Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01132 and BPUM_0625
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:46
# Commandline: needle
# -asequence dna-align/BSNT_01132___pcrA.1.24716.seq
# -bsequence dna-align/BPUM_0625___pcrA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01132___pcrA-BPUM_0625___pcrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01132___pcrA-BPUM_0625___pcrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01132___pcrA
# 2: BPUM_0625___pcrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2269
# Identity: 1679/2269 (74.0%)
# Similarity: 1679/2269 (74.0%)
# Gaps: 95/2269 ( 4.2%)
# Score: 6035.0
#
#
#=======================================
BSNT_01132___ 1 TTGAATTATATTAGC-AATCA---ATTACTAAGCGGTTTAA--ACCCCGT 44
.|||||.| |.||.| ||||| |||| .||| ||||.|| | ||.
BPUM_0625___p 1 ATGAATGA-AATATCGAATCATCTATTA-GAAG-GGTTGAATGA---CGC 44
BSNT_01132___ 45 TCAGCAGGAAGCAGTCAAAACAACGGACGGGCCTCTTTTGCTGATGGCGG 94
.|||.|.|||||.||||||.||||.|||||.||.||..|..|||||||.|
BPUM_0625___p 45 GCAGAAAGAAGCGGTCAAAGCAACAGACGGTCCGCTACTCTTGATGGCAG 94
BSNT_01132___ 95 GAGCGGGAAGCGGAAAGACGCGTGTCCTGACACACAGAATTGCTTATTTA 144
||||.||||||||||||||.||.||.||.|||||..||||||||||||||
BPUM_0625___p 95 GAGCAGGAAGCGGAAAGACACGGGTGCTCACACATCGAATTGCTTATTTA 144
BSNT_01132___ 145 ATGGCAGAGAAGCATGTGGCGCCGTGGAACATTCTGGCGATCACATTTAC 194
||||||||.|||||||||||.||||||||||||.|.|||||.||.|||||
BPUM_0625___p 145 ATGGCAGAAAAGCATGTGGCTCCGTGGAACATTTTAGCGATTACGTTTAC 194
BSNT_01132___ 195 AAATAAAGCGGCACGCGAAATGAAAGAACGTGTGGAAAGCATCCTTGGAC 244
|||||||||.|||||.||||||...||.|||||..||..|||..|.||.|
BPUM_0625___p 195 AAATAAAGCAGCACGTGAAATGCGTGAGCGTGTACAAGCCATTTTAGGGC 244
BSNT_01132___ 245 CCGGCGCGGACGATATCTGGATTTCCACATTCCACAGCATGTGCGTGCGG 294
|.||.|||||.|||||.|||||.||.||.||||||||||||||.|||||.
BPUM_0625___p 245 CTGGTGCGGATGATATATGGATCTCTACGTTCCACAGCATGTGTGTGCGC 294
BSNT_01132___ 295 ATCTTGCGCAGAGATATCGACCGGATTGGGATCAACCGAAATTTCTCCAT 344
||.||.||..|.|||||.|||||.|||||..|.||.||.||.||.||.||
BPUM_0625___p 295 ATTTTACGACGCGATATTGACCGTATTGGTGTAAATCGCAACTTTTCTAT 344
BSNT_01132___ 345 CCTTGATACGGGTGACCAGCTTTCAGTGATCAAGGGGATTTTGAAGGAGC 394
..|.||.||...|||.|||||||||||.||.||....|||||.||.||.|
BPUM_0625___p 345 ATTAGACACATCTGATCAGCTTTCAGTCATTAAAAACATTTTAAAAGAAC 394
BSNT_01132___ 395 GCAATCTTGATCCGAAGAAGTTTGACCCGAGAAGCATCCTCGGTACGATC 444
|.|||.|.|||||.||.||||||||.||..|.|||||..|.|||.|.|||
BPUM_0625___p 395 GAAATATCGATCCTAAAAAGTTTGATCCACGTAGCATTTTAGGTTCAATC 444
BSNT_01132___ 445 AGCAGTGCGAAAAACGA----ATTGACCGAACCGGAGGAATTCTCTAAAG 490
||.|||||.|||||||| |||||| .|.|||||||.|.|.|||.
BPUM_0625___p 445 AGTAGTGCAAAAAACGAACTCATTGAC----GCAGAGGAATACGCCAAAA 490
BSNT_01132___ 491 TTGCTGGCGGCTACTACGATCAGGTGGTCAGCGATGTATATGCTGATTAT 540
..|||||.|..|.|||.|||||.|||||||||||.||.||..|.||||||
BPUM_0625___p 491 CAGCTGGTGATTTCTATGATCAAGTGGTCAGCGACGTCTACACAGATTAT 540
BSNT_01132___ 541 CAGAA--GAAGCTATTGAAAAACCAGTCGCTCGATTTTGACGATTTGATT 588
||.|| || .||.|.||.|||||.||.||.||||||||.|||.|.|||
BPUM_0625___p 541 CAAAAACGA--TTACTCAAGAACCAATCACTTGATTTTGATGATCTTATT 588
BSNT_01132___ 589 ATGACGACGATTAAACTGTTTGACCGAGTGCCTGAAGTGCTTGAATTTTA 638
||||.|||||||...||||||||.||..|.||||||||..|.|||...||
BPUM_0625___p 589 ATGATGACGATTCGTCTGTTTGAACGCATCCCTGAAGTATTAGAACACTA 638
BSNT_01132___ 639 TCAGCGCAAATTCCAGTACATCCATGTTGATGAGTATCAGGATACGAACA 688
||||||.||||||||.|||||.|||||.|||||||||||||||||.||||
BPUM_0625___p 639 TCAGCGAAAATTCCAATACATTCATGTCGATGAGTATCAGGATACAAACA 688
BSNT_01132___ 689 GGGCGCAATACATGCTCGTTAAGCAGCTTGCCGAGCGTTTCCAGAACCTT 738
|.|||||.||||||||.||.||.|.|||.||..|.|||||.||.||..|.
BPUM_0625___p 689 GAGCGCAGTACATGCTTGTGAAACTGCTCGCTCAACGTTTTCAAAATATA 738
BSNT_01132___ 739 TGCGTTGTCGGGGATTCTGATCAGTCAATCTACAGATGGCGCGGCGCGGA 788
||.||.|||||.||.||.||||||||.|||||..|.||||||||.|||||
BPUM_0625___p 739 TGTGTGGTCGGTGACTCGGATCAGTCCATCTATCGCTGGCGCGGAGCGGA 788
BSNT_01132___ 789 TATCACCAACATCCTTTCATTTGAAAAAGATTATCCG---AATGCAAGCG 835
|||.||.|||||.||.||.|||||||||||||||||| |.||.| |
BPUM_0625___p 789 TATTACAAACATTCTCTCCTTTGAAAAAGATTATCCGTCCAGTGAA---G 835
BSNT_01132___ 836 TGATTTTGCTAGAACAAAACTATCGTTCAACGAAACGGATTTTGCGTGCG 885
||||||||||.||.|||||.|||.|.||.||.|||||.||||||..|||.
BPUM_0625___p 836 TGATTTTGCTTGAGCAAAATTATAGATCGACTAAACGTATTTTGAATGCT 885
BSNT_01132___ 886 GCTAACGAGGTCATCAAAAACAACTCTAACCGCAAACCGAAAAATTTGTG 935
||.|||...||.||..|||||||.||.|||||.||.|||||||||.|.||
BPUM_0625___p 886 GCAAACACAGTGATTCAAAACAATTCAAACCGTAAGCCGAAAAATCTTTG 935
BSNT_01132___ 936 GACGGAAAACGATGAAGGCATAAAAATTTCCTATTATCGCGGTGATAATG 985
|||.|||||.||||||||....||.|||.|||||||.||.|..|||||||
BPUM_0625___p 936 GACAGAAAATGATGAAGGAGCGAAGATTGCCTATTACCGTGCAGATAATG 985
BSNT_01132___ 986 AATTCGGAGAAGGACAGTTTGTGGCCGGTAAAATTCATCAGCTTCACAGC 1035
|||||||.||||||||.|||||.||.||.||.||||||||||||||
BPUM_0625___p 986 AATTCGGTGAAGGACAATTTGTTGCTGGAAAGATTCATCAGCTTCA---- 1031
BSNT_01132___ 1036 TCA----GGCAAGCGGAAGCTGTCTGATATCGCCATATTATACCGGACAA 1081
||| ||||||||.||..|.||.|||.|.||.||..|.||.|||||.|
BPUM_0625___p 1032 TCAGAGCGGCAAGCGTAAATTATCCGATTTTGCGATTCTTTATCGGACCA 1081
BSNT_01132___ 1082 ACGCGCAGTCCCGTGTGATTGAGGAAACGCTT------CTCAAAGCGGGC 1125
|.||.|||||.|||||.||.||||||||| || .||||| |
BPUM_0625___p 1082 ATGCCCAGTCTCGTGTCATAGAGGAAACG-TTATTGAAGTCAAA-----C 1125
BSNT_01132___ 1126 -TTGAACTATAACATTGTCGGCGGCACAAAGTTCTATGACAGAAAAGAAA 1174
||.|| ||.|||||||||||||||||.||||||||||||||||||||.|
BPUM_0625___p 1126 ATTCAA-TACAACATTGTCGGCGGCACGAAGTTCTATGACAGAAAAGAGA 1174
BSNT_01132___ 1175 TTAAAGACATTCTTGCGTACCTGCGCCTCGTATCCAATCCGGATGACGAT 1224
|.||.||||||.|.||||||.|.||.||.|||.|.||.||.||||||||.
BPUM_0625___p 1175 TCAAGGACATTTTGGCGTACTTACGTCTAGTAGCTAACCCAGATGACGAC 1224
BSNT_01132___ 1225 ATCAGTTTCACGCGCATTGTCAATGTGCCGAAGCGCGGAGTCGGCGCGAC 1274
||.||.||..|.||.||.||.||.||.||.|||||||||.||||.||.||
BPUM_0625___p 1225 ATTAGCTTTGCACGAATCGTTAACGTACCAAAGCGCGGAATCGGTGCAAC 1274
BSNT_01132___ 1275 ATCACTTGAAAAAATCGCTTCGTATGCGGCCATAAACGGCTTGTCCTTTT 1324
.||..||||.|||||.||..|.|||||.|..||.||.|...||||..|.|
BPUM_0625___p 1275 TTCTGTTGATAAAATTGCGGCATATGCCGAGATGAATGATCTGTCTATGT 1324
BSNT_01132___ 1325 TCCAAGCGATTCAGCAGGTTGATTTTATCGGCGTCAGTGCCAAAGCGGCA 1374
|..||||..||...|||||.|||||.||.||..|||||||.|..||.||.
BPUM_0625___p 1325 TTGAAGCACTTGCTCAGGTAGATTTCATTGGACTCAGTGCAAGGGCAGCC 1374
BSNT_01132___ 1375 AACGCGCTTGACAGCTTTAGACAGATGATTGA--AAACCTGACCAATATG 1422
||.||||||||....||||.||||.|.||||| ||| |||||||||||
BPUM_0625___p 1375 AATGCGCTTGATGAATTTAAACAGCTCATTGATCAAA--TGACCAATATG 1422
BSNT_01132___ 1423 CAGGATTACTTATCCATTACAGAGCTGACAGAAGAAATTCTTGATAAGAC 1472
||||||||.|||||..|.|||||.||.||||||||||||||.||.||.||
BPUM_0625___p 1423 CAGGATTATTTATCTGTCACAGAACTAACAGAAGAAATTCTAGAGAAAAC 1472
BSNT_01132___ 1473 GGAATACAGAGAAATGCTGAAGGCTGAGAAATCGATCGAAGCCCAAAGCC 1522
.|..||..|.|||...||.||||.|||.|||.||||.|||||.|||||.|
BPUM_0625___p 1473 AGGCTATCGTGAAGCACTAAAGGTTGAAAAAACGATTGAAGCACAAAGTC 1522
BSNT_01132___ 1523 GTTTAGAAAATATCGACGAGTTCCTGTCTGTTACGAAAAACTTTGAACAG 1572
||.||||||||||.||||||||.||.|||||.||.||.|||||||||.|.
BPUM_0625___p 1523 GTCTAGAAAATATTGACGAGTTTCTCTCTGTGACTAAGAACTTTGAAGAA 1572
BSNT_01132___ 1573 AAAAGTGAAGACAAGACACTCGTTGCGTTCCTGACAGA-CTTGGCATTGA 1621
.|||.||||||||||.|.||.||..|.||||||||||| ||||.|.|||
BPUM_0625___p 1573 CAAAATGAAGACAAGTCCCTTGTGACTTTCCTGACAGACCTTGCCCTTG- 1621
BSNT_01132___ 1622 TCGCAGATATTGATCAGCTCGATCAGCAGGAGGAAGA--GTCAGGCGGCA 1669
|||||||.||.|||.||||.|||.|..|.|||||||| .||
BPUM_0625___p 1622 TCGCAGACATCGATAAGCTGGATGAAAATGAGGAAGAAGATC-------- 1663
BSNT_01132___ 1670 AGGATGCGATCACCCTGATGACACTGCACGCCGCGAAAGGACTGGAGTTC 1719
||||||||.|||...|.|||||.||.||||||||.|||||.||.||.|||
BPUM_0625___p 1664 AGGATGCGGTCATTTTAATGACGCTTCACGCCGCAAAAGGTCTAGAATTC 1713
BSNT_01132___ 1720 CCGGTTGTTTTCTTGATGGGGCTTGAAGAAGGCGTCTTCCCGCACAGCCG 1769
||.|||||.|||||.|||||..|.||.|||||.|||||||||||||||||
BPUM_0625___p 1714 CCCGTTGTCTTCTTAATGGGCATGGAGGAAGGTGTCTTCCCGCACAGCCG 1763
BSNT_01132___ 1770 TTCACTCATGGAGGAAGCGGAAATGGAAGAAGAACGCCGCCTTGCGTACG 1819
||||.|.|||||.||.|||||.|||||||||||.|||||||||||.||.|
BPUM_0625___p 1764 TTCATTAATGGAAGATGCGGAGATGGAAGAAGAGCGCCGCCTTGCTTATG 1813
BSNT_01132___ 1820 TTGGGATTACAAGGGCTGAACAGGAGCTTTATCTGACCAA-TGCTAAAAT 1868
|.||.||.|||.|.||.|||.|.||||||||| |.|.||| |||.||.||
BPUM_0625___p 1814 TAGGCATCACACGTGCGGAAGAAGAGCTTTAT-TTATCAAGTGCCAAGAT 1862
BSNT_01132___ 1869 GCGCACCTTGTTTGGCCGGACAAATATGAACCCGGAATCTCGCTTCATTG 1918
|.|.||..|.||.|||||||||||.|||||||..|||||..|.||||||.
BPUM_0625___p 1863 GAGAACACTCTTCGGCCGGACAAACATGAACCTTGAATCAAGATTCATTC 1912
BSNT_01132___ 1919 CTGAAATACCGGATGATTTATTGGAAAACCTAAATGAGAAAAAAGAAACG 1968
..||||||||.|..|||||||||||.|||||||||||||||||||||||.
BPUM_0625___p 1913 GAGAAATACCAGCCGATTTATTGGACAACCTAAATGAGAAAAAAGAAACC 1962
BSNT_01132___ 1969 AGAGCGACGTCTG------CGAGAAAAATGCAGCCGAGACGCGGCCCTGT 2012
|.|.|..|.|.|| |.|||.||...|.||..|||||.||.|||||
BPUM_0625___p 1963 AAAACACCATTTGGCCAAACAAGAGAACGACCGCAAAGACGGGGACCTGT 2012
BSNT_01132___ 2013 TTCACGCCCCGTATCCT-ACGCCA-GCAAA--ACAGGCGGCGACACCTTA 2058
.||||| .|||.|..|| |..||| .|||| |||||||||| .
BPUM_0625___p 2013 CTCACG-TCCGCAAACTCAAACCATTCAAAACACAGGCGGCG-------G 2054
BSNT_01132___ 2059 AA-------CTGGGCAGTCGGAGATAAGGCGGGCCATAAAAAATGGGGAA 2101
|| ||||||.||.||.|||||.||||..||||||||||||||..
BPUM_0625___p 2055 AAGTATTGGCTGGGCTGTGGGCGATAAAGCGGCTCATAAAAAATGGGGCG 2104
BSNT_01132___ 2102 CAGGAACTGTCGTCAGCGTGAAAGGCGAAGGAGAAGGGACGGAGCTCGAT 2151
..|||||.||.|||||.||.||||||...|||||..|.||.|||||.|||
BPUM_0625___p 2105 TTGGAACGGTTGTCAGTGTAAAAGGCAGTGGAGACAGTACAGAGCTTGAT 2154
BSNT_01132___ 2152 ATTGCCTTCCCGAGCCCTGTTGGCGTGAAACGCCTGTTAGCAGCATTTGC 2201
|||||||||||.||||||...|||.|.||.||.||..|.|||||||||||
BPUM_0625___p 2155 ATTGCCTTCCCAAGCCCTACAGGCATTAAGCGTCTTCTCGCAGCATTTGC 2204
BSNT_01132___ 2202 TCCTATTGAAAAGCAGTAA 2220
.||.|||||.|||||.|||
BPUM_0625___p 2205 GCCAATTGAGAAGCAATAA 2223
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