Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01132 and BPUM_0625

See Amino acid alignment / Visit BSNT_01132 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:46
# Commandline: needle
#    -asequence dna-align/BSNT_01132___pcrA.1.24716.seq
#    -bsequence dna-align/BPUM_0625___pcrA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01132___pcrA-BPUM_0625___pcrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01132___pcrA-BPUM_0625___pcrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01132___pcrA
# 2: BPUM_0625___pcrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2269
# Identity:    1679/2269 (74.0%)
# Similarity:  1679/2269 (74.0%)
# Gaps:          95/2269 ( 4.2%)
# Score: 6035.0
# 
#
#=======================================

BSNT_01132___      1 TTGAATTATATTAGC-AATCA---ATTACTAAGCGGTTTAA--ACCCCGT     44
                     .|||||.| |.||.| |||||   |||| .||| ||||.||  |   ||.
BPUM_0625___p      1 ATGAATGA-AATATCGAATCATCTATTA-GAAG-GGTTGAATGA---CGC     44

BSNT_01132___     45 TCAGCAGGAAGCAGTCAAAACAACGGACGGGCCTCTTTTGCTGATGGCGG     94
                     .|||.|.|||||.||||||.||||.|||||.||.||..|..|||||||.|
BPUM_0625___p     45 GCAGAAAGAAGCGGTCAAAGCAACAGACGGTCCGCTACTCTTGATGGCAG     94

BSNT_01132___     95 GAGCGGGAAGCGGAAAGACGCGTGTCCTGACACACAGAATTGCTTATTTA    144
                     ||||.||||||||||||||.||.||.||.|||||..||||||||||||||
BPUM_0625___p     95 GAGCAGGAAGCGGAAAGACACGGGTGCTCACACATCGAATTGCTTATTTA    144

BSNT_01132___    145 ATGGCAGAGAAGCATGTGGCGCCGTGGAACATTCTGGCGATCACATTTAC    194
                     ||||||||.|||||||||||.||||||||||||.|.|||||.||.|||||
BPUM_0625___p    145 ATGGCAGAAAAGCATGTGGCTCCGTGGAACATTTTAGCGATTACGTTTAC    194

BSNT_01132___    195 AAATAAAGCGGCACGCGAAATGAAAGAACGTGTGGAAAGCATCCTTGGAC    244
                     |||||||||.|||||.||||||...||.|||||..||..|||..|.||.|
BPUM_0625___p    195 AAATAAAGCAGCACGTGAAATGCGTGAGCGTGTACAAGCCATTTTAGGGC    244

BSNT_01132___    245 CCGGCGCGGACGATATCTGGATTTCCACATTCCACAGCATGTGCGTGCGG    294
                     |.||.|||||.|||||.|||||.||.||.||||||||||||||.|||||.
BPUM_0625___p    245 CTGGTGCGGATGATATATGGATCTCTACGTTCCACAGCATGTGTGTGCGC    294

BSNT_01132___    295 ATCTTGCGCAGAGATATCGACCGGATTGGGATCAACCGAAATTTCTCCAT    344
                     ||.||.||..|.|||||.|||||.|||||..|.||.||.||.||.||.||
BPUM_0625___p    295 ATTTTACGACGCGATATTGACCGTATTGGTGTAAATCGCAACTTTTCTAT    344

BSNT_01132___    345 CCTTGATACGGGTGACCAGCTTTCAGTGATCAAGGGGATTTTGAAGGAGC    394
                     ..|.||.||...|||.|||||||||||.||.||....|||||.||.||.|
BPUM_0625___p    345 ATTAGACACATCTGATCAGCTTTCAGTCATTAAAAACATTTTAAAAGAAC    394

BSNT_01132___    395 GCAATCTTGATCCGAAGAAGTTTGACCCGAGAAGCATCCTCGGTACGATC    444
                     |.|||.|.|||||.||.||||||||.||..|.|||||..|.|||.|.|||
BPUM_0625___p    395 GAAATATCGATCCTAAAAAGTTTGATCCACGTAGCATTTTAGGTTCAATC    444

BSNT_01132___    445 AGCAGTGCGAAAAACGA----ATTGACCGAACCGGAGGAATTCTCTAAAG    490
                     ||.|||||.||||||||    ||||||    .|.|||||||.|.|.|||.
BPUM_0625___p    445 AGTAGTGCAAAAAACGAACTCATTGAC----GCAGAGGAATACGCCAAAA    490

BSNT_01132___    491 TTGCTGGCGGCTACTACGATCAGGTGGTCAGCGATGTATATGCTGATTAT    540
                     ..|||||.|..|.|||.|||||.|||||||||||.||.||..|.||||||
BPUM_0625___p    491 CAGCTGGTGATTTCTATGATCAAGTGGTCAGCGACGTCTACACAGATTAT    540

BSNT_01132___    541 CAGAA--GAAGCTATTGAAAAACCAGTCGCTCGATTTTGACGATTTGATT    588
                     ||.||  ||  .||.|.||.|||||.||.||.||||||||.|||.|.|||
BPUM_0625___p    541 CAAAAACGA--TTACTCAAGAACCAATCACTTGATTTTGATGATCTTATT    588

BSNT_01132___    589 ATGACGACGATTAAACTGTTTGACCGAGTGCCTGAAGTGCTTGAATTTTA    638
                     ||||.|||||||...||||||||.||..|.||||||||..|.|||...||
BPUM_0625___p    589 ATGATGACGATTCGTCTGTTTGAACGCATCCCTGAAGTATTAGAACACTA    638

BSNT_01132___    639 TCAGCGCAAATTCCAGTACATCCATGTTGATGAGTATCAGGATACGAACA    688
                     ||||||.||||||||.|||||.|||||.|||||||||||||||||.||||
BPUM_0625___p    639 TCAGCGAAAATTCCAATACATTCATGTCGATGAGTATCAGGATACAAACA    688

BSNT_01132___    689 GGGCGCAATACATGCTCGTTAAGCAGCTTGCCGAGCGTTTCCAGAACCTT    738
                     |.|||||.||||||||.||.||.|.|||.||..|.|||||.||.||..|.
BPUM_0625___p    689 GAGCGCAGTACATGCTTGTGAAACTGCTCGCTCAACGTTTTCAAAATATA    738

BSNT_01132___    739 TGCGTTGTCGGGGATTCTGATCAGTCAATCTACAGATGGCGCGGCGCGGA    788
                     ||.||.|||||.||.||.||||||||.|||||..|.||||||||.|||||
BPUM_0625___p    739 TGTGTGGTCGGTGACTCGGATCAGTCCATCTATCGCTGGCGCGGAGCGGA    788

BSNT_01132___    789 TATCACCAACATCCTTTCATTTGAAAAAGATTATCCG---AATGCAAGCG    835
                     |||.||.|||||.||.||.||||||||||||||||||   |.||.|   |
BPUM_0625___p    789 TATTACAAACATTCTCTCCTTTGAAAAAGATTATCCGTCCAGTGAA---G    835

BSNT_01132___    836 TGATTTTGCTAGAACAAAACTATCGTTCAACGAAACGGATTTTGCGTGCG    885
                     ||||||||||.||.|||||.|||.|.||.||.|||||.||||||..|||.
BPUM_0625___p    836 TGATTTTGCTTGAGCAAAATTATAGATCGACTAAACGTATTTTGAATGCT    885

BSNT_01132___    886 GCTAACGAGGTCATCAAAAACAACTCTAACCGCAAACCGAAAAATTTGTG    935
                     ||.|||...||.||..|||||||.||.|||||.||.|||||||||.|.||
BPUM_0625___p    886 GCAAACACAGTGATTCAAAACAATTCAAACCGTAAGCCGAAAAATCTTTG    935

BSNT_01132___    936 GACGGAAAACGATGAAGGCATAAAAATTTCCTATTATCGCGGTGATAATG    985
                     |||.|||||.||||||||....||.|||.|||||||.||.|..|||||||
BPUM_0625___p    936 GACAGAAAATGATGAAGGAGCGAAGATTGCCTATTACCGTGCAGATAATG    985

BSNT_01132___    986 AATTCGGAGAAGGACAGTTTGTGGCCGGTAAAATTCATCAGCTTCACAGC   1035
                     |||||||.||||||||.|||||.||.||.||.||||||||||||||    
BPUM_0625___p    986 AATTCGGTGAAGGACAATTTGTTGCTGGAAAGATTCATCAGCTTCA----   1031

BSNT_01132___   1036 TCA----GGCAAGCGGAAGCTGTCTGATATCGCCATATTATACCGGACAA   1081
                     |||    ||||||||.||..|.||.|||.|.||.||..|.||.|||||.|
BPUM_0625___p   1032 TCAGAGCGGCAAGCGTAAATTATCCGATTTTGCGATTCTTTATCGGACCA   1081

BSNT_01132___   1082 ACGCGCAGTCCCGTGTGATTGAGGAAACGCTT------CTCAAAGCGGGC   1125
                     |.||.|||||.|||||.||.||||||||| ||      .|||||     |
BPUM_0625___p   1082 ATGCCCAGTCTCGTGTCATAGAGGAAACG-TTATTGAAGTCAAA-----C   1125

BSNT_01132___   1126 -TTGAACTATAACATTGTCGGCGGCACAAAGTTCTATGACAGAAAAGAAA   1174
                      ||.|| ||.|||||||||||||||||.||||||||||||||||||||.|
BPUM_0625___p   1126 ATTCAA-TACAACATTGTCGGCGGCACGAAGTTCTATGACAGAAAAGAGA   1174

BSNT_01132___   1175 TTAAAGACATTCTTGCGTACCTGCGCCTCGTATCCAATCCGGATGACGAT   1224
                     |.||.||||||.|.||||||.|.||.||.|||.|.||.||.||||||||.
BPUM_0625___p   1175 TCAAGGACATTTTGGCGTACTTACGTCTAGTAGCTAACCCAGATGACGAC   1224

BSNT_01132___   1225 ATCAGTTTCACGCGCATTGTCAATGTGCCGAAGCGCGGAGTCGGCGCGAC   1274
                     ||.||.||..|.||.||.||.||.||.||.|||||||||.||||.||.||
BPUM_0625___p   1225 ATTAGCTTTGCACGAATCGTTAACGTACCAAAGCGCGGAATCGGTGCAAC   1274

BSNT_01132___   1275 ATCACTTGAAAAAATCGCTTCGTATGCGGCCATAAACGGCTTGTCCTTTT   1324
                     .||..||||.|||||.||..|.|||||.|..||.||.|...||||..|.|
BPUM_0625___p   1275 TTCTGTTGATAAAATTGCGGCATATGCCGAGATGAATGATCTGTCTATGT   1324

BSNT_01132___   1325 TCCAAGCGATTCAGCAGGTTGATTTTATCGGCGTCAGTGCCAAAGCGGCA   1374
                     |..||||..||...|||||.|||||.||.||..|||||||.|..||.||.
BPUM_0625___p   1325 TTGAAGCACTTGCTCAGGTAGATTTCATTGGACTCAGTGCAAGGGCAGCC   1374

BSNT_01132___   1375 AACGCGCTTGACAGCTTTAGACAGATGATTGA--AAACCTGACCAATATG   1422
                     ||.||||||||....||||.||||.|.|||||  |||  |||||||||||
BPUM_0625___p   1375 AATGCGCTTGATGAATTTAAACAGCTCATTGATCAAA--TGACCAATATG   1422

BSNT_01132___   1423 CAGGATTACTTATCCATTACAGAGCTGACAGAAGAAATTCTTGATAAGAC   1472
                     ||||||||.|||||..|.|||||.||.||||||||||||||.||.||.||
BPUM_0625___p   1423 CAGGATTATTTATCTGTCACAGAACTAACAGAAGAAATTCTAGAGAAAAC   1472

BSNT_01132___   1473 GGAATACAGAGAAATGCTGAAGGCTGAGAAATCGATCGAAGCCCAAAGCC   1522
                     .|..||..|.|||...||.||||.|||.|||.||||.|||||.|||||.|
BPUM_0625___p   1473 AGGCTATCGTGAAGCACTAAAGGTTGAAAAAACGATTGAAGCACAAAGTC   1522

BSNT_01132___   1523 GTTTAGAAAATATCGACGAGTTCCTGTCTGTTACGAAAAACTTTGAACAG   1572
                     ||.||||||||||.||||||||.||.|||||.||.||.|||||||||.|.
BPUM_0625___p   1523 GTCTAGAAAATATTGACGAGTTTCTCTCTGTGACTAAGAACTTTGAAGAA   1572

BSNT_01132___   1573 AAAAGTGAAGACAAGACACTCGTTGCGTTCCTGACAGA-CTTGGCATTGA   1621
                     .|||.||||||||||.|.||.||..|.||||||||||| ||||.|.||| 
BPUM_0625___p   1573 CAAAATGAAGACAAGTCCCTTGTGACTTTCCTGACAGACCTTGCCCTTG-   1621

BSNT_01132___   1622 TCGCAGATATTGATCAGCTCGATCAGCAGGAGGAAGA--GTCAGGCGGCA   1669
                     |||||||.||.|||.||||.|||.|..|.||||||||  .||        
BPUM_0625___p   1622 TCGCAGACATCGATAAGCTGGATGAAAATGAGGAAGAAGATC--------   1663

BSNT_01132___   1670 AGGATGCGATCACCCTGATGACACTGCACGCCGCGAAAGGACTGGAGTTC   1719
                     ||||||||.|||...|.|||||.||.||||||||.|||||.||.||.|||
BPUM_0625___p   1664 AGGATGCGGTCATTTTAATGACGCTTCACGCCGCAAAAGGTCTAGAATTC   1713

BSNT_01132___   1720 CCGGTTGTTTTCTTGATGGGGCTTGAAGAAGGCGTCTTCCCGCACAGCCG   1769
                     ||.|||||.|||||.|||||..|.||.|||||.|||||||||||||||||
BPUM_0625___p   1714 CCCGTTGTCTTCTTAATGGGCATGGAGGAAGGTGTCTTCCCGCACAGCCG   1763

BSNT_01132___   1770 TTCACTCATGGAGGAAGCGGAAATGGAAGAAGAACGCCGCCTTGCGTACG   1819
                     ||||.|.|||||.||.|||||.|||||||||||.|||||||||||.||.|
BPUM_0625___p   1764 TTCATTAATGGAAGATGCGGAGATGGAAGAAGAGCGCCGCCTTGCTTATG   1813

BSNT_01132___   1820 TTGGGATTACAAGGGCTGAACAGGAGCTTTATCTGACCAA-TGCTAAAAT   1868
                     |.||.||.|||.|.||.|||.|.||||||||| |.|.||| |||.||.||
BPUM_0625___p   1814 TAGGCATCACACGTGCGGAAGAAGAGCTTTAT-TTATCAAGTGCCAAGAT   1862

BSNT_01132___   1869 GCGCACCTTGTTTGGCCGGACAAATATGAACCCGGAATCTCGCTTCATTG   1918
                     |.|.||..|.||.|||||||||||.|||||||..|||||..|.||||||.
BPUM_0625___p   1863 GAGAACACTCTTCGGCCGGACAAACATGAACCTTGAATCAAGATTCATTC   1912

BSNT_01132___   1919 CTGAAATACCGGATGATTTATTGGAAAACCTAAATGAGAAAAAAGAAACG   1968
                     ..||||||||.|..|||||||||||.|||||||||||||||||||||||.
BPUM_0625___p   1913 GAGAAATACCAGCCGATTTATTGGACAACCTAAATGAGAAAAAAGAAACC   1962

BSNT_01132___   1969 AGAGCGACGTCTG------CGAGAAAAATGCAGCCGAGACGCGGCCCTGT   2012
                     |.|.|..|.|.||      |.|||.||...|.||..|||||.||.|||||
BPUM_0625___p   1963 AAAACACCATTTGGCCAAACAAGAGAACGACCGCAAAGACGGGGACCTGT   2012

BSNT_01132___   2013 TTCACGCCCCGTATCCT-ACGCCA-GCAAA--ACAGGCGGCGACACCTTA   2058
                     .||||| .|||.|..|| |..||| .||||  ||||||||||       .
BPUM_0625___p   2013 CTCACG-TCCGCAAACTCAAACCATTCAAAACACAGGCGGCG-------G   2054

BSNT_01132___   2059 AA-------CTGGGCAGTCGGAGATAAGGCGGGCCATAAAAAATGGGGAA   2101
                     ||       ||||||.||.||.|||||.||||..||||||||||||||..
BPUM_0625___p   2055 AAGTATTGGCTGGGCTGTGGGCGATAAAGCGGCTCATAAAAAATGGGGCG   2104

BSNT_01132___   2102 CAGGAACTGTCGTCAGCGTGAAAGGCGAAGGAGAAGGGACGGAGCTCGAT   2151
                     ..|||||.||.|||||.||.||||||...|||||..|.||.|||||.|||
BPUM_0625___p   2105 TTGGAACGGTTGTCAGTGTAAAAGGCAGTGGAGACAGTACAGAGCTTGAT   2154

BSNT_01132___   2152 ATTGCCTTCCCGAGCCCTGTTGGCGTGAAACGCCTGTTAGCAGCATTTGC   2201
                     |||||||||||.||||||...|||.|.||.||.||..|.|||||||||||
BPUM_0625___p   2155 ATTGCCTTCCCAAGCCCTACAGGCATTAAGCGTCTTCTCGCAGCATTTGC   2204

BSNT_01132___   2202 TCCTATTGAAAAGCAGTAA   2220
                     .||.|||||.|||||.|||
BPUM_0625___p   2205 GCCAATTGAGAAGCAATAA   2223


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.