Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02742 and BPUM_0630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:23
# Commandline: needle
# -asequence dna-align/BSNT_02742___pbpX.1.24716.seq
# -bsequence dna-align/BPUM_0630___pbpX.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02742___pbpX-BPUM_0630___pbpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02742___pbpX-BPUM_0630___pbpX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02742___pbpX
# 2: BPUM_0630___pbpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1811
# Identity: 691/1811 (38.2%)
# Similarity: 691/1811 (38.2%)
# Gaps: 904/1811 (49.9%)
# Score: 1194.0
#
#
#=======================================
BSNT_02742___ 1 ATGACAAGCCCAACCCGCAGAAGAACTGCGAAACACAGACGGAGAAAACT 50
BPUM_0630___p 0 -------------------------------------------------- 0
BSNT_02742___ 51 AAATAAAAGAGGAAAA------CTGTT-----GCTTGGTC--TTTTAGCA 87
|.|||||||| .|||| .||| || |||||
BPUM_0630___p 1 ------ATGAGGAAAAATCAGCGTGTTATCTATCTT--TCATTTTTA--- 39
BSNT_02742___ 88 GTGATGGTTTGCA---TTACGATTTGGA-AT---GCTCTTCATCGGAATA 130
||.||| ||| |||| || ||| ||..|.||.|.|
BPUM_0630___p 40 -------TTAGCAATCTTA-----TGGATATCCAGCT-TTGTTGGGGAGA 76
BSNT_02742___ 131 GTGAAGAAAACGAACCATCTCAAGAAACTGCAGCGGTTTC----AAATAC 176
...|.|.|||.|| ||.|.|||| ||| .|
BPUM_0630___p 77 TATATGCAAAAGA------------------AGTGATTTCGCCTAAA-GC 107
BSNT_02742___ 177 C---GATCAGAAAAAAGAGGTCAAAAAGAAAACTGCCAAAAAATCAGAGG 223
| |||| |||.|.| |||||
BPUM_0630___p 108 CATTGATC------AAGTGAT------------------------AGAGG 127
BSNT_02742___ 224 AACAAATCAAAACAGTGGATCGAAATCAAAAAATCAGCAATTATTTAGAA 273
||||.| ||||.| ||.||.
BPUM_0630___p 128 AACAGA---------TGGAGC-----------------------TTGGAC 145
BSNT_02742___ 274 GAAATCGGTTTCAGCGGAACAGCCA---------TGATTGTCAGAAATGG 314
|.|.|| |||.|| |||||||.|.|||.|.
BPUM_0630___p 146 GCATTC-------------CAGGCATGTCCGTTGTGATTGTGAAAAAAGA 182
BSNT_02742___ 315 AGAAAT--CGTAACAAATAAAGGTTTTGGCTATGCTGACCGTAAACACTA 362
.|||.| .|||.||| |||||.|||||.|||||.||.|| |||.|
BPUM_0630___p 183 CGAAGTGGTGTACCAA--AAAGGCTTTGGTTATGCGGATCG-AAAGA--- 226
BSNT_02742___ 363 CATTCAAAATAATCCATTGACA------TCTTTTTATG---TCGGTTCAT 403
||||.||.|.|.||||| .||||.|.|| |.||.||..
BPUM_0630___p 227 -----AAAAGAAGCAAGTGACAGCCAGCACTTTCTTTGAAATTGGATCTA 271
BSNT_02742___ 404 CACAAAAAGCGCTGATTGCAACTGCTATTTTGCAGCTAGAGGAAAAGGGG 453
||...||.|||.|.|..||...|||.|||.||.||.|||||.|..|.||.
BPUM_0630___p 272 CATCCAAGGCGTTTACCGCTCTTGCGATTGTGGAGTTAGAGAAGCAAGGA 321
BSNT_02742___ 454 AAACTTCAGACAAGTGATCCGGTAAGTACGTATTTACC---TCATTTTCC 500
||||||||...||..||||||||.||.|..|||.|.|| |..||||||
BPUM_0630___p 322 AAACTTCATGTAAAAGATCCGGTGAGCAGCTATATTCCAGGTTTTTTTCC 371
BSNT_02742___ 501 TAACGGACAAACGA-------------TTACTTTGAAG-AAT--CTGC-T 533
|||..||||..|| |.||..||.|| ||| .||| |
BPUM_0630___p 372 -AACATACAATGGAAAGCCTCAGCGTCTAACGGTGGAGCAATTAATGCAT 420
BSNT_02742___ 534 TACAC------------------ATACATCGGG------------GATAA 553
.|||| ||.|||.|.| ||||
BPUM_0630___p 421 CACACAAGTGGCATTCCCTTTCAATCCATTGCGCTTATCCAGCCTGATA- 469
BSNT_02742___ 554 ACGGACATATTGAAGGAGACGGCGCCATTACGCCGGACGATTTAATAAAA 603
.|||| |||||..|| ||.| ||||
BPUM_0630___p 470 --TGACA-----AAGGATGCG--------------------TTGA-AAAA 491
BSNT_02742___ 604 GACA-TAG---AACTGCAGGGAA------TCAAACGTCAGCCGGGC---- 639
.||| |.| |||||.|...|| ||||.|||.||||.|||
BPUM_0630___p 492 AACAGTTGATCAACTGAAATCAATCGAGCTCAATCGTAAGCCAGGCAGTT 541
BSNT_02742___ 640 -------GTATGGGACTACCAGGATTCCAACTATTCTGTTCTCGCTTATA 682
.||||.|||.| .|||||||..|||.||.|.|...|
BPUM_0630___p 542 CTTTTGAATATGCGACCA--------TCAACTATGATGTCCTTGGTCTCA 583
BSNT_02742___ 683 TTATTGCTGAAGTAAGCGG---------TGAGCCCTAT------GAACAG 717
||||||...|.||||.||| ||||.|.||| .|||.|
BPUM_0630___p 584 TTATTGAACATGTAACCGGAACATCGTATGAGGCTTATATGAAAAAACTG 633
BSNT_02742___ 718 TACATAAAGAATCATATT-------------------------------- 735
|..|.||.|.|||||.||
BPUM_0630___p 634 TTTAAAAGGCATCATCTTGACCAAACGGAGGCTGGGCCAAAACGGATAAA 683
BSNT_02742___ 736 ----------------------TTTAA------------------GCCTG 745
||||| ||.||
BPUM_0630___p 684 ATCTGGTTCTGTCTCAGAAGGGTTTAAACTACAATTCCTTGCTCCGCATG 733
BSNT_02742___ 746 -----------CGGGAAT---GACGCA-------TGCAGGCTTT------ 768
|..|||| ||.||| .|||||||.|
BPUM_0630___p 734 CTTATGAAGCACCAGAATATCGAGGCAACACCCCGGCAGGCTATATTGTG 783
BSNT_02742___ 769 ----------------------------TACAAAACATATGAA---AAAG 787
|.|| ||||.|| |..|
BPUM_0630___p 784 ATGAATAGTCAGGATGTGGGGACTTGGCTGCA----ATATCAATTGACCG 829
BSNT_02742___ 788 A---ACCTT------------------ATCCTG---------CTGT---- 803
| |.||| |||||| ||||
BPUM_0630___p 830 ATTCAACTTGGTCTCGTTTTGTCATTAATCCTGATCACCTAACTGTGAAT 879
BSNT_02742___ 804 --------------------------------------CGGGTATA-AGA 814
|.|||||| |.|
BPUM_0630___p 880 GTGCCAGAAGAAGGGAAGCATGTCTATTACAATGCCGGCTGGTATATAAA 929
BSNT_02742___ 815 TGAAGGGCGGCAAAACAGTTACAC-CG-----------------TA---- 842
||.|||||..||||||.||.|| || ||
BPUM_0630___p 930 --AAAGGCGGATAAACAGGTAGACTCGCTTTTTCATGCAGGCTCTAACCC 977
BSNT_02742___ 843 ----TATAC----------CTGATCTATCCCA-----------GCTGTAT 867
|||.| ||||||.||||.| ||
BPUM_0630___p 978 AAACTATTCATCATTTTTTCTGATCCATCCAAAAGAAGAGATTGC----- 1022
BSNT_02742___ 868 GGAGCGG-GTG-------ATATTTATATGAGCGCTATAGA---------- 899
||.||| ||| ||||..|||..||...||.|||
BPUM_0630___p 1023 -GATCGGAGTGTTAGCAAATATGAATAGTAGTCATACAGAGCAAACGGCA 1071
BSNT_02742___ 900 -----TAT-----------------GTACAAAT----------------- 910
||| ||||||||
BPUM_0630___p 1072 CGTCTTATTGCAAAAACGATCACAGGTACAAATGAAGAAGTGGAGTCATC 1121
BSNT_02742___ 911 --------------------TTGACCAAGCGCTGA--------------- 925
||||.|| |.|||
BPUM_0630___p 1122 AATGGACCCTTTTCAGCTTATTGATCA---GTTGAGTCTTGGTGCCACAT 1168
BSNT_02742___ 926 -----------TAGACGGAAA-ACTGT-----ATTCG-----------CA 947
|.|..|.||| |.||| .|||| ..
BPUM_0630___p 1169 GTCTTTTCATTTTGCTGCAAATAGTGTCTATCGTTCGTTTTATGAAGTGG 1218
BSNT_02742___ 948 AAAAAGC-TATGAAAA--GATGTTTACG---CCAGGGAGCA--------- 982
||||||| |.|||||| |.||.||.|| .|||||| ||
BPUM_0630___p 1219 AAAAAGCGTGTGAAAAACGGTGCTTTCGTTCGCAGGGA-CATGTCTCTTG 1267
BSNT_02742___ 983 -------GCTCCACA------------TACGGC-----ATGGGATTTTAT 1008
|||..|.| |||.|| ||.||| ||
BPUM_0630___p 1268 GCGTCTGGCTGAAAAGTAGTGGCTGGGTACTGCTGCTAATCGGA----AT 1313
BSNT_02742___ 1009 GTTGATCCCG--------------GAAGCTA---TTCAA------ACCAT 1035
.|||.|||.| |.||||| ||.|| .||.|
BPUM_0630___p 1314 ATTGCTCCTGCCAATGATTGTTGCGCAGCTAGCCTTTAATGGCCTGCCTT 1363
BSNT_02742___ 1036 GG-----------TGTTATGCCGGG--CTTCAATATC---TTGAACAGCT 1069
|| || |||| ||| |||| .|.|| |||||
BPUM_0630___p 1364 GGAAAATGACTTTTG-TATG--GGGACCTTC-CTCTCTCATTGAA----- 1404
BSNT_02742___ 1070 TTAGCAAATCTGGGCAAACCATTGTTATTTTGTTCTCA-----------A 1108
|||||.|.| || ||.||||||..||.||| |
BPUM_0630___p 1405 TTAGCGATT----GC------TTATTATTTGTTTTTCATGTGGTTTTGTA 1444
BSNT_02742___ 1109 ACAT--------TCAA---AATAATGCT-AAAT-------TGGGCCAAGT 1139
..|| |||| |.|.|||.| |.|| ||| .|||.
BPUM_0630___p 1445 CGATTGGTTTCATCAAAGGATTTATGGTGACATCTCCTGCTGG--AAAGA 1492
BSNT_02742___ 1140 GAACAATAAAATAT--------ACCAG----------------CTTCTAA 1165
||..||.||||.|| |.||| |||.|||
BPUM_0630___p 1493 GAGGAAAAAAAGATGACCGTCAAACAGATTTCGGGCATTCATCCTTATAA 1542
BSNT_02742___ 1166 ATCAAGAATGA 1176
BPUM_0630___p 1542 ----------- 1542
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