Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03219 and BPUM_0615
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_03219___yodQ.1.24716.seq
# -bsequence dna-align/BPUM_0615___yodQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03219___yodQ-BPUM_0615___yodQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03219___yodQ-BPUM_0615___yodQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03219___yodQ
# 2: BPUM_0615___yodQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1461
# Identity: 829/1461 (56.7%)
# Similarity: 829/1461 (56.7%)
# Gaps: 345/1461 (23.6%)
# Score: 2103.5
#
#
#=======================================
BSNT_03219___ 1 ATGCAAGACATTG-----AAAGAAAAGTAATCGAGTGGCTTGAT----CA 41
||| ||..|.|.|| ||| ||..|||.||| .|
BPUM_0615___y 1 ----------TTGCAGCCAATCACACGT-ATC-AGAAGCTGGATGAGAGA 38
BSNT_03219___ 42 GCATTCGGCCA-----AAGCCATT-CGTCTTCT----CAAAAGGCTCATT 81
||| ||| ||||.||| || ||||| ||||.||..||.|
BPUM_0615___y 39 GCA-----CCAAGATGAAGCGATTGCG-CTTCTTCAGCAAATGGTGCAAT 82
BSNT_03219___ 82 GGGGAAAAAAGCACATTGGGGTCA--GAGTTTAACGCCCAA-----GCTG 124
|.| ||||||| .|| || ||||..||| ||.|
BPUM_0615___y 83 GTG----AAAGCAC-------CCAAGGA----AACGAACAAAAGGTGCAG 117
BSNT_03219___ 125 ----TTGT-GCTTGAA--AAGCTG--CGGCAATTTCATATGGACATTGAT 165
|||| || || |||||| ||.|| ||..|.|.||..|.|||
BPUM_0615___y 118 CAAATTGTAGC---AAATAAGCTGTCCGCCA--TTGGTTTTGATGTAGAT 162
BSNT_03219___ 166 GTATGGGAGCCAAGCATAAAGCAATT-------AAAAC-------AGCAT 201
||||||||| ||| ||.|| |.||.
BPUM_0615___y 163 GTATGGGAG--------------ATTGGCGGAGAAGACCTGCTCGAACAC 198
BSNT_03219___ 202 CCCTACTTTAAATCTAACCGATCCG--ATTTTCATGAGAGCCCGAATATC 249
||.||.||..|.|| .||||..|| .||||.|.|..||.||.|||.||
BPUM_0615___y 199 CCATATTTCTATTC--CCCGAGGCGTTCTTTTAAAGGAAGTCCCAATGTC 246
BSNT_03219___ 250 G--TGGC---TAAA---AAAACGGGAGCCGGCGAAGGTAGGTCCCTGATT 291
| .||| |.|| .|||.|||| ||||.|| ||..|..|.
BPUM_0615___y 247 GCCGGGCGATTGAAGGGGAAAGGGGA--CGGCAAA------TCTATTTTA 288
BSNT_03219___ 292 TTGAACGGCCATATCGATGTTGTGCCTGAAGGAAGCGTAAAGGAT----- 336
||.|||||.||..|||||||||||||.|.|||| |||
BPUM_0615___y 289 TTAAACGGGCACGTCGATGTTGTGCCAGCAGGA---------GATACGAA 329
BSNT_03219___ 337 ----TGGAAGTATGAACCG--------------TATCAAGCTGTCGAAGA 368
||||..||| ||| ||||| .
BPUM_0615___y 330 ACAATGGACATAT---CCGCCCTACAGCGGGCATATCA-----------T 365
BSNT_03219___ 369 AAACGGTAAAATATACGGCCGCGGTTCAACGGATATGAAGGGAGGCAATA 418
||||||.|.|.|.||.||.|||||..||||.||||||||.||.||.|||
BPUM_0615___y 366 AAACGGGAGACTTTATGGACGCGGGGCAACAGATATGAAAGGCGGAAAT- 414
BSNT_03219___ 419 CAGCCCTTCTT-----TTTGCTTTAGAAGCCCTGCACGCCTGCGATGTCA 463
..||||| |||||..||||.||.||||| ||||.| |||
BPUM_0615___y 415 ----GTTTCTTTACTCTTTGCACTAGAGGCGCTGCA----TGCGCT-TCA 455
BSNT_03219___ 464 AA-----CTGAAGGGAGATGTATTGTTTCAGAGTGTTGTAGATGAAGAGT 508
.| |||||.||||||||..|.|||||.|||||.||.||.||||||.
BPUM_0615___y 456 GATTCCGCTGAAAGGAGATGTCGTATTTCATAGTGTCGTCGAAGAAGAGA 505
BSNT_03219___ 509 GCGGCGGCGCCGGTACACTGTCCGCCATCATGAGAGGCTATCGTGCTGAC 558
||||||||||||||||.||..|.|||||..|||||||.|||...||.||.
BPUM_0615___y 506 GCGGCGGCGCCGGTACTCTTGCAGCCATACTGAGAGGATATACAGCAGAT 555
BSNT_03219___ 559 GGGGCACTGATTCCTGAACCGACGAATATGAAACTATTT---ATTAAGCA 605
|.|||..|.|||||.|||||.|...||||||||.|.||| ||| ||
BPUM_0615___y 556 GCGGCGATCATTCCAGAACCAAGTCATATGAAAATCTTTCCGATT---CA 602
BSNT_03219___ 606 GCAGGGTTCGATGTGGTTTCGGATCACTG---------TGAAGGGATTAT 646
||||||.||.|.||||||..| |||| .||||||
BPUM_0615___y 603 GCAGGGATCTAAGTGGTTCAG----ACTGCATATTAAAGGAAGGG----- 643
BSNT_03219___ 647 CCGCACATGGGGGCACACGCTATGAAGGGGTAAGCGCGATTGAAAAAAGC 696
|.||.|||||.||.|||.|.|||.|.||.||...|||.||||||||.||.
BPUM_0615___y 644 CAGCTCATGGCGGAACAAGATATCATGGCGTTTCCGCTATTGAAAAGAGT 693
BSNT_03219___ 697 ATGCACGTTATCAC------AGCGTTAC---AAGAGCTGGAGAAAGTCCG 737
|||..||||.|..| ||||..|| |||| |||| ||
BPUM_0615___y 694 ATGGTCGTTCTTTCGCATGTAGCGGCACTTGAAGA-----AGAA----CG 734
BSNT_03219___ 738 CAATGCGA-GAATTTCAGATCCGCTGTATGACAATATCCCAATACCGGTA 786
.||| |.| |.||..|.||.|||.|.|.|.|..|||||||.||||||.|.
BPUM_0615___y 735 AAAT-CAACGCATCACCGAGCCGTTATTTCAGCATATCCCGATACCGATC 783
BSNT_03219___ 787 CCGGTGAATATCGGCACCATCTC-AGGCGGTGCCTGGCCATCTTCAGTTG 835
||..|.||.||.||.|..|| || ||||||||..|||||.|||||.||.|
BPUM_0615___y 784 CCTATCAACATAGGGAAAAT-TCAAGGCGGTGATTGGCCGTCTTCTGTAG 832
BSNT_03219___ 836 CAGACCGTGTCGTCATA--GAAGGGA-----------GATGC----GGAA 868
|.|| |.|.||||.| |.||||| ||||| |||.
BPUM_0615___y 833 CGGA---TCTAGTCACAATGGAGGGAAGACTTGGTGTGATGCCAGGGGAG 879
BSNT_03219___ 869 TTGCTCCCCATGAGAA--AACAGAAGCTGTAAAACTTGAATTGGAAAACT 916
..|.| ||||.| .|.||||| |||.|.|||||.|
BPUM_0615___y 880 ACGGT-----TGAGCAGGCAGAGAAG-----------GAACTAGAAAATT 913
BSNT_03219___ 917 GGCTGA-AGGATTTAG---AATACCATGACGAATGGTTTAAACGCCATCC 962
||.||| .|||.||.| || |.||.||||||||.|||...|||||
BPUM_0615___y 914 GGATGATGGGACTTGGGGAAA----AGGATGAATGGTTCAAAGAGCATCC 959
BSNT_03219___ 963 CGTACAAGTCGAATGGTTTGGCGCTCAATGGCTGCCGAATGATTTACCTG 1012
.||..||||||||||||||||.|||..||||||.|| |.|.|.||.| |
BPUM_0615___y 960 TGTCGAAGTCGAATGGTTTGGTGCTAGATGGCTTCC--AGGCTCTATC-G 1006
BSNT_03219___ 1013 AT---GATCATC--CTTTAATTTCTGTGCTGCA--------ATCAGCCTA 1049
|| .|.|||| ||||.|..|||.| ||.| ||.||.|..
BPUM_0615___y 1007 ATACGAACCATCCACTTTTAGGTCTAT--TGAAGGAACAATATGAGGCGG 1054
BSNT_03219___ 1050 TCAAAAAATGAAACAGACAGAGCCGATTATTGAGGCTTCCCCGTGGGGAA 1099
|||| |||..||.| .||.|..||.||.||..|.||.|||||||
BPUM_0615___y 1055 TCAA-----GAAGGAGCC---CCCAAAGATCGAAGCGGCTCCTTGGGGAA 1096
BSNT_03219___ 1100 CGGATGGAGGGCTTTTGTACCATGCAGGAGATACACCAGTAATCGTTTTC 1149
|.||.|||||.||..|||..||.||.|.||.||..||..|.|||||.|||
BPUM_0615___y 1097 CAGACGGAGGACTACTGTCACAGGCGGCAGGTATCCCGATCATCGTGTTC 1146
BSNT_03219___ 1150 GGGCCGGGGGAAACAAAAACG---GCTCATCAGGCCAATGAATACATTGA 1196
||.||.|| |||||.|..| ||.|||....|.|||||||.|||.||
BPUM_0615___y 1147 GGACCTGG---AACAACAGAGCTTGCCCATTTTCCGAATGAATCCATCGA 1193
BSNT_03219___ 1197 GGTTGAAGCCATG--ATAGAATCTGCTAAAATTATTGCACTTTTTGTCAT 1244
..|||| .|||| ||.|||.|.||..|||||||||||..|....|..|
BPUM_0615___y 1194 CATTGA--GCATGTCATTGAAGCCGCAGAAATTATTGCAGGTACGATGGT 1241
BSNT_03219___ 1245 GGATTGGTGCGGGCTTCATACAGATGGGGAGGATGCGGATGCTCAAGTCA 1294
|||.||||| .||.|..|.|||.|||| |||.|
BPUM_0615___y 1242 GGAATGGTG------------TGAAGCAGCGGAAGCGG-------AGTGA 1272
BSNT_03219___ 1295 ATAAAGAGTAG 1305
BPUM_0615___y 1272 ----------- 1272
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