCG 945
BSNT_01362___ 952 ATTGTCGCCGGTATTACAGAGCCAATTGAGTTTAC-GTTCTTATTCATTT 1000
.|..|.||.||.||||||||.|||.||||.||||| .||||..||| |..
BPUM_0660___m 946 GTATTTGCTGGAATTACAGAACCACTTGAATTTACATTTCTGTTTC-TCG 994
BSNT_01362___ 1001 CACCTTTCTTATTTGCGGTTCACGCCGTGCTTGCCGCCACAATGTCGACA 1050
|.||||.||||||||...|.||.||..|.||||..||.||.|||..||||
BPUM_0660___m 995 CGCCTTACTTATTTGTCATACATGCACTTCTTGGAGCGACCATGGTGACA 1044
BSNT_01362___ 1051 GTTATGTATATGGCCGGCGTCGTCGGAAACATGGG----GGGCGGACTGA 1096
.|.|||.|||||...||.||.|||||||..||||| ||| ||.|
BPUM_0660___m 1045 ATCATGAATATGTTTGGTGTTGTCGGAATGATGGGTTCAGGG----CTTA 1090
BSNT_01362___ 1097 TCGA---AGCGGTAACCTTGAACTGGATTCCGCTCTTTGGAAGCCACGGT 1143
|.|| |||.| |.||||||||||||||||||..|..||..||.||.
BPUM_0660___m 1091 TAGAAATAGCTG---CATTGAACTGGATTCCGCTCGCTTCAAATCATGGA 1137
BSNT_01362___ 1144 ATGACATATGT-AT-------ATCAAATTTTGATCGGACTCTC-GTTTAC 1184
..|||.|||.| || ||| ||.||||| || .|||||
BPUM_0660___m 1138 GGGACTTATCTGATCCAGGCCATC--------ATTGGACT-TCTATTTAC 1178
BSNT_01362___ 1185 AGCAATTTATTTTTTCGTCTTCAGATTTTTAATCCTCAAATTCAATATCG 1234
.|||.|.||||||.||.|.||.||||...|.||..|.|||||..||||..
BPUM_0660___m 1179 TGCATTGTATTTTGTCATATTTAGATGGGTGATTGTGAAATTTGATATTC 1228
BSNT_01362___ 1235 CTACACCAGGACGGGAAAAGGATGAACAGCAGGAAACAAAGCTATATTCG 1284
|...||||||||| |||..||| ||.||||.||.|.|||||||.|.
BPUM_0660___m 1229 CATTACCAGGACG---AAAACATG---AGGAGGAGACTAGGCTATATACA 1272
BSNT_01362___ 1285 AAAAAGGAATATAGAGA-----AAGAAAAAA--------CAAGGATGAAA 1321
|||.|.||.||| |||| ||.|||||| |||..|.|||.
BPUM_0660___m 1273 AAACAAGATTAT-GAGAATGCTAATAAAAAAGATCATGGCAAAAAGGAAG 1321
BSNT_01362___ 1322 CGGCC---TCCGCTGCTGAAACGGCTGATGACACCGCTTTTCTGTATATT 1368
||.|| |..||..|||| |..|||.||.|..|||.|| |||.||
BPUM_0660___m 1322 CGCCCGTTTATGCGTCTGA---GTATGAAGAGAAAGCTGTT---TATTTT 1365
BSNT_01362___ 1369 ---GAAGCGCTGGGCGGAAAAGACAACATCACTGAAGTCACAAACTGCGC 1415
|.||..||.||.||||||||.||.||.|..||.||.||||||||.||
BPUM_0660___m 1366 TTAGGAGGACTTGGTGGAAAAGAAAATATTAAAGATGTGACAAACTGTGC 1415
BSNT_01362___ 1416 AACCCGCCTCAGAGT----CAGTG------TCAAG---GATGAAACAAAG 1452
.||.|| ||.|.|| ||||| .|.|| |.|||||.|.||
BPUM_0660___m 1416 TACACG--TCTGCGTATTACAGTGATTGACCCTAGCTTGGTGAAAGATAG 1463
BSNT_01362___ 1453 GTTGAA-----CCCGACAACGTATTCCGCGCGCTTGGCGCAC---ACGGC 1494
| ||| |.| |.|||.|| ...||||.||| |.|||
BPUM_0660___m 1464 G--GAATACTTCAC-AAAACATA--------AAATGGCACACGGAATGGC 1502
BSNT_01362___ 1495 -----GTTGTCAGGAACGGGAAGGCGTTTCAGGTGATTATCGGATTAAGC 1539
||.|||| ||| ..||||..|.|||.|.||.|||||.
BPUM_0660___m 1503 TAAGAGTGGTCA--------AAG--CATTCAAATCATTGTTGGCTTAAGT 1542
BSNT_01362___ 1540 GTACCGCAGATGCGGGAG---CGTGTGGAAAAATTACTGAATGAATAG 1584
||||||||..||.|.||| ..||.||.||||.| |.||
BPUM_0660___m 1543 GTACCGCAAGTGAGAGAGTCCTTTGAGGCAAAACT--TTAA------- 1581
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