Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03221 and BPUM_0613
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_03221___yodS.1.24716.seq
# -bsequence dna-align/BPUM_0613___atoD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03221___yodS-BPUM_0613___atoD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03221___yodS-BPUM_0613___atoD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03221___yodS
# 2: BPUM_0613___atoD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 763
# Identity: 453/763 (59.4%)
# Similarity: 453/763 (59.4%)
# Gaps: 149/763 (19.5%)
# Score: 1218.0
#
#
#=======================================
BSNT_03221___ 1 ATGGCGCCATTTCAAAAAGCAATCAGCATTGACACAGCAATTGCAGATG- 49
||.|.|| |.||||.||.||.|||||
BPUM_0613___a 1 ---------------------ATGAACA---AAACAGTAAATGTAGATGA 26
BSNT_03221___ 50 --------------TTCGGGATG----GATCGGTTCTGATGTTTGGCGGT 81
||.||.||| ||.| .|.|||||||||||.
BPUM_0613___a 27 AGTGATCACGCATTTTAGGAATGACATGACC----ATCATGTTTGGCGGG 72
BSNT_03221___ 82 TTTGGGGGAGTCGGGTCGCCTCCTTCATTGATTGAAGCGATATTGGACAG 131
|||||.||.||.||.|||||.||.||||||||.||.||.||..|.|| ||
BPUM_0613___a 73 TTTGGCGGCGTAGGATCGCCGCCATCATTGATCGATGCCATTCTAGA-AG 121
BSNT_03221___ 132 -CGGTATAACGGATTTAACTGTGATTTGCAATGACGCCGGTTTCCCGGAT 180
|..|||.|..|||.|.||..|.||..|.||.||.||.|||||.|||.|.
BPUM_0613___a 122 CCAATATTAAAGATCTGACATTAATCGGAAACGATGCAGGTTTTCCGCAA 171
BSNT_03221___ 181 ATAGGGATCGGCCCGCTTATTGTTAATCA-------ACGGGTCAA-AACC 222
|||||..|.||.|..| |.|||| |.|.||||| ||
BPUM_0613___a 172 ATAGGTGTTGGACGAC-------TGATCACAGAAGGAAGAGTCAAGAA-- 212
BSNT_03221___ 223 CTGATC---GCCTCGCATATAGGTTCCAATCCTGTAGCCGGAAAACAGAT 269
|||| ||.||.|||||.||.||.|||||..||||||||.|..|.||
BPUM_0613___a 213 --GATCATTGCTTCTCATATTGGCTCAAATCCAATAGCCGGACAGAAAAT 260
BSNT_03221___ 270 GACAGAG--GGGACGTTAGAGGTTCAATTTTCACCTCAGGGAACGCTTGC 317
| ||| | ||.||..||||.|||||.||||..||.|||||.|..|||||
BPUM_0613___a 261 G-CAG-GCAGGTACACTAGACGTTCATTTTTACCCGCAGGGCATTCTTGC 308
BSNT_03221___ 318 GGAACGGATTCGCGCTGGCGGAGCGGGACTTGGC-GGTATTTTAACCGAT 366
.|||...||.||.||.||||| |..||..||||| ||.|||.|.||.|||
BPUM_0613___a 309 AGAAAAAATACGAGCAGGCGG-GATGGGTTTGGCAGGCATTGTGACAGAT 357
BSNT_03221___ 367 GTGGGCATTGATAATC-CAATGGTTTGCGAAAAAAAGGACATCGT----- 410
||.|||||.||||..| ||| |..|||.||.|||.|..||||
BPUM_0613___a 358 GTCGGCATGGATAGCCTCAA----TCTCGATAAGAAGCAGCTCGTGCCGC 403
BSNT_03221___ 411 --AACAGTGGCGGGAAA-ACGATA----CTTGATTGAAGAG---GCGCTG 450
||| ||||| || ||| ||| ||| |||||.
BPUM_0613___a 404 TAAAC-------GGAAAGAC-ATATATCCTT-------GAGCCTGCGCTA 438
BSNT_03221___ 451 ACGGCTGATTTTGCTTTTATCAATGCTTACATTGCAGATGAATTCGGCAA 500
||.||.|||.|.||..||.|.|||||...||..|||||||||...||.||
BPUM_0613___a 439 ACAGCGGATATGGCCATTGTGAATGCCCTCAAAGCAGATGAAGCAGGAAA 488
BSNT_03221___ 501 TCTAACGTATGACAAAACCGCGCGCAATATGAATCCGCTTATGGCAATGG 550
|||||..|.|||.||||..||.||.||||..||.|||.||.||||.||||
BPUM_0613___a 489 TCTAATATTTGATAAAAGTGCTCGGAATACAAACCCGATTGTGGCGATGG 538
BSNT_03221___ 551 CCGCCAGGAGA----ACCTTTGCCGAAGCTG--AGCGTATCGTTCCGATG 594
||||||| |||.||||.|||| || ||.| ||.||.||..||
BPUM_0613___a 539 ----CAGGAGACTGGACCATTGCGGAAG-TGGAAGAG-ATTGTGCCAGTG 582
BSNT_03221___ 595 GGGGAGATTTCT-------GAAGAAATGATTGTCACACCGGGGGTTTTTG 637
||..| ||| ||.||| ||.||.|||||.||.||.||||
BPUM_0613___a 583 GGTCA----TCTTCATCCAGAGGAA---ATCGTGACACCAGGCGTATTTG 625
BSNT_03221___ 638 TTAAGGGGGTTGTACGAAGC-GAGGGAGTGAAGTGGAAATGGGCTTGGGA 686
|.||...|.|.||.| ||.| .|.||||||||.||||.||||||.|||||
BPUM_0613___a 626 TGAACCAGATCGTGC-AATCAAAAGGAGTGAACTGGACATGGGCATGGGA 674
BSNT_03221___ 687 G---TAG------ 690
| |.|
BPUM_0613___a 675 GACATCGATTTAA 687
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