Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01124 and BPUM_0617

See Amino acid alignment / Visit BSNT_01124 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:45
# Commandline: needle
#    -asequence dna-align/BSNT_01124___yerA.1.24716.seq
#    -bsequence dna-align/BPUM_0617___yerA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01124___yerA-BPUM_0617___yerA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01124___yerA-BPUM_0617___yerA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01124___yerA
# 2: BPUM_0617___yerA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1795
# Identity:    1276/1795 (71.1%)
# Similarity:  1276/1795 (71.1%)
# Gaps:         104/1795 ( 5.8%)
# Score: 4269.0
# 
#
#=======================================

BSNT_01124___      1 ATGTCCGAACGCACCTTTAACTGGAAAAACAAAGACATCAGGGCACAGGT     50
                     |||||||||||.||.|||||.||||.||||||.||||||.|..||||..|
BPUM_0617___y      1 ATGTCCGAACGTACTTTTAATTGGAGAAACAATGACATCCGCACACAAAT     50

BSNT_01124___     51 TGATGTTGTAGACTCAAAGCTGCTTCCAACGCTCCTTTTACGGAATGCTC    100
                     .|||||.||.||||||||..|..|||||||.|||||||||..|||||..|
BPUM_0617___y     51 CGATGTAGTCGACTCAAAAATAGTTCCAACACTCCTTTTAACGAATGGAC    100

BSNT_01124___    101 TCGTCTTAAATCCATATGTAAAACAATGGCTGAAAAAAAACATTTGGATT    150
                     ||||..||||.||.|.|.|||||||||||.|||||..|||.||||||||.
BPUM_0617___y    101 TCGTGCTAAACCCGTTTTTAAAACAATGGGTGAAAGCAAATATTTGGATA    150

BSNT_01124___    151 TATCAGGACCGCATTGTTTATGT-GGGTCATGAACTTCC---GAATAGAG    196
                     .||.|.||.||.||||||||||| ||..|| ||.|||||   .||||.|.
BPUM_0617___y    151 CATGATGATCGAATTGTTTATGTCGGAGCA-GAGCTTCCTCAAAATAAAT    199

BSNT_01124___    197 CCGAAG--AAATTCATACGATTGATTGTGAAGGAAAATACATTGTGCCAG    244
                     |   ||  |||  |.|..|||||||||||||||.||||||||||||||.|
BPUM_0617___y    200 C---AGCTAAA--CGTGTGATTGATTGTGAAGGGAAATACATTGTGCCTG    244

BSNT_01124___    245 GTTATATTGAACCGCACGCACATCCTTTTCAAATATATAATCCCCAAACA    294
                     |.|||||.||.||.|||||.|||||.||.||.||.||||||||||||.||
BPUM_0617___y    245 GGTATATAGAGCCTCACGCGCATCCGTTCCATATTTATAATCCCCAATCA    294

BSNT_01124___    295 CTGGCGGAATATGTGTCTCAATACGGAACAACGACATTTGTGAATGATAA    344
                     ||.||.||||||||||||||||..||.|||||.||..|.||.|.||||||
BPUM_0617___y    295 CTTGCAGAATATGTGTCTCAATTTGGCACAACCACGATGGTTAGTGATAA    344

BSNT_01124___    345 CTTATTTTTGCTTTTGCAAAGCGGAA--AAAAGAAAGCGCTTACGATTTT    392
                     |||||||.|.||||||||.|||  ||  ||||||||||||||.|.|.|.|
BPUM_0617___y    345 CTTATTTCTTCTTTTGCAGAGC--AATGAAAAGAAAGCGCTTTCCACTCT    392

BSNT_01124___    393 GAATGAACTCAAAAAGCAGCCTGTCCAGTATTTTTGGTGGTCACGCTATG    442
                     |..||||.|.|||.|||||||..|.||||||||.||||||||..|.||.|
BPUM_0617___y    393 GTGTGAATTAAAACAGCAGCCATTTCAGTATTTCTGGTGGTCTAGATACG    442

BSNT_01124___    443 ACCTCCAGACCGAGGT----TCTGAACGAGGACCACG-TCCTTCCATTTG    487
                     |.||.||.|||||.||    |.|||| ||.||    | |.||||| |.|.
BPUM_0617___y    443 ATCTTCAAACCGAAGTCAGATATGAA-GATGA----GATGCTTCC-TATC    486

BSNT_01124___    488 A-----CGTCAGAAAACAGTGGATTGAACATCCGGATGTGATTCAAGGCG    532
                     |     ||..||.||    ||||||||.|||||.|||||..|||||||||
BPUM_0617___y    487 AACTATCGCAAGGAA----TGGATTGATCATCCAGATGTCCTTCAAGGCG    532

BSNT_01124___    533 GAGAAATGACCGGATGGCCTCGCCTGGTAGATGGTGATGATTTAATGCTC    582
                     |.|||.|.||..|.|||||..|..||.|.||.||.||||||.|.||..|.
BPUM_0617___y    533 GCGAATTAACAAGCTGGCCAAGATTGATGGACGGAGATGATCTCATTTTA    582

BSNT_01124___    583 CACTGCATGCAAGCTACAAAGAAACAGCGAAAACGCATTGAAGGGCATTT    632
                     .|.||||||||||..||.|||||.|||||.|||||.||||||||||||||
BPUM_0617___y    583 TATTGCATGCAAGAAACGAAGAAGCAGCGGAAACGAATTGAAGGGCATTT    632

BSNT_01124___    633 TCCCGGCGCATCTGATAAAACGCTTACAAAAATGAAGCTGTTCGGTGCGG    682
                     .||.|||||.|||||.||||||||.|||||||||||||||||.||.||||
BPUM_0617___y    633 CCCTGGCGCTTCTGAGAAAACGCTAACAAAAATGAAGCTGTTTGGCGCGG    682

BSNT_01124___    683 ATTGTGATCATGAAGCGATGACAGGTGATGAAGTGATGAGAAGGC-TGGA    731
                     |..|.||||||||||||||||..|..||.||.|||.|.| ||.|| ||..
BPUM_0617___y    683 ACAGCGATCATGAAGCGATGAATGCAGACGATGTGCTCA-AACGCTTGTC    731

BSNT_01124___    732 ACTGGGCTATTATGTTTCCCTTCGGAACTCTTCCATTCGCCCCGATGTAA    781
                     .||.|||||..||||.||.|||||..|.||||||||.|||||.|||.||.
BPUM_0617___y    732 CCTTGGCTACCATGTCTCACTTCGTCATTCTTCCATCCGCCCAGATTTAG    781

BSNT_01124___    782 GAAAAATCTTGCAAGAGCTGCATGAGAAGGGCTTCCGCTATTATGACCAC    831
                     ..||.||.||...||||.||||||||...|..||..|..|.|||||.|||
BPUM_0617___y    782 TGAACATTTTAAGAGAGTTGCATGAGCGTGATTTTAGACACTATGATCAC    831

BSNT_01124___    832 TTCTTTTACACGACAGATGGCGCAACCCCGAATTTCTATAAAGGCGGCAT    881
                     ||.||.||.||.|||||.||.|||.|.||..||||.|||.|.|..||.||
BPUM_0617___y    832 TTTTTCTATACAACAGACGGAGCAGCGCCTCATTTTTATGAGGAGGGTAT    881

BSNT_01124___    882 GA-CAAACGAGCTGATTCGC-ATTGCGTTAGAAGAAGGCGTACCTGCAAT    929
                     || .||.|| ..||||| || |||||..|.|||||||||||.|||...||
BPUM_0617___y    882 GATTAATCG-TTTGATT-GCAATTGCCCTTGAAGAAGGCGTGCCTATCAT    929

BSNT_01124___    930 CGACGCCTACAATATGGCATCATTTAATATCGCAAAGTATTACCAAATGG    979
                     |||.||.|||||||||||..|.|||||.||.||.||.||.||.|||||.|
BPUM_0617___y    930 CGATGCATACAATATGGCGACCTTTAACATTGCGAAATACTATCAAATTG    979

BSNT_01124___    980 ATGA-TTATTTAGGAGTTGTCGGACCGGGCAGACTGGCATCGCTCAACAT   1028
                     |||| ||| |||||.||||||||.||.||..|.|||||.||..|.||..|
BPUM_0617___y    980 ATGACTTA-TTAGGTGTTGTCGGTCCAGGACGTCTGGCTTCTTTGAATGT   1028

BSNT_01124___   1029 ACTGGAAGCTCCGTTAAATCCGAATCCCGTGACTGTTCTGTCAAAAGGGA   1078
                     ..|.||.|.|||..|.|||||.|||||.|..||.||..|.||.|||||  
BPUM_0617___y   1029 GTTAGATGATCCAATGAATCCAAATCCTGAAACGGTCATATCTAAAGG--   1076

BSNT_01124___   1079 CCATTCTGCGTGAAGACGGCTGTGATTTGAAGGCG--------------T   1114
                       |.||..|.|.||          |||.||.||.|              |
BPUM_0617___y   1077 --AGTCATCCTCAA----------ATTAGATGGAGAGAACCAGCATCAAT   1114

BSNT_01124___   1115 TTACAA-AGACGGACTGGCACAAAGGCGGTCTTGTCTCGCTT-GAACTTT   1162
                     || ||| |.||..|.|||.|.||.|||||.||||| ||..|| ||.||..
BPUM_0617___y   1115 TT-CAAGAAACAAAATGGGAAAATGGCGGGCTTGT-TCCATTAGATCTAG   1162

BSNT_01124___   1163 CATATGATATGACGATGGATGACTTGCAGTTTTCTATGCCGATGGGCGTG   1212
                     ..||||||.||||||.|..|||.|||||.|||||.|||||..|.||.||.
BPUM_0617___y   1163 GCTATGATCTGACGACGAGTGATTTGCAATTTTCCATGCCACTAGGTGTC   1212

BSNT_01124___   1213 AAAATGCGGAATGCGGTTATTATGGAGCCCTATATGATTGAGATTGACAA   1262
                     ||||||.|.|||||.||.||.||||||||.||||...|.||||||||.||
BPUM_0617___y   1213 AAAATGAGAAATGCTGTCATCATGGAGCCGTATACAGTGGAGATTGATAA   1262

BSNT_01124___   1263 TTCGATGGAACAGCTCTCGTTTGACCATGATGAAAGTTATTTGACGATGC   1312
                     .||..||.|.|||||.||.|.|||.||||||.||||||..||.|...||.
BPUM_0617___y   1263 CTCTGTGAATCAGCTGTCATGTGATCATGATCAAAGTTTCTTTAGCCTGA   1312

BSNT_01124___   1313 TCGACAGACACGGGAAATGGCGCGTCAATACGATGATAAAAGGGTTTGCC   1362
                     |.|||.||.|.||..|.|||||.||.||.||||||.|.||||||||||  
BPUM_0617___y   1313 TTGACCGAAAAGGCGAGTGGCGTGTAAACACGATGCTCAAAGGGTTTG--   1360

BSNT_01124___   1363 TCAAGC---GTGCAGGGATTTGTAAGCTCCTTTACGAC-GACGGGCGACA   1408
                      |||.|   |||||.||.|||||.|||||.|||.| || .|||||.||||
BPUM_0617___y   1361 -CAAACAAAGTGCAAGGGTTTGTCAGCTCGTTTTC-ACTCACGGGTGACA   1408

BSNT_01124___   1409 TTGTCGCGATTGGAAAAAATAAAGCGGATATGCTGCTCGCTTTCGCC---   1455
                     ||.|.|.|||.||.||||||||||..||||||.||||.||     .|   
BPUM_0617___y   1409 TTTTAGTGATCGGGAAAAATAAAGAAGATATGATGCTGGC-----ACATA   1453

BSNT_01124___   1456 --CGCATGAAAGAAATCGGAGGAGGAATTGTTTTAGCGGAGAACAGAAAC   1503
                       ||.|||||||||||.||.||.||.||.||..|..|.||||||.|..|.
BPUM_0617___y   1454 AGCGAATGAAAGAAATTGGCGGGGGGATCGTCCTCACAGAGAACGGGGAA   1503

BSNT_01124___   1504 ATTCTGCATGAAATCCCGCTTGC-GCTGTGCGGCTGCGCCTCTTCGGAAG   1552
                     |||.||||.|||||||||| ||| .||.|..|||||.||||||.|.|||.
BPUM_0617___y   1504 ATTTTGCACGAAATCCCGC-TGCAACTATCAGGCTGTGCCTCTGCTGAAC   1552

BSNT_01124___   1553 CGTATGAAGAC-GTGCTTGAGAAGGAACAAAAGCTGAGAGATCTTTTGAC   1601
                     ||| |..|||| ||.|||.||.|...|||||...||.||||.||..|.|.
BPUM_0617___y   1553 CGT-TCGAGACAGTCCTTCAGCAAATACAAACCTTGCGAGAGCTGCTCAT   1601

BSNT_01124___   1602 TGAAAGAGGCTATGAGTTTTGCGAT---CCTATCTATACGCTGCTCTTTT   1648
                     |||.|||||||||...|||   |||   ||.||..||||.||..||||||
BPUM_0617___y   1602 TGAGAGAGGCTATCCATTT---GATTGCCCAATTGATACACTTGTCTTTT   1648

BSNT_01124___   1649 TGCAAAGTACGCACCTTCCGTATATACGCATTACGCCAAGAGGAATCTTC   1698
                     |.||||||||.||..|.||.|||||.||..|.||.|||||||||||.||.
BPUM_0617___y   1649 TCCAAAGTACACATTTGCCATATATTCGAGTGACACCAAGAGGAATATTT   1698

BSNT_01124___   1699 GACGTCATGAAAAAAACTGTACTCTTTCCATCGATAATGCGTTAA   1743
                     ||.||||||||||||||||||||||||||.||.||||||||||||
BPUM_0617___y   1699 GATGTCATGAAAAAAACTGTACTCTTTCCGTCTATAATGCGTTAA   1743


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