Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01135 and BPUM_0627
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_01135___yerH.1.24716.seq
# -bsequence dna-align/BPUM_0627___yerH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01135___yerH-BPUM_0627___yerH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01135___yerH-BPUM_0627___yerH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01135___yerH
# 2: BPUM_0627___yerH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1261
# Identity: 851/1261 (67.5%)
# Similarity: 851/1261 (67.5%)
# Gaps: 143/1261 (11.3%)
# Score: 2764.0
#
#
#=======================================
BSNT_01135___ 1 TTGAAAAAGACGTTGGCATTGGCGGCAACGGCGGCAGTATTAATGCTGTC 50
||||||||| ||| |||.||||| |
BPUM_0627___y 1 TTGAAAAAG---------TTG------------------TTATTGCTG-C 22
BSNT_01135___ 51 TGCC--TGCTC-----------GTCAG---------GTTTTGGGGGGGAG 78
||.| ||||| ||||| .|||||||||..||
BPUM_0627___y 23 TGACAATGCTCACACTGGTATTGTCAGCGTGTGCACCTTTTGGGGGAAAG 72
BSNT_01135___ 79 AAGGAGGAAGAGATTACGCAAAAGACGG-CGAAATCGTCAGAAAAAGCGA 127
.|.||.||||||.|.||.|||||.|||| .|||| ||...||||.|||.|
BPUM_0627___y 73 GAAGACGAAGAGGTCACACAAAAAACGGATGAAA-CGAAGGAAACAGCCA 121
BSNT_01135___ 128 TTGTCCCGAAATATAATATCTCTGACTCCTATTACAAAATGGTGCTGCCG 177
|..||||||..||.||||||||.|||||.|||||||||||||||||||||
BPUM_0627___y 122 TCATCCCGATGTACAATATCTCAGACTCTTATTACAAAATGGTGCTGCCG 171
BSNT_01135___ 178 TTTAAGGCAGGCAAAGCGCGCGGCTTAACAACGGAACAGCTGAATACTAG 227
|||||...|||....|||.|.||.||||||.|.||.|..||.||.|| |.
BPUM_0627___y 172 TTTAAACAAGGAGCTGCGAGAGGATTAACAGCAGAGCGTCTCAACAC-AC 220
BSNT_01135___ 228 GC-TGGACATTGACGAGTTTGAAACAGGGCTGATGCGTCTTGCCCAAGAT 276
|| |||||||.||.||.|||||||||||.||.||||||||.||...|||.
BPUM_0627___y 221 GCTTGGACATCGATGAATTTGAAACAGGACTCATGCGTCTCGCAACAGAG 270
BSNT_01135___ 277 TCTTTCTCGACTGACGATTATCTGTTCCAAGAAGGACAATATTTAGATGA 326
||.||....||..||||.||.||.||||||||||||||..||||||||||
BPUM_0627___y 271 TCATTTAATACAAACGACTACCTTTTCCAAGAAGGACAGCATTTAGATGA 320
BSNT_01135___ 327 GGATACAGTATTAAGCTGGCTGGCACGGAAAAAAACGGGCTCTGATTTGA 376
|||.||.||..||.||||||||||.||.||||||||.|||..||||||||
BPUM_0627___y 321 GGACACCGTTCTAGGCTGGCTGGCGCGCAAAAAAACAGGCAGTGATTTGA 370
BSNT_01135___ 377 AAAAAGCCGAAAAAGAAGATAAAAACTTCAAAAATGAAGGCTTGAACCCG 426
||||.||.|||||||.||||||..||||.||.|||..||||||.||.||.
BPUM_0627___y 371 AAAAGGCAGAAAAAGCAGATAAGGACTTTAAGAATTTAGGCTTAAATCCT 420
BSNT_01135___ 427 GCGCTCCCGAGCTCTGGTTCAACAGAAG-AAAAGAACGAAAGCAGCCCGA 475
||.||.||||.|||.||||||||| ||| ..|||||.||||..||.||.|
BPUM_0627___y 421 GCTCTTCCGAACTCAGGTTCAACA-AAGTCTAAGAATGAAAATAGTCCAA 469
BSNT_01135___ 476 TTTATTTAGCATCCATGCTTGAGCATGATTATTTAGTCAGAAAAGATAAG 525
||||.|||||.||.|||.|.||||||.||||.|||.|..||||||||||.
BPUM_0627___y 470 TTTACTTAGCTTCGATGTTAGAGCATAATTACTTAATTCGAAAAGATAAA 519
BSNT_01135___ 526 AA-TTCTATCCAGCTTGGCGGCGTCATGATCGGACTGGCGTTAAACTCCG 574
|| ..|| |.|||||||||||.||..|.||.|||||.|||.|.||.||.|
BPUM_0627___y 520 AACAGCT-TACAGCTTGGCGGGGTTGTCATTGGACTTGCGCTGAATTCTG 568
BSNT_01135___ 575 TGTATTACTATCGTGAAAAAACTGGCGACCCGCAAAAAGAAGTG--GA-- 620
|.|||||.||.||||||||.|.|||.||.||.||..|||||||| ||
BPUM_0627___y 569 TTTATTATTACCGTGAAAATATTGGTGATCCTCAGCAAGAAGTGACGATC 618
BSNT_01135___ 621 GATT-------------AAGGACAGCACGCT-CCGCCAGCAGGGAGAAAA 656
|||| ||.||.| || |.|.||| |.||.|||||
BPUM_0627___y 619 GATTCTTCGAAAAATTCAAAGAAA-----CTACTGTCAG-AAGGCGAAAA 662
BSNT_01135___ 657 AATTGCACAGGAGGTTATTAACCGCCTCCGCAAAAAAGATAACTTGAAGA 706
||||||..|..|.||.||.||.||..|.||..|||..|||...|||.|.|
BPUM_0627___y 663 AATTGCTGAACAAGTGATCAAACGAATTCGTCAAATGGATGGATTGCAAA 712
BSNT_01135___ 707 ATGTGCC------GATTACCGTCGCGCTCTACAAGCAGGCGTCAAAAACA 750
|.||.|| |||| ||.||.||.|||||.||..|||||.||
BPUM_0627___y 713 AAGTACCTGTCATGATT------GCCCTTTATAAGCAAGCACCAAAATCA 756
BSNT_01135___ 751 TCGATTGTGCCGGGGAACTTCATCGCCAAAACAGAGGTCAAAGCAGGCTC 800
|||||.|||||.||.|||||.||.||.||||||||.||.|||||||||||
BPUM_0627___y 757 TCGATCGTGCCAGGAAACTTTATTGCTAAAACAGATGTGAAAGCAGGCTC 806
BSNT_01135___ 801 TACTGATATCTCAAATTGGGATGAC-ATCAATGAAAAATATGTATTCTAT 849
..||||||||...||||||||| || |||||.||..|..||||.||||..
BPUM_0627___y 807 AGCTGATATCGGCAATTGGGAT-ACGATCAAAGAGGAGAATGTCTTCTTC 855
BSNT_01135___ 850 CCGGCAGATA----------CAACCACAGCAGAAAAATACCCGGATGACA 889
||..|||||| ||||.|| ||| |||||..
BPUM_0627___y 856 CCTTCAGATAATGCGAAAGGCAACTAC-------AAA------GATGATT 892
BSNT_01135___ 890 CCGAGGTCTTTAAGCGGTTCAAAAACTCAA---TTGAAGAATATTTCCCG 936
|||||...|||.|.||.||||||| ||| |.|||||.||.||||||
BPUM_0627___y 893 CCGAGCGATTTGACCGCTTCAAAA---CAAAAGTCGAAGACTACTTCCCG 939
BSNT_01135___ 937 AACTATACAGGCGTTGTCGGTACAGCGCTGTATGAAAATGATG---AAAT 983
||.||.||.||.||.||.||.|.|| || |.|.|.||.||.| |..|
BPUM_0627___y 940 AATTACACGGGTGTCGTAGGAAAAG-GC--TTTTACAAAGACGGCAACCT 986
BSNT_01135___ 984 GAAGAAAATGAAGATTGACATACCAATGCAATTCTATGGAAAAAGTGAAG 1033
|.|.||||||||..|.||.||.||||||||.|||||.|||||||..||||
BPUM_0627___y 987 GCAAAAAATGAAAGTCGAAATTCCAATGCAGTTCTACGGAAAAACGGAAG 1036
BSNT_01135___ 1034 TTGTCGCGTTTACCCAGTTCTTAACGGGTGAAGTGATGGACTACTACTCT 1083
|.||.||.||.||.||.|..|||||.||||||||.|||||.||||| |
BPUM_0627___y 1037 TCGTAGCTTTCACGCAATATTTAACAGGTGAAGTAATGGATTACTA---T 1083
BSNT_01135___ 1084 AA-AGGCTCAGTTGATGTCGAAGTCAATATCACGTCCTCAGACGGACAGG 1132
|| ||...|| ||.|||||.|.||.|||||.||.|||||...|||.|
BPUM_0627___y 1084 AAGAGTACCA----ATATCGAAATTAACATCACATCTTCAGATCAACAAG 1129
BSNT_01135___ 1133 AAGCGGTTATTATCCG--CAATGCCGGAGATAAAGAGCCGACTGTTCACA 1180
||||..|.||.| || .|||||.|.|||.|||||.||.||.||.||.|
BPUM_0627___y 1130 AAGCCTTGATCA--CGAAAAATGCTGAAGACAAAGAACCAACCGTCCATA 1177
BSNT_01135___ 1181 TTTATGACTGA 1191
|.|||||||.|
BPUM_0627___y 1178 TATATGACTAA 1188
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