Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01129 and BPUM_0621
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:45
# Commandline: needle
# -asequence dna-align/BSNT_01129___yerD.1.24716.seq
# -bsequence dna-align/BPUM_0621___yerD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01129___yerD-BPUM_0621___yerD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01129___yerD-BPUM_0621___yerD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01129___yerD
# 2: BPUM_0621___yerD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1663
# Identity: 1112/1663 (66.9%)
# Similarity: 1112/1663 (66.9%)
# Gaps: 167/1663 (10.0%)
# Score: 3423.5
#
#
#=======================================
BSNT_01129___ 1 ATGGAAACCATCATAATAGCAC---TCATCG-CATT-TATCACT----GG 41
.|.|.|.||| ||||.| |||| |..|||| |.
BPUM_0621___y 1 ------------GTGACAACACCTTTCATTGTCATTGTCGCACTATTAGT 38
BSNT_01129___ 42 GATT------ATCGCTATCCCGATCGTCTTGTTTGCCTGGATCTACATAA 85
|||| ||| ||.||.|||.|.||.||...||||||.|..||..
BPUM_0621___y 39 GATTTTTTTCATC---ATACCAATCATTTTATTCATCTGGATTTGGATGC 85
BSNT_01129___ 86 AGGATGAAAAACAGCAGGAGCACTCAATTCTTCGCAACTATCCCGTCATC 135
..||||||||||||.|.|||||.||..|.||.||.||.|||||.|||||.
BPUM_0621___y 86 GAGATGAAAAACAGGAAGAGCATTCTGTCCTACGAAATTATCCGGTCATT 135
BSNT_01129___ 136 GGAAGGTTTCGGTATATCCTTGAAAAAATCGGGCCGGAGCTCAGACAGTA 185
||||.|.|.||||.|||..||||||||||.||.||.|||||..|.||.||
BPUM_0621___y 136 GGAAAGCTACGGTTTATTTTTGAAAAAATAGGACCTGAGCTTCGTCAATA 185
BSNT_01129___ 186 ----TTTATACAGCAATGA-CAATGAGGAGCAGCCTTTTTCACGAAAGGA 230
|||.|| ||||| |.| |||||||..|||||.|||.|||..||
BPUM_0621___y 186 TCTGTTTCTA----AATGATCGA-GAGGAGCTTCCTTTCTCAAGAAGAGA 230
BSNT_01129___ 231 ATATGAGCAAACCGTCATCTCCGGCAAATACAAAAGCAGAATGATGGGCT 280
|||.||||||.|.|||||.||.||.||.|||||||||.|||..|||||||
BPUM_0621___y 231 ATACGAGCAAGCTGTCATGTCTGGGAAGTACAAAAGCCGAACAATGGGCT 280
BSNT_01129___ 281 TTGGATCTGTAAGAGATTTTGATAAACCTGGCTATTATATCCGTAACG-- 328
|||||||...|.|.||||||||.||.||||||||.||.||.||.||||
BPUM_0621___y 281 TTGGATCAAAACGTGATTTTGACAAGCCTGGCTACTACATTCGCAACGTC 330
BSNT_01129___ 329 CTATGTTTCCAAAACAAAGGGAAGAAATGCACGTAAATCAAACGCCAAAA 378
||| |||||||||||..|.||.||..|.|.|.|..|||||.|...||||
BPUM_0621___y 331 CTA--TTTCCAAAACAGCGAGATGAGTTACGCATCGATCAATCTGAAAAA 378
BSNT_01129___ 379 ATTGAAACCCAAATCTATAAAATGGATGCTGACAATCTATTCAAACGCAA 428
||..||||..||.|.|||.|.||.|||...||||||.||.|.|.|.| ||
BPUM_0621___y 379 ATCCAAACAAAAGTGTATCAGATCGATCAAGACAATTTACTGAGAAG-AA 427
BSNT_01129___ 429 G-GAGCATGCCGAACATATCAAGGCAGACCCGTATTTTCTCCATCCTGAT 477
| ||.|||.||.||.|..||.|.|||.|.||.||.|.||||||||..||.
BPUM_0621___y 428 GTGAACATACCAAAGAGGTCGAAGCAAAACCTTACTATCTCCATCAAGAC 477
BSNT_01129___ 478 GATGTACAGGTGATTGGCGAGCATACATGCGAGAAGCCATTTTATGTG-A 526
||||||||.||||||||.|||||.|||||..|.|||||.||...|||| |
BPUM_0621___y 478 GATGTACAAGTGATTGGTGAGCACACATGTCAAAAGCCTTTCCGTGTGAA 527
BSNT_01129___ 527 AGGGCTTAGTCGGCCAGTCCGCCATGAGCTACGGTTCTCTTGGAGAACGG 576
|||.||.| |.||.|||||.||||||||||||||.|||.|.||.||..||
BPUM_0621___y 528 AGGTCTGA-TTGGACAGTCAGCCATGAGCTACGGATCTTTAGGCGACAGG 576
BSNT_01129___ 577 GCTGTTACGGCGCT---CTCA-----AAAGGGCTCCATCAGGCAGGCGGC 618
||..||||.||..| |||| |||| || |||.|||||.
BPUM_0621___y 577 GCCATTACAGCATTATCCTCAGGATTAAAG------AT--GGCTGGCGGT 618
BSNT_01129___ 619 ACCTGGATGAATACAGGTGAAGGAGGATTGTCTGAGTATCACTTAAAGGG 668
||.||||||||.|||||||||||.||..|.|||...||||||.|.||.||
BPUM_0621___y 619 ACGTGGATGAACACAGGTGAAGGCGGGCTTTCTCCCTATCACCTCAAAGG 668
BSNT_01129___ 669 CGGCGCCGATATCATTTGCCAAATCGGACCGGGCCTATTCGGCGTGCGCA 718
|||.|||||||||||.||||||||.||.||.||.|||||.||||||.| |
BPUM_0621___y 669 CGGAGCCGATATCATATGCCAAATTGGGCCCGGTCTATTTGGCGTGAG-A 717
BSNT_01129___ 719 AAAGA-AACGGGGAATTTTCGTGGGAGGAATTTAAAAGAAAAAGC-AGGA 766
|.||| .|.||.|..|||||.|..||.||.|||||.|.||||||| ||.|
BPUM_0621___y 718 ACAGAGGATGGCGCTTTTTCCTTTGAAGAGTTTAAGAAAAAAAGCGAGCA 767
BSNT_01129___ 767 TTGACCAAATTAAAGCGTTTGAGCTAAAGCTGGCACAAGGAGCGAAAACC 816
.||..||.|.|||||.||||||||.||||||||.||||||||.|||||.
BPUM_0621___y 768 -CGAGGAAGTCAAAGCCTTTGAGCTGAAGCTGGCTCAAGGAGCTAAAACA 816
BSNT_01129___ 817 CGCGGCGGCCATGTGGACGGCGCCAAAGTATCAGAGGAAGTGGCAGATAT 866
||||||||.|||.|.|||||.|..||.||..|.||.|||.|.|||.|.||
BPUM_0621___y 817 CGCGGCGGGCATATTGACGGTGAAAAGGTCACCGAAGAAATTGCAAACAT 866
BSNT_01129___ 867 TCGGAA--TGTCGAACCTGGAAAGTCGATTGACAGCCCGAACCGCTTTTA 914
.||.|| ||.||..||...|| ||.|||||||||||.||.||.||
BPUM_0621___y 867 CCGTAAATTGCCGCCCCACCAA--TCCATTGACAGCCCAAATCGATT--- 911
BSNT_01129___ 915 TGA-ATTCTCAAAACC--TCCTGAAATGCTCGACTTTATTGAAAAACTTA 961
||| ||..||.|..|| ||||||.|||.|.||.||.||||||.| .|.
BPUM_0621___y 912 TGAGATGTTCCACTCCATTCCTGATATGTTTGATTTCATTGAACA--GTT 959
BSNT_01129___ 962 GAGATGT-----CGGACAAAAGCCAGTCGGCATCAAACTGGTCGCAGGGC 1006
|.||.|| ||| ||||||.|||||||||||.||.||.|..||.|
BPUM_0621___y 960 GCGAAGTATAGGCGG---AAAGCCTGTCGGCATCAAGCTTGTGGTCGGAC 1006
BSNT_01129___ 1007 ATCCTGAAGA-ATTGCATGAGCTTTTCTCTCATATGCAGAAAAGCGGAAA 1055
||...|||.| |||| |.||.|||....|..|.|||.|.|||||||||||
BPUM_0621___y 1007 ATAAAGAAAACATTG-AGGAACTTGCAGCGTACATGAAAAAAAGCGGAAA 1055
BSNT_01129___ 1056 GCATCCGGATTTTATCAC----GATCGACGGAAGTGAAGGCGGTACCGGA 1101
||||||.|||||.||.|| ||| |.|||| ||||||||.||.||.
BPUM_0621___y 1056 GCATCCTGATTTCATTACAGTGGAT-GGCGGA---GAAGGCGGCACTGGT 1101
BSNT_01129___ 1102 GCTTCCTTTTACGAGCTCGCGGATACAGTCGGCCTTCCGATTATGACAGC 1151
||.||||||.|.||..|.||.|||.|.|..||.||.||||||.|.||.||
BPUM_0621___y 1102 GCGTCCTTTCATGAATTGGCAGATTCCGCAGGGCTGCCGATTTTCACGGC 1151
BSNT_01129___ 1152 GCTGCCTATTGTTGACACGCTTC------TTAAACAGTACGGCTTTCGCA 1195
.||.||.||.||| |.|| |.||..|.||||| |.||..|
BPUM_0621___y 1152 ACTCCCAATGGTT------CATCAAATATTGAAGGAATACGG-TGTCAGA 1194
BSNT_01129___ 1196 G-CCAGCTGAAAATCTTTGCTTCCGGAAAGCTCCTGACCCCTGATAAAAT 1244
| .|||.|.|||.||||||||||.||.||.||.||..|.|||||||||||
BPUM_0621___y 1195 GATCAGGTAAAACTCTTTGCTTCTGGCAAACTTCTCTCACCTGATAAAAT 1244
BSNT_01129___ 1245 CGCGGTTGCCTTAGCCCTCGGCGCTGACTTTGTCAACATCGCACGCGGCA 1294
.|||.|||||.|..||.|.||.||||||||||||||.||.|||||.||..
BPUM_0621___y 1245 TGCGATTGCCCTTTCCATGGGTGCTGACTTTGTCAATATTGCACGGGGAC 1294
BSNT_01129___ 1295 TGATGTTTTCCGTTGGCTGCATCCGCGCTCTCGTCTGCCACACCAACACC 1344
|.||||||||.||.|||||.||.|||||.|..||.||.|||||.||.|..
BPUM_0621___y 1295 TCATGTTTTCAGTCGGCTGTATTCGCGCCCAAGTGTGTCACACGAATAAA 1344
BSNT_01129___ 1345 TGTCCGGCAGGTGTGGCGACGACAGATCCGAAATTGCAAAAAGCGTTGA- 1393
||.||.|..||.||.||.||.||.|||||.||..|.| |||||.|||.|
BPUM_0621___y 1345 TGCCCAGTCGGGGTCGCCACTACTGATCCAAAGCTAC-AAAAGGGTTTAT 1393
BSNT_01129___ 1394 GCGTTGAGGAAAAACAGCATCGTGTCTGCAACTACGTCATTTCCCTGCGC 1443
.|.||||.|||||..|..|.||.||||||||.||..||.||||.||..|.
BPUM_0621___y 1394 CCATTGAAGAAAAGAAATACCGAGTCTGCAATTATATCCTTTCTCTAAGA 1443
BSNT_01129___ 1444 GAGGGGCTGTTTAATCTT----GCAGCCGCAGCAGGGATCAATTCGCCGA 1489
||.||..||||||| ||| |||||| |||||.||..|.||.||.|
BPUM_0621___y 1444 GAAGGTTTGTTTAA-CTTATCCGCAGCC---GCAGGAATTGAATCTCCCA 1489
BSNT_01129___ 1490 TTCACTTTTCCAAGGAG---CATGTTGTCTATCGGA-AAGAGGATGGCAG 1535
||||.||| ||.||| |||.||||||| |.|| ||||..||||
BPUM_0621___y 1490 TTCATTTT---AATGAGAAACATATTGTCTA-CAGACAAGAAAATGG--- 1532
BSNT_01129___ 1536 TATCATCGATATCGACAACCTGA--TCCATCAATTTGTTTCATAA----- 1578
||| ||||| .||| ||| |.|||| |||||..|
BPUM_0621___y 1533 --TCA--------GACAA-GTGAAGTCC--CTATTT-TTTCAGGAACACA 1568
BSNT_01129___ 1578 ------------- 1578
BPUM_0621___y 1569 GCCGTCTGTCTAG 1581
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