Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01149 and BPUM_0647
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:47
# Commandline: needle
# -asequence dna-align/BSNT_01149___yerO.1.24716.seq
# -bsequence dna-align/BPUM_0647___yerO.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01149___yerO-BPUM_0647___yerO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01149___yerO-BPUM_0647___yerO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01149___yerO
# 2: BPUM_0647___yerO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity: 552/954 (57.9%)
# Similarity: 552/954 (57.9%)
# Gaps: 213/954 (22.3%)
# Score: 1431.0
#
#
#=======================================
BSNT_01149___ 1 ATGAATGAAAAAAAAGAGAGAATCATAAAAACCAGCATTCGTTTATTTGC 50
|||||.|||||||||||.|.||||||.|||||.|||||.|..||.|||||
BPUM_0647___y 1 ATGAACGAAAAAAAAGAAAAAATCATTAAAACAAGCATCCAGTTGTTTGC 50
BSNT_01149___ 51 GAAAAAAGGATTCGCAGCTACGACGATCCAAGAAATCGCCAG-TGAATGC 99
||||||.||.||..|..|||||||.||.||.|||||.| ||| |||.|||
BPUM_0647___y 51 GAAAAAGGGTTTTTCTTCTACGACCATTCAGGAAATTG-CAGATGAGTGC 99
BSNT_01149___ 100 GGCATTTCGAAGGGCGCTTTTTATTTGCACTTCAAATCGAAAGAAGCGCT 149
||.||.||.||.|||||.||||||||.||.||||||||.||||| ||.
BPUM_0647___y 100 GGAATATCAAAAGGCGCATTTTATTTACATTTCAAATCAAAAGA---GCA 146
BSNT_01149___ 150 GCTGTT--ATC-TGCCTGTGAATATTATATCGGTATGTCTATGAACAA-- 194
|||.|| ||| .||||.||||||||||||||..|.|||.||| |||
BPUM_0647___y 147 GCTTTTCAATCGCGCCTTTGAATATTATATCGACACGTCCATG--CAAAG 194
BSNT_01149___ 195 -AATGAAA-------AATATAGAAGAAG-ATCTTGCCGGAAAGCCGCCTA 235
|.||||| ||.|.||||..|| ||||.| ||||.|
BPUM_0647___y 195 TATTGAAACGATTCGAAAAGAGAATCAGCATCTCG---------CGCCGA 235
BSNT_01149___ 236 AAGAAGTTTTGAAAAAACAAATTGGCGCT---CAATTTGAGGATTTTCGC 282
.|||..|.||..|.||.||||| |||| ||.|||.||.||||| ||
BPUM_0647___y 236 GAGAGATCTTCCAGAAGCAAAT---CGCTGAACAGTTTCAGCATTTT-GC 281
BSNT_01149___ 283 -GATCATAAAGATTTTATCGTTCTTTTGCTTACCGAAAATATCATTCCGG 331
||..|.||.|||||||||.||.|..|.||.|.|||.||.||.|||||.|
BPUM_0647___y 282 TGAAAACAAGGATTTTATCATTTTGATCCTCAGCGAGAACATTATTCCAG 331
BSNT_01149___ 332 AAAATCAAGAAATCAAGCAATACTTTTACAAAGT-------AACCATGGA 374
||||.||..||||.||..|.|| ||.|.|||.| |||.|..||
BPUM_0647___y 332 AAAACCAGCAAATTAAAAAGTA--TTCAAAAACTGTGAAAAAACAAATGA 379
BSNT_01149___ 375 GACGGATAAGCTGTACCGGAA----CGCCTTG----CTGGTATCCTATGG 416
|.|.|.|| |.|..|| |..|||| || ||||
BPUM_0647___y 380 -ATGAAGAA-----ATCCAAATTTCCATCTTGACCACT-------TATG- 415
BSNT_01149___ 417 CGA-AGGA-ATCGAGCGGTATGTCGCAGATCTGTCCATCATG--GCAAGA 462
|| |||| |||||.|..|||.|..|.||.|||||..||||| .|| |
BPUM_0647___y 416 -GACAGGAGATCGAACCATATATAACTGACCTGTCAGTCATGATTCA--A 462
BSNT_01149___ 463 GGCATTGTGCATTCCTATATGAACGTGATGGTATTTAACGATGAGCTTAA 512
||.||..|.||.||.|||.||.|.|||.||.| |||| .||
BPUM_0647___y 463 GGAATCATCCAATCGTATGTGCAGGTGCTGCT-TTTA----------CAA 501
BSNT_01149___ 513 TATC-GATGCA----------GAAGAAATCTCAGCCTTTATTATTGAGAG 551
.||| |||||| ||.||..||||..|||||||..|.||..|
BPUM_0647___y 502 GATCAGATGCAATTATCATTTGATGAGCTCTCTTCCTTTATACTCGAACG 551
BSNT_01149___ 552 ACTGGATGATCTTGTACAGGGGCTGAGCCGTTCTGCACTCAATCCGATTG 601
..|.||||||.|.||.||.|||.|| ||.|.||| ||.||
BPUM_0647___y 552 GTTTGATGATTTGGTTCAAGGGATG-------CTTCGCTC--TCAGA--- 589
BSNT_01149___ 602 TATCAAAAGACATTTTCAACCC----------------GATGCCTGCGGA 635
|.|||...|||||.||.|| ||||| ||.||
BPUM_0647___y 590 ---CGAAACCTATTTTAAAGCCAACCATTTGGGATGATGATGC--GCCGA 634
BSNT_01149___ 636 AAAAGACCAGCTGCTT--------GAGGACATTCAGAAAGTGAAAGAAAA 677
..|||.||| |||||..||| |...||.||||
BPUM_0647___y 635 -------GTGCTACTTCCCTTCAAGAGGAGCTTC-GTTTGTTAAAG---- 672
BSNT_01149___ 678 C---AGCA--CGCTGCCCGAGGATA-TCACCGTGTCACTTGATGTTATCG 721
| |||| .|||..|.||.|||| || ..||.||..||||.||.||.|
BPUM_0647___y 673 CTTGAGCATTTGCTTTCTGATGATACTC-TTGTATCCATTGAAGTCATTG 721
BSNT_01149___ 722 AGGAAGAATTGACTCAGGATAAACCGCGCAAGCCGATTATTAAAGGCATG 771
|.||||||.||.|..|.|.|.|.||.||.|||||..|.|||.||||.|||
BPUM_0647___y 722 AAGAAGAACTGGCGAAAGCTGAGCCTCGTAAGCCAGTCATTCAAGGGATG 771
BSNT_01149___ 772 CTGTCCAATTTGACCGGAACCAACGACAAAGAAGT-TGAAAGGCTTCGGG 820
|||.|.||||| |.|.|||| ||| ||.
BPUM_0647___y 772 CTGACGAATTT----------------AGAAAAGTGTGA--------GGA 797
BSNT_01149___ 821 CCCTCATCTCTGTCTTTA------TC--TCAATTTGA------------- 849
|||| .|||||.|.| || .||| ||||
BPUM_0647___y 798 CCCT----GCTGTCATAAGAGTAGTCGAACAA-TTGAAGCTGTTTCTTTC 842
BSNT_01149___ 849 ---- 849
BPUM_0647___y 843 ATAA 846
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