Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01124 and BPUM_0617
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:45
# Commandline: needle
# -asequence dna-align/BSNT_01124___yerA.1.24716.seq
# -bsequence dna-align/BPUM_0617___yerA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01124___yerA-BPUM_0617___yerA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01124___yerA-BPUM_0617___yerA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01124___yerA
# 2: BPUM_0617___yerA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1795
# Identity: 1276/1795 (71.1%)
# Similarity: 1276/1795 (71.1%)
# Gaps: 104/1795 ( 5.8%)
# Score: 4269.0
#
#
#=======================================
BSNT_01124___ 1 ATGTCCGAACGCACCTTTAACTGGAAAAACAAAGACATCAGGGCACAGGT 50
|||||||||||.||.|||||.||||.||||||.||||||.|..||||..|
BPUM_0617___y 1 ATGTCCGAACGTACTTTTAATTGGAGAAACAATGACATCCGCACACAAAT 50
BSNT_01124___ 51 TGATGTTGTAGACTCAAAGCTGCTTCCAACGCTCCTTTTACGGAATGCTC 100
.|||||.||.||||||||..|..|||||||.|||||||||..|||||..|
BPUM_0617___y 51 CGATGTAGTCGACTCAAAAATAGTTCCAACACTCCTTTTAACGAATGGAC 100
BSNT_01124___ 101 TCGTCTTAAATCCATATGTAAAACAATGGCTGAAAAAAAACATTTGGATT 150
||||..||||.||.|.|.|||||||||||.|||||..|||.||||||||.
BPUM_0617___y 101 TCGTGCTAAACCCGTTTTTAAAACAATGGGTGAAAGCAAATATTTGGATA 150
BSNT_01124___ 151 TATCAGGACCGCATTGTTTATGT-GGGTCATGAACTTCC---GAATAGAG 196
.||.|.||.||.||||||||||| ||..|| ||.||||| .||||.|.
BPUM_0617___y 151 CATGATGATCGAATTGTTTATGTCGGAGCA-GAGCTTCCTCAAAATAAAT 199
BSNT_01124___ 197 CCGAAG--AAATTCATACGATTGATTGTGAAGGAAAATACATTGTGCCAG 244
| || ||| |.|..|||||||||||||||.||||||||||||||.|
BPUM_0617___y 200 C---AGCTAAA--CGTGTGATTGATTGTGAAGGGAAATACATTGTGCCTG 244
BSNT_01124___ 245 GTTATATTGAACCGCACGCACATCCTTTTCAAATATATAATCCCCAAACA 294
|.|||||.||.||.|||||.|||||.||.||.||.||||||||||||.||
BPUM_0617___y 245 GGTATATAGAGCCTCACGCGCATCCGTTCCATATTTATAATCCCCAATCA 294
BSNT_01124___ 295 CTGGCGGAATATGTGTCTCAATACGGAACAACGACATTTGTGAATGATAA 344
||.||.||||||||||||||||..||.|||||.||..|.||.|.||||||
BPUM_0617___y 295 CTTGCAGAATATGTGTCTCAATTTGGCACAACCACGATGGTTAGTGATAA 344
BSNT_01124___ 345 CTTATTTTTGCTTTTGCAAAGCGGAA--AAAAGAAAGCGCTTACGATTTT 392
|||||||.|.||||||||.||| || ||||||||||||||.|.|.|.|
BPUM_0617___y 345 CTTATTTCTTCTTTTGCAGAGC--AATGAAAAGAAAGCGCTTTCCACTCT 392
BSNT_01124___ 393 GAATGAACTCAAAAAGCAGCCTGTCCAGTATTTTTGGTGGTCACGCTATG 442
|..||||.|.|||.|||||||..|.||||||||.||||||||..|.||.|
BPUM_0617___y 393 GTGTGAATTAAAACAGCAGCCATTTCAGTATTTCTGGTGGTCTAGATACG 442
BSNT_01124___ 443 ACCTCCAGACCGAGGT----TCTGAACGAGGACCACG-TCCTTCCATTTG 487
|.||.||.|||||.|| |.|||| ||.|| | |.||||| |.|.
BPUM_0617___y 443 ATCTTCAAACCGAAGTCAGATATGAA-GATGA----GATGCTTCC-TATC 486
BSNT_01124___ 488 A-----CGTCAGAAAACAGTGGATTGAACATCCGGATGTGATTCAAGGCG 532
| ||..||.|| ||||||||.|||||.|||||..|||||||||
BPUM_0617___y 487 AACTATCGCAAGGAA----TGGATTGATCATCCAGATGTCCTTCAAGGCG 532
BSNT_01124___ 533 GAGAAATGACCGGATGGCCTCGCCTGGTAGATGGTGATGATTTAATGCTC 582
|.|||.|.||..|.|||||..|..||.|.||.||.||||||.|.||..|.
BPUM_0617___y 533 GCGAATTAACAAGCTGGCCAAGATTGATGGACGGAGATGATCTCATTTTA 582
BSNT_01124___ 583 CACTGCATGCAAGCTACAAAGAAACAGCGAAAACGCATTGAAGGGCATTT 632
.|.||||||||||..||.|||||.|||||.|||||.||||||||||||||
BPUM_0617___y 583 TATTGCATGCAAGAAACGAAGAAGCAGCGGAAACGAATTGAAGGGCATTT 632
BSNT_01124___ 633 TCCCGGCGCATCTGATAAAACGCTTACAAAAATGAAGCTGTTCGGTGCGG 682
.||.|||||.|||||.||||||||.|||||||||||||||||.||.||||
BPUM_0617___y 633 CCCTGGCGCTTCTGAGAAAACGCTAACAAAAATGAAGCTGTTTGGCGCGG 682
BSNT_01124___ 683 ATTGTGATCATGAAGCGATGACAGGTGATGAAGTGATGAGAAGGC-TGGA 731
|..|.||||||||||||||||..|..||.||.|||.|.| ||.|| ||..
BPUM_0617___y 683 ACAGCGATCATGAAGCGATGAATGCAGACGATGTGCTCA-AACGCTTGTC 731
BSNT_01124___ 732 ACTGGGCTATTATGTTTCCCTTCGGAACTCTTCCATTCGCCCCGATGTAA 781
.||.|||||..||||.||.|||||..|.||||||||.|||||.|||.||.
BPUM_0617___y 732 CCTTGGCTACCATGTCTCACTTCGTCATTCTTCCATCCGCCCAGATTTAG 781
BSNT_01124___ 782 GAAAAATCTTGCAAGAGCTGCATGAGAAGGGCTTCCGCTATTATGACCAC 831
..||.||.||...||||.||||||||...|..||..|..|.|||||.|||
BPUM_0617___y 782 TGAACATTTTAAGAGAGTTGCATGAGCGTGATTTTAGACACTATGATCAC 831
BSNT_01124___ 832 TTCTTTTACACGACAGATGGCGCAACCCCGAATTTCTATAAAGGCGGCAT 881
||.||.||.||.|||||.||.|||.|.||..||||.|||.|.|..||.||
BPUM_0617___y 832 TTTTTCTATACAACAGACGGAGCAGCGCCTCATTTTTATGAGGAGGGTAT 881
BSNT_01124___ 882 GA-CAAACGAGCTGATTCGC-ATTGCGTTAGAAGAAGGCGTACCTGCAAT 929
|| .||.|| ..||||| || |||||..|.|||||||||||.|||...||
BPUM_0617___y 882 GATTAATCG-TTTGATT-GCAATTGCCCTTGAAGAAGGCGTGCCTATCAT 929
BSNT_01124___ 930 CGACGCCTACAATATGGCATCATTTAATATCGCAAAGTATTACCAAATGG 979
|||.||.|||||||||||..|.|||||.||.||.||.||.||.|||||.|
BPUM_0617___y 930 CGATGCATACAATATGGCGACCTTTAACATTGCGAAATACTATCAAATTG 979
BSNT_01124___ 980 ATGA-TTATTTAGGAGTTGTCGGACCGGGCAGACTGGCATCGCTCAACAT 1028
|||| ||| |||||.||||||||.||.||..|.|||||.||..|.||..|
BPUM_0617___y 980 ATGACTTA-TTAGGTGTTGTCGGTCCAGGACGTCTGGCTTCTTTGAATGT 1028
BSNT_01124___ 1029 ACTGGAAGCTCCGTTAAATCCGAATCCCGTGACTGTTCTGTCAAAAGGGA 1078
..|.||.|.|||..|.|||||.|||||.|..||.||..|.||.|||||
BPUM_0617___y 1029 GTTAGATGATCCAATGAATCCAAATCCTGAAACGGTCATATCTAAAGG-- 1076
BSNT_01124___ 1079 CCATTCTGCGTGAAGACGGCTGTGATTTGAAGGCG--------------T 1114
|.||..|.|.|| |||.||.||.| |
BPUM_0617___y 1077 --AGTCATCCTCAA----------ATTAGATGGAGAGAACCAGCATCAAT 1114
BSNT_01124___ 1115 TTACAA-AGACGGACTGGCACAAAGGCGGTCTTGTCTCGCTT-GAACTTT 1162
|| ||| |.||..|.|||.|.||.|||||.||||| ||..|| ||.||..
BPUM_0617___y 1115 TT-CAAGAAACAAAATGGGAAAATGGCGGGCTTGT-TCCATTAGATCTAG 1162
BSNT_01124___ 1163 CATATGATATGACGATGGATGACTTGCAGTTTTCTATGCCGATGGGCGTG 1212
..||||||.||||||.|..|||.|||||.|||||.|||||..|.||.||.
BPUM_0617___y 1163 GCTATGATCTGACGACGAGTGATTTGCAATTTTCCATGCCACTAGGTGTC 1212
BSNT_01124___ 1213 AAAATGCGGAATGCGGTTATTATGGAGCCCTATATGATTGAGATTGACAA 1262
||||||.|.|||||.||.||.||||||||.||||...|.||||||||.||
BPUM_0617___y 1213 AAAATGAGAAATGCTGTCATCATGGAGCCGTATACAGTGGAGATTGATAA 1262
BSNT_01124___ 1263 TTCGATGGAACAGCTCTCGTTTGACCATGATGAAAGTTATTTGACGATGC 1312
.||..||.|.|||||.||.|.|||.||||||.||||||..||.|...||.
BPUM_0617___y 1263 CTCTGTGAATCAGCTGTCATGTGATCATGATCAAAGTTTCTTTAGCCTGA 1312
BSNT_01124___ 1313 TCGACAGACACGGGAAATGGCGCGTCAATACGATGATAAAAGGGTTTGCC 1362
|.|||.||.|.||..|.|||||.||.||.||||||.|.||||||||||
BPUM_0617___y 1313 TTGACCGAAAAGGCGAGTGGCGTGTAAACACGATGCTCAAAGGGTTTG-- 1360
BSNT_01124___ 1363 TCAAGC---GTGCAGGGATTTGTAAGCTCCTTTACGAC-GACGGGCGACA 1408
|||.| |||||.||.|||||.|||||.|||.| || .|||||.||||
BPUM_0617___y 1361 -CAAACAAAGTGCAAGGGTTTGTCAGCTCGTTTTC-ACTCACGGGTGACA 1408
BSNT_01124___ 1409 TTGTCGCGATTGGAAAAAATAAAGCGGATATGCTGCTCGCTTTCGCC--- 1455
||.|.|.|||.||.||||||||||..||||||.||||.|| .|
BPUM_0617___y 1409 TTTTAGTGATCGGGAAAAATAAAGAAGATATGATGCTGGC-----ACATA 1453
BSNT_01124___ 1456 --CGCATGAAAGAAATCGGAGGAGGAATTGTTTTAGCGGAGAACAGAAAC 1503
||.|||||||||||.||.||.||.||.||..|..|.||||||.|..|.
BPUM_0617___y 1454 AGCGAATGAAAGAAATTGGCGGGGGGATCGTCCTCACAGAGAACGGGGAA 1503
BSNT_01124___ 1504 ATTCTGCATGAAATCCCGCTTGC-GCTGTGCGGCTGCGCCTCTTCGGAAG 1552
|||.||||.|||||||||| ||| .||.|..|||||.||||||.|.|||.
BPUM_0617___y 1504 ATTTTGCACGAAATCCCGC-TGCAACTATCAGGCTGTGCCTCTGCTGAAC 1552
BSNT_01124___ 1553 CGTATGAAGAC-GTGCTTGAGAAGGAACAAAAGCTGAGAGATCTTTTGAC 1601
||| |..|||| ||.|||.||.|...|||||...||.||||.||..|.|.
BPUM_0617___y 1553 CGT-TCGAGACAGTCCTTCAGCAAATACAAACCTTGCGAGAGCTGCTCAT 1601
BSNT_01124___ 1602 TGAAAGAGGCTATGAGTTTTGCGAT---CCTATCTATACGCTGCTCTTTT 1648
|||.|||||||||...||| ||| ||.||..||||.||..||||||
BPUM_0617___y 1602 TGAGAGAGGCTATCCATTT---GATTGCCCAATTGATACACTTGTCTTTT 1648
BSNT_01124___ 1649 TGCAAAGTACGCACCTTCCGTATATACGCATTACGCCAAGAGGAATCTTC 1698
|.||||||||.||..|.||.|||||.||..|.||.|||||||||||.||.
BPUM_0617___y 1649 TCCAAAGTACACATTTGCCATATATTCGAGTGACACCAAGAGGAATATTT 1698
BSNT_01124___ 1699 GACGTCATGAAAAAAACTGTACTCTTTCCATCGATAATGCGTTAA 1743
||.||||||||||||||||||||||||||.||.||||||||||||
BPUM_0617___y 1699 GATGTCATGAAAAAAACTGTACTCTTTCCGTCTATAATGCGTTAA 1743
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