Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01149 and BPUM_0647

See Amino acid alignment / Visit BSNT_01149 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:47
# Commandline: needle
#    -asequence dna-align/BSNT_01149___yerO.1.24716.seq
#    -bsequence dna-align/BPUM_0647___yerO.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01149___yerO-BPUM_0647___yerO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01149___yerO-BPUM_0647___yerO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01149___yerO
# 2: BPUM_0647___yerO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity:     552/954 (57.9%)
# Similarity:   552/954 (57.9%)
# Gaps:         213/954 (22.3%)
# Score: 1431.0
# 
#
#=======================================

BSNT_01149___      1 ATGAATGAAAAAAAAGAGAGAATCATAAAAACCAGCATTCGTTTATTTGC     50
                     |||||.|||||||||||.|.||||||.|||||.|||||.|..||.|||||
BPUM_0647___y      1 ATGAACGAAAAAAAAGAAAAAATCATTAAAACAAGCATCCAGTTGTTTGC     50

BSNT_01149___     51 GAAAAAAGGATTCGCAGCTACGACGATCCAAGAAATCGCCAG-TGAATGC     99
                     ||||||.||.||..|..|||||||.||.||.|||||.| ||| |||.|||
BPUM_0647___y     51 GAAAAAGGGTTTTTCTTCTACGACCATTCAGGAAATTG-CAGATGAGTGC     99

BSNT_01149___    100 GGCATTTCGAAGGGCGCTTTTTATTTGCACTTCAAATCGAAAGAAGCGCT    149
                     ||.||.||.||.|||||.||||||||.||.||||||||.|||||   ||.
BPUM_0647___y    100 GGAATATCAAAAGGCGCATTTTATTTACATTTCAAATCAAAAGA---GCA    146

BSNT_01149___    150 GCTGTT--ATC-TGCCTGTGAATATTATATCGGTATGTCTATGAACAA--    194
                     |||.||  ||| .||||.||||||||||||||..|.|||.|||  |||  
BPUM_0647___y    147 GCTTTTCAATCGCGCCTTTGAATATTATATCGACACGTCCATG--CAAAG    194

BSNT_01149___    195 -AATGAAA-------AATATAGAAGAAG-ATCTTGCCGGAAAGCCGCCTA    235
                      |.|||||       ||.|.||||..|| ||||.|         ||||.|
BPUM_0647___y    195 TATTGAAACGATTCGAAAAGAGAATCAGCATCTCG---------CGCCGA    235

BSNT_01149___    236 AAGAAGTTTTGAAAAAACAAATTGGCGCT---CAATTTGAGGATTTTCGC    282
                     .|||..|.||..|.||.|||||   ||||   ||.|||.||.||||| ||
BPUM_0647___y    236 GAGAGATCTTCCAGAAGCAAAT---CGCTGAACAGTTTCAGCATTTT-GC    281

BSNT_01149___    283 -GATCATAAAGATTTTATCGTTCTTTTGCTTACCGAAAATATCATTCCGG    331
                      ||..|.||.|||||||||.||.|..|.||.|.|||.||.||.|||||.|
BPUM_0647___y    282 TGAAAACAAGGATTTTATCATTTTGATCCTCAGCGAGAACATTATTCCAG    331

BSNT_01149___    332 AAAATCAAGAAATCAAGCAATACTTTTACAAAGT-------AACCATGGA    374
                     ||||.||..||||.||..|.||  ||.|.|||.|       |||.|..||
BPUM_0647___y    332 AAAACCAGCAAATTAAAAAGTA--TTCAAAAACTGTGAAAAAACAAATGA    379

BSNT_01149___    375 GACGGATAAGCTGTACCGGAA----CGCCTTG----CTGGTATCCTATGG    416
                      |.|.|.||     |.|..||    |..||||    ||       |||| 
BPUM_0647___y    380 -ATGAAGAA-----ATCCAAATTTCCATCTTGACCACT-------TATG-    415

BSNT_01149___    417 CGA-AGGA-ATCGAGCGGTATGTCGCAGATCTGTCCATCATG--GCAAGA    462
                      || |||| |||||.|..|||.|..|.||.|||||..|||||  .||  |
BPUM_0647___y    416 -GACAGGAGATCGAACCATATATAACTGACCTGTCAGTCATGATTCA--A    462

BSNT_01149___    463 GGCATTGTGCATTCCTATATGAACGTGATGGTATTTAACGATGAGCTTAA    512
                     ||.||..|.||.||.|||.||.|.|||.||.| ||||          .||
BPUM_0647___y    463 GGAATCATCCAATCGTATGTGCAGGTGCTGCT-TTTA----------CAA    501

BSNT_01149___    513 TATC-GATGCA----------GAAGAAATCTCAGCCTTTATTATTGAGAG    551
                     .||| ||||||          ||.||..||||..|||||||..|.||..|
BPUM_0647___y    502 GATCAGATGCAATTATCATTTGATGAGCTCTCTTCCTTTATACTCGAACG    551

BSNT_01149___    552 ACTGGATGATCTTGTACAGGGGCTGAGCCGTTCTGCACTCAATCCGATTG    601
                     ..|.||||||.|.||.||.|||.||       ||.|.|||  ||.||   
BPUM_0647___y    552 GTTTGATGATTTGGTTCAAGGGATG-------CTTCGCTC--TCAGA---    589

BSNT_01149___    602 TATCAAAAGACATTTTCAACCC----------------GATGCCTGCGGA    635
                        |.|||...|||||.||.||                |||||  ||.||
BPUM_0647___y    590 ---CGAAACCTATTTTAAAGCCAACCATTTGGGATGATGATGC--GCCGA    634

BSNT_01149___    636 AAAAGACCAGCTGCTT--------GAGGACATTCAGAAAGTGAAAGAAAA    677
                            ..|||.|||        |||||..||| |...||.||||    
BPUM_0647___y    635 -------GTGCTACTTCCCTTCAAGAGGAGCTTC-GTTTGTTAAAG----    672

BSNT_01149___    678 C---AGCA--CGCTGCCCGAGGATA-TCACCGTGTCACTTGATGTTATCG    721
                     |   ||||  .|||..|.||.|||| || ..||.||..||||.||.||.|
BPUM_0647___y    673 CTTGAGCATTTGCTTTCTGATGATACTC-TTGTATCCATTGAAGTCATTG    721

BSNT_01149___    722 AGGAAGAATTGACTCAGGATAAACCGCGCAAGCCGATTATTAAAGGCATG    771
                     |.||||||.||.|..|.|.|.|.||.||.|||||..|.|||.||||.|||
BPUM_0647___y    722 AAGAAGAACTGGCGAAAGCTGAGCCTCGTAAGCCAGTCATTCAAGGGATG    771

BSNT_01149___    772 CTGTCCAATTTGACCGGAACCAACGACAAAGAAGT-TGAAAGGCTTCGGG    820
                     |||.|.|||||                |.|.|||| |||        ||.
BPUM_0647___y    772 CTGACGAATTT----------------AGAAAAGTGTGA--------GGA    797

BSNT_01149___    821 CCCTCATCTCTGTCTTTA------TC--TCAATTTGA-------------    849
                     ||||    .|||||.|.|      ||  .||| ||||             
BPUM_0647___y    798 CCCT----GCTGTCATAAGAGTAGTCGAACAA-TTGAAGCTGTTTCTTTC    842

BSNT_01149___    849 ----    849
                         
BPUM_0647___y    843 ATAA    846


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