Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03220 and BPUM_0614
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_03220___yodR.1.24716.seq
# -bsequence dna-align/BPUM_0614___yodR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03220___yodR-BPUM_0614___yodR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03220___yodR-BPUM_0614___yodR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03220___yodR
# 2: BPUM_0614___yodR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 750
# Identity: 433/750 (57.7%)
# Similarity: 433/750 (57.7%)
# Gaps: 180/750 (24.0%)
# Score: 1191.5
#
#
#=======================================
BSNT_03220___ 1 ATGGGCTTGGGAGTAGCA--GA---AAGAGAACAGATTGCAAAACGCGCT 45
||||||.|||||| .|| || ||||.|.|..||.||.|||||.||.
BPUM_0614___y 1 ATGGGCATGGGAG--ACATCGATTTAAGACACCGCATAGCCAAACGTGCG 48
BSNT_03220___ 46 GCTACTGAAATT-AAGCAGGGCATGATTGTGAATCTCGGTATCGGTATCC 94
||....|||||| ||| |.||||||||.||.|||||.||.||.||||||
BPUM_0614___y 49 GCGCAGGAAATTGAAG-ATGGCATGATCGTCAATCTTGGGATTGGTATC- 96
BSNT_03220___ 95 CATCCTTGGTACCGA-ACTTTTTGAAGCCTG----ACA-TGCAGGTCAT- 137
|||| || |||.||| | ||| |.|||..|||
BPUM_0614___y 97 -----------CCGACAC---TTGCAGC--GGAATACATTCCAGCGCATT 130
BSNT_03220___ 138 ----------GTTTCAAGCGGAAAACGGTGTCCTTGGCATTGGAGAAAG- 176
|.||||.||.|||||||| |.|| ||.||.|.|.|
BPUM_0614___y 131 ACAACGTATGGCTTCATGCTGAAAACGG---CATT---ATGGGGGCAGGC 174
BSNT_03220___ 177 -----TCCCGAAAAGGGAGAAGAGGATGCGCATTTATGCAACGCCGCGGG 221
.||.|.|.|.||||||||.|||.|..||||.||||||||||..||
BPUM_0614___y 175 GCCTCACCAGTACAAGGAGAAGAAGATCCAAATTTGTGCAACGCCGGCGG 224
BSNT_03220___ 222 ATATCCTGTCCGCGCTGT--------AAAAGG-GGCGTCTTATTTTGATA 262
.||||||.| | |||||| ||| ||.||..|.||.|
BPUM_0614___y 225 CTATCCTAT--------TACATTAACAAAAGGCGGC-TCATACATGGACA 265
BSNT_03220___ 263 CAACCA-TGTCTTTTGCAATGATCAGAAAAGGCAAAATTGACATTACGAT 311
..||.| || ||||||..||.||..|||||||||...|.||.||.||.||
BPUM_0614___y 266 GCACGACTG-CTTTTGGCATTATTCGAAAAGGCATGCTGGATATGACCAT 314
BSNT_03220___ 312 TTTAGGCGCCCTGCAGGTGAGCCAATCA-GGAGATTTGGCAAATTGGCTT 360
||||||.||.||..|.||.|| ||.||| ||.|||.|.||.||||||.||
BPUM_0614___y 315 TTTAGGTGCACTTGAAGTAAG-CAGTCAGGGCGATCTTGCGAATTGGATT 363
BSNT_03220___ 361 GTTCCGGGAAAAAAGGTGCCTGGTATGGGCGGGGCGATGGAGCTTGCCCA 410
||.||.||.|||...||.||.||.||||||||.|||||.||||||||.||
BPUM_0614___y 364 GTGCCAGGTAAACGAGTACCCGGGATGGGCGGAGCGATTGAGCTTGCACA 413
BSNT_03220___ 411 AAAAGCGAAAAAAGTGGTTGTCGTCATGAGTCA--------------TAC 446
|||.||||||||.||.||.||.||.|||||.|| .||
BPUM_0614___y 414 AAAGGCGAAAAAGGTTGTGGTGGTGATGAGCCACCTCGATAAACACGGAC 463
BSNT_03220___ 447 AGATCAAAAGGGAA---GGCCTAAATTAACAGAAAGATGTACGCTGCCAT 493
| ||||||.|.||| .||| ||.||..||||.|
BPUM_0614___y 464 A-ATCAAAGGTGAAATCTGCC----------------TGCACATTGCCCT 496
BSNT_03220___ 494 TAACTGCTGCAGGC-TGTGTAGATTTGATTATTACCGAAAAAGCGGTTCT 542
||||.|| |.||.| ||||||||||||||||||||.||.|..||.||..|
BPUM_0614___y 497 TAACGGC-GAAGTCTTGTGTAGATTTGATTATTACGGATATGGCCGTCAT 545
BSNT_03220___ 543 TGAGGTCGATAGCCATCAC-----TTCATTTTAAAAGAGCTGATGAATGG 587
|||||||.| ||||| .||||||||...||..|.|||
BPUM_0614___y 546 TGAGGTCAA-----ATCACAGCTGCTCATTTTACGTGAAGTCATG----- 585
BSNT_03220___ 588 CTCGACAAT-------CGATGAGGTGACGAGGCTGACAGAAG----CTGA 626
|.||..| .||.||.||.|..|||..||||||.| ||.|
BPUM_0614___y 586 --CCACCGTTTCAGCCGGAGGATGTCATAAGGGCGACAGAGGCACCCTTA 633
BSNT_03220___ 627 AATCAAAATAGATATGCCTTTT---------TCTTAA------------- 654
| |||| |.||||
BPUM_0614___y 634 A-----------------TTTTAGCGCCTGATGTTAAATCTGTTGTGTAG 666
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