Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01340 and BPUM_0657
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:56
# Commandline: needle
# -asequence dna-align/BSNT_01340___yfjN.1.24716.seq
# -bsequence dna-align/BPUM_0657___yfjN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01340___yfjN-BPUM_0657___yfjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01340___yfjN-BPUM_0657___yfjN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01340___yfjN
# 2: BPUM_0657___yfjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1024
# Identity: 751/1024 (73.3%)
# Similarity: 751/1024 (73.3%)
# Gaps: 74/1024 ( 7.2%)
# Score: 2764.5
#
#
#=======================================
BSNT_01340___ 1 ATGAAAGGATTTGAATGTATTATGACAGATAATTTCTGGCGTGAATTGCC 50
||||...|.||||||||||||||.||.||
BPUM_0657___y 1 ---------------------ATGAGTAAAAATTTCTGGCGTGATTTACC 29
BSNT_01340___ 51 ACGGCCATTTTTTGTACTGGCACCAATGGAAGATGTGACAGATGTTGTTT 100
||||||.||||||.||.|.||||||||||||||.||||||||||||||.|
BPUM_0657___y 30 ACGGCCGTTTTTTATATTAGCACCAATGGAAGAAGTGACAGATGTTGTGT 79
BSNT_01340___ 101 TCCGGCATGTAGTAAGTGAAGCAGGC-AGACCGGATGTATTTTTTACAGA 149
|.||.|||||.||.|||||.|| ||| |||||.|||||.|||||.|||||
BPUM_0657___y 80 TTCGTCATGTTGTGAGTGAGGC-GGCGAGACCTGATGTGTTTTTCACAGA 128
BSNT_01340___ 150 GTTCACAAACTCAGAGAGCTATTGCCACCCGGATGGGAAGGATAGTGTGC 199
|||.||.|||...||||||||||||||.||.|||||||...|.||||||.
BPUM_0657___y 129 GTTTACGAACAGCGAGAGCTATTGCCATCCTGATGGGATTCAAAGTGTGA 178
BSNT_01340___ 200 GTGGCCGTTTGACGTTTACAGAGGATGAACAGCCAATGGTAGCCCACATA 249
..||.|||||.||.||||||||||||||.|||||.||.||.||.||.||.
BPUM_0657___y 179 AGGGACGTTTAACCTTTACAGAGGATGAGCAGCCGATTGTTGCTCATATT 228
BSNT_01340___ 250 TGGGGGGATAAGCCTGAAAACTTCCGTAAAATGAGTATTGGCATGGCAGA 299
|||||.||.||||||||.|||||..|..|.|||||.|||||.|||||.||
BPUM_0657___y 229 TGGGGAGACAAGCCTGAGAACTTTAGACAGATGAGCATTGGAATGGCGGA 278
BSNT_01340___ 300 GTTAGGATTT-AAAGGCTTAGATATCAATATGGGCTGCCCTGTACCTAAT 348
.|||||.||| |..||||| |||||.|||||||||||.|||||.||.|||
BPUM_0657___y 279 ATTAGGTTTTCAGGGGCTT-GATATTAATATGGGCTGTCCTGTCCCGAAT 327
BSNT_01340___ 349 GTGGCAGG--GAATGGAAAGGGAAGCGGCCTTATTTGCCGTCCTGCAGTG 396
|| ||.| .||.||.|||||.||.||..|.|||...||.||.|..||.
BPUM_0657___y 328 GT--CACGCAAAACGGGAAGGGCAGTGGATTGATTCTACGCCCAGATGTT 375
BSNT_01340___ 397 GCGGCAGAATTAATACAAGCTGCAAAAGCAGGGGGATTGCCTGTAAGCGT 446
||||||||..|.||.|||||.|||||||||||||||||.|||||.|||||
BPUM_0657___y 376 GCGGCAGAGCTGATTCAAGCGGCAAAAGCAGGGGGATTACCTGTTAGCGT 425
BSNT_01340___ 447 GAAGACAAGACTTGGATACACGGATGTGGATGAATGGCGCGAGTGGCTGA 496
.||.|||||||||||.|..||.||.||.||||||||||.|||.|||||.|
BPUM_0657___y 426 CAAAACAAGACTTGGTTTTACAGAGGTTGATGAATGGCACGATTGGCTCA 475
BSNT_01340___ 497 CACACATTTTGAAACAGGATATTGCGAATCTT-TCTATTCATCTGCGTAC 545
.||||||||||.|.||.||.||||.||| ||| ||.||.||.||.|||||
BPUM_0657___y 476 GACACATTTTGGAGCAAGACATTGTGAA-CTTATCGATCCACCTTCGTAC 524
BSNT_01340___ 546 ----AAGGGCAGAAATGAGCAAAGTAGATGCGCATTGGGAGCTCATCCCG 591
||| |||||||||.|.||.||||||||||||||||||||.||.
BPUM_0657___y 525 TAGAAAG----GAAATGAGCCAGGTGGATGCGCATTGGGAGCTCATTCCT 570
BSNT_01340___ 592 GAGATTAAGAAACTTCGTGATGAGGTGGCACCAGATACACTGTTGACAAT 641
|||||||..||||||||||||||.||.|||||.|||||.||.|||||.||
BPUM_0657___y 571 GAGATTATAAAACTTCGTGATGAAGTAGCACCTGATACGCTTTTGACGAT 620
BSNT_01340___ 642 CAACGGAGATATCCCTGACCGCCAAACCGGCTTGAAACTTGCTGAACAAT 691
|||.||.|||||.|||||.||.|||||.|||||.||.||.||||||||.|
BPUM_0657___y 621 CAATGGTGATATTCCTGATCGTCAAACAGGCTTAAAGCTCGCTGAACAGT 670
BSNT_01340___ 692 ACGGCGTCGATGGCATTATGATAGGGCGCGGTATTTTTACA-AATCCATT 740
|.||.||.||.||..|.|||||.||||||||.| ||||.|| ||.|||||
BPUM_0657___y 671 ATGGAGTGGACGGTGTGATGATTGGGCGCGGGA-TTTTCCATAACCCATT 719
BSNT_01340___ 741 TGCCTTTGAAAAGGAGCCGAAAGAGCATAGCAGCAAG----GAATTGCTT 786
|||.||||||||.||||||||.||||||| |||| |||.|||||
BPUM_0657___y 720 TGCTTTTGAAAAAGAGCCGAAGGAGCATA----CAAGTGATGAACTGCTT 765
BSNT_01340___ 787 GATCTCTTAAGGCTGCATCTGGATCTTCATGAGAAATATTCAGCATTAGA 836
|.|||.|||||..|.|||||.||.||||||||..||||.|||.||.|||
BPUM_0657___y 766 GGTCTTTTAAGATTACATCTTGACCTTCATGATCAATACTCATCACTAG- 814
BSNT_01340___ 837 AGC--CCGTCCGTACAAGCCTCTTCCTCGCTTTTTCAAAATTTATCTCCG 884
|| .|||||.|.||||.|.||.|..||.||.||.||.||||||.|...
BPUM_0657___y 815 -GCTTGCGTCCATTCAAGGCACTGCACCGTTTCTTTAAGATTTATGTAAA 863
BSNT_01340___ 885 CGGGTTCCGAGGGGCAAGTGAATTAAGAAATCAATGCATGAACACAAAGT 934
.||.|||.||||.||.||.....|||||||.||||..|||||||||...|
BPUM_0657___y 864 AGGATTCAGAGGAGCGAGCTTCCTAAGAAACCAATTAATGAACACATCAT 913
BSNT_01340___ 935 CAACAGATGAAGTGCGTGCATTGCTCGACGACTTTGA---GAGAAAGTAT 981
|||||||||||||.||||||.||||.||.||.||.|| ||||||..|
BPUM_0657___y 914 CAACAGATGAAGTACGTGCAATGCTAGATGAATTCGAAGCGAGAAATCA- 962
BSNT_01340___ 982 CTTGATGGGGTAGAATAA------ 999
||||.||
BPUM_0657___y 963 -----------AGAACAATCATGA 975
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