Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03222 and BPUM_0612
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_03222___yodT.1.24716.seq
# -bsequence dna-align/BPUM_0612___yodT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03222___yodT-BPUM_0612___yodT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03222___yodT-BPUM_0612___yodT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03222___yodT
# 2: BPUM_0612___yodT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1525
# Identity: 886/1525 (58.1%)
# Similarity: 886/1525 (58.1%)
# Gaps: 350/1525 (23.0%)
# Score: 2181.0
#
#
#=======================================
BSNT_03222___ 1 ATGAGCAG--------TTATTTGATTAAGCCAGAGCTTAGCTCGGC-CTA 41
|.|.|| |||.||.||.||.|| ||..||...||.|| .||
BPUM_0612___y 1 --GTGGAGACCCGGGATTACTTAATCAAACC-GATGTTGAATCAGCATTA 47
BSNT_03222___ 42 TCCGGTTGTCAGTTATGCGA-AGGG--TTCATATGTTTATGATCAGACCG 88
|||.| ||.|.||.|...|| |||| || |||.|.|||||||.|..||
BPUM_0612___y 48 TCCTG-TGGCTGTGAAAGGAGAGGGAATT--TATTTATATGATCGGGACG 94
BSNT_03222___ 89 GAAAAAAATATCTCGACGGCTCGTCAGGTGCGGTGACATGTAA-TATCGG 137
|||||||||||.|.||.|||||.||.||.||.||.|| .|.|| |||.||
BPUM_0612___y 95 GAAAAAAATATATAGATGGCTCATCGGGGGCTGTCAC-GGCAAGTATTGG 143
BSNT_03222___ 138 CCACGGAGTTCG---------TGATG---TGACTGAG-AAGCTGAAAGAA 174
.||.||..|.|| ||||| ||||.||| ||||.||||
BPUM_0612___y 144 ACATGGCATACGTGAAATCATTGATGCCATGACCGAGCAAGCGGAAA--- 190
BSNT_03222___ 175 CAGCTTGATCAGGTGTCTTTTGCTTACCGCTCACAGTTTACGAGTGAGCC 224
|.|||...|||.|.|||.|.|||||.||.||.|.|||.||
BPUM_0612___y 191 ----------AAGTGAGCTTTACGTACAGATCACAATTCACAAATGAACC 230
BSNT_03222___ 225 CGCCGA-------GC-----AATT-AGC-CGCTCTCTTGGCACAGGAGCT 260
.||.|| || |||| ||| .||| |||.| |||| |
BPUM_0612___y 231 AGCAGAAGATCTTGCTTATGAATTGAGCAAGCT---TTGTC-CAGG---T 273
BSNT_03222___ 261 GCCCGGAGATGTGAATTGGTCTTTTTTTGTCAACAGCGGGTCAGAAGCGA 310
..|| ||||.|||||||||||||||...||.||.|||||.||.|
BPUM_0612___y 274 AACC-------TGAACTGGTCTTTTTTTGTCGGAAGTGGATCAGAGGCAA 316
BSNT_03222___ 311 TAGAAACAGCTATGAAAATCGCCATTCAGTATTGGCA-------GGAAA- 352
..||||||||.||||||||.||.||||||.||||||| |||||
BPUM_0612___y 317 CGGAAACAGCCATGAAAATTGCTATTCAGCATTGGCAGGAGCAGGGAAAG 366
BSNT_03222___ 353 ----AAAAGCAAACACAAAAATCCATCTTTTTGTCTCGATGGAGCAGTTA 398
|.||| ||.|||| ||.|.||||||||||..|||||
BPUM_0612___y 367 GCGGAGAAG-AATCACA-----------TTATTTCTCGATGGATGAGTTA 404
BSNT_03222___ 399 CCACGGAATAACTTTGGGAGCGCTTTCATTGTCTGGTTTTTATGAAAGGA 448
.|||||.||.||..|.||.|||||.||..||||.||...|..||.|||||
BPUM_0612___y 405 TCACGGCATCACCCTCGGTGCGCTGTCGATGTCCGGACATATTGCAAGGA 454
BSNT_03222___ 449 GATACCG-GTTCACCCAT--CTCATTGAGCGGTATCC--AGCTATCTCAG 493
||.|.|| .||.|.|||| ||| ||...|.|||| .|||.||||
BPUM_0612___y 455 GAGAGCGCTTTGAACCATTGCTC---GAAAAGAATCCGGTGCTGTCTC-- 499
BSNT_03222___ 494 CTCCACATATTTATCG---------GCTGAATTATGAGACGG-AAGAAGA 533
|.|||.|||..||||| ||.|||..| |||.|| |||.||
BPUM_0612___y 500 CGCCATATAGCTATCGTTCATGGCTGCCGAAGGA--AGAGGGCAAGCAG- 546
BSNT_03222___ 534 CTTTGTTCAGACTG-------CAGCTGATGAACTGGACAC---------- 566
||| ||.|| ||| |||.|..|.||
BPUM_0612___y 547 ----GTT--GAATGGTATGTCCAG-----GAATTTAAAACGGTCATTCAG 585
BSNT_03222___ 567 --TATGATCAAAAGAATCGGAAGCCAATTCATCGCCGGCTTTGTGGCTGA 614
||| |..|||||| ||.| |||||||..|||.|.||.||
BPUM_0612___y 586 CGTAT-AGGAAAAGA----GAGG-------ATCGCCGCTTTTATTGCAGA 623
BSNT_03222___ 615 GCCTATTATTGGTGCTGCAGGAGCAGCG--ATTACTCCGCCTCCGGGATA 662
|||.|||.|.||.||..|.|||||.||| |.|| |||||....|||||
BPUM_0612___y 624 GCCGATTGTCGGGGCATCGGGAGCGGCGCTAGTA--CCGCCAGACGGATA 671
BSNT_03222___ 663 TTATGAGAG--ATTAA--------GTGAGGTATGCCGCACACACGATGTG 702
||.||| || ||.|| |||||| .|.|||||.|
BPUM_0612___y 672 TTTTGA-AGCAATGAAGCGTGTCTGTGAGG---------AAAACGATAT- 710
BSNT_03222___ 703 CTTT--TTATTGCAGATGAAGTGATGACGGGGCTTGGGA-GAACAGGAAG 749
||| |.||||||||.|||||.||||| .|||||.||| ||||.||.|.
BPUM_0612___y 711 -TTTAATGATTGCAGACGAAGTCATGAC-AGGCTTTGGACGAACTGGGAA 758
BSNT_03222___ 750 GATGCTCGCGACAGAGCATTGGGACACCGTACCTGATATTGCTGTACT-G 798
.|||.|.||||..||||||||||.|..||||||.||||||...||.|| |
BPUM_0612___y 759 AATGTTTGCGATGGAGCATTGGGGCGTCGTACCAGATATTATGGTTCTCG 808
BSNT_03222___ 799 GGGAAGGGACTCGGTGCGGGGTATGCACCTATTGCCGCTGCCGTCGTATC 848
|..|||||| |..||||.||.|||.||||.|||||.||.||||||..|.|
BPUM_0612___y 809 GCAAAGGGA-TGAGTGCTGGCTATTCACCGATTGCGGCAGCCGTCTCAGC 857
BSNT_03222___ 849 TGATTCTATTATTGAAACGATAAAACAA--------GGGTCAGG---TGT 887
.|||..|.|.||.| || .||| ||.||.|| .||
BPUM_0612___y 858 GGATCATGTCATCG---CG-----CCAATTCTGAGCGGTTCCGGCTCAGT 899
BSNT_03222___ 888 GATTATGAGC-GGTCACACATATAGT-GCACATCC-CTATTCAGCCAAAG 934
||| .|| |||||.||.|||||| ||| |||| || ||||||| |
BPUM_0612___y 900 GAT----GGCAGGTCATACCTATAGTGGCA-ATCCGCT-TTCAGCC---G 940
BSNT_03222___ 935 CTG---CTCTTGAAGTTTTGCGATATGTGTTAAAGCA-CGGCTTGATCAA 980
|.| |.||.|..||..|.||.|||.||..|||.|| |.||||..| .|
BPUM_0612___y 941 CCGTCTCACTGGCTGTCATTCGTTATATGAAAAAACATCAGCTTCCT-GA 989
BSNT_03222___ 981 ACAATCAGAAAAAAAGGGCGCTGTGCTG-----------AAGAA------ 1013
||.|.| ||..|||| ||| |.|||
BPUM_0612___y 990 ACGAGC----------GGATCTGT-CTGGTCGCTATTTAATGAACGCCTT 1028
BSNT_03222___ 1014 AAAGCTTGATGAGGCGGCATCTCAAAGC--GGCATTATAGGTGATGTGCG 1061
|||| ||.|.|..| .||||.| ..|||.|||||.||||||.|
BPUM_0612___y 1029 AAAG------GAAGTGCAA--ACAAACCATTTCATCATAGGAGATGTGAG 1070
BSNT_03222___ 1062 CGGAAAAGGACTGCT-ATTAGGCATTGAATTTGTGGCAGACC-------- 1102
.|||||.|||||||| ||| ||||||||.|||||.|||||||
BPUM_0612___y 1071 AGGAAAGGGACTGCTCATT-GGCATTGAGTTTGTCGCAGACCGCCTGTCG 1119
BSNT_03222___ 1103 AAAAAACGAAGAAAGTGTTTCC-GCCAGAGCAGGC---GGTAACCCAGCT 1148
||||.||.| ||||| ||| ||.|| ..|.||.|| .|
BPUM_0612___y 1120 AAAACACCA--------TTTCCTGCC----CATGCTCAAATGACGCA-TT 1156
BSNT_03222___ 1149 TATT------GTCAGCGAGGCGAAAAAACGCGGGC-TGATTGTTTATCCT 1191
||.| |.||||||.||.||| .||| ||.|.||.||.||.
BPUM_0612___y 1157 TAGTCGTTGAGACAGCGAAGCAAAA------TGGCTTGCTCGTATACCCA 1200
BSNT_03222___ 1192 TCCAAAGCTGGAATAGACAGTGGAGAAGGAGATGCTG---TCATTATTGC 1238
.|.|..||.|| .||...|||||..||||.|||.| ||||.|||||
BPUM_0612___y 1201 GCAAGTGCCGG---TGAGGATGGAGTGGGAGGTGCAGCGATCATGATTGC 1247
BSNT_03222___ 1239 TCCTCCTTTTACCAT--TTCAGACGTTGAAATGGAAGAGCTTATCTCTAT 1286
.||.||..||.|||| ..|||..| ||.|||||.||.||.|| ||.||
BPUM_0612___y 1248 ACCGCCGCTTTCCATCACGCAGCAG--GAGATGGATGAACTCAT-TCAAT 1294
BSNT_03222___ 1287 TTTTT---CAGA--AACAGTTGCAGCGGTCGAA-AAAAACTTAAAAA--- 1327
|.||| |||| |.|| .||| ||||||| ||.||.|.|..||
BPUM_0612___y 1295 TATTTGAGCAGACCATCA--CGCA--GGTCGAACAAGAAGTCATCAACCG 1340
BSNT_03222___ 1328 AGGATT------------GA----- 1335
|||.|| ||
BPUM_0612___y 1341 AGGGTTTTTCCCATCTGCGATGTAG 1365
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