Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03217 and BPUM_0610

See Amino acid alignment / Visit BSNT_03217 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_03217___yodP.1.24716.seq
#    -bsequence dna-align/BPUM_0610.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03217___yodP-BPUM_0610.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03217___yodP-BPUM_0610.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03217___yodP
# 2: BPUM_0610
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 990
# Identity:     516/990 (52.1%)
# Similarity:   516/990 (52.1%)
# Gaps:         306/990 (30.9%)
# Score: 1102.5
# 
#
#=======================================

BSNT_03217___      1 ATGCT-CAAGTCAATAA------AGAGTAGCGGTGT------CACAGCAG     37
                     |||.| |||.|.||.||      |.|..||||.|.|      |.||.|.|
BPUM_0610          1 ATGGTGCAATTGAAAAAACTTGCAAACGAGCGTTTTTCTGCCCTCATCTG     50

BSNT_03217___     38 TTTTGGACCATGACGGTTTTAATAAACGAATCAGAGTGGTCCGTT---AT     84
                     |.|||...||       ||||||.|.||||         ||||||   ||
BPUM_0610         51 TATTGATTCA-------TTTAATGAGCGAA---------TCCGTTTAGAT     84

BSNT_03217___     85 GA------CGG-AGCCATTGAGAAGGTTCTGCCGGAT--------ATCGT    119
                     ||      ||| ||          ||   |||.||||        ||| |
BPUM_0610         85 GATTATAGCGGCAG----------GG---TGCGGGATGTGATTCAATC-T    120

BSNT_03217___    120 G----GCAGCGGCAAAAGAAG----AGAATGCA--GAAAAAATCATCGTC    159
                     |    .|||        ||||    |||.||||  |          |.||
BPUM_0610        121 GTTCTTCAG--------GAAGCCTCAGACTGCAAGG----------CTTC    152

BSNT_03217___    160 TA-------TGCGAAGCAGCATGA--TGAGCCAATGCTTGCC--------    192
                     ||       ||.|||  ||.|.||  |||||  |||  ||||        
BPUM_0610        153 TAAGGTTATTGTGAA--AGTAAGACGTGAGC--ATG--TGCCGCTTTTTT    196

BSNT_03217___    193 ---AAACAATTATTTGCGCCGGAGGGCTATC----TAAAGGGCTATTATC    235
                        |||                |.||||.||    |.|||||.|.||.||
BPUM_0610        197 TAGAAA----------------AAGGCTTTCGGCTTGAAGGGGTGTTTTC    230

BSNT_03217___    236 TCGGCCA----TTCGGCTT----GTG----TCATGGTA-----CGTTATC    268
                     |    ||    |||  |||    |||    |.|.||||     |.||.||
BPUM_0610        231 T----CATTATTTC--CTTGGAAGTGACGCTTACGGTATGTCGCTTTTTC    274

BSNT_03217___    269 TGTCAGAAAGCCGAA-GACAAACAGATTCTTAT---ACAGAGGAACAGGA    314
                     |..|.||....|||| |   ||||| |||.|||   ...|||||..|.||
BPUM_0610        275 TCACTGAGGATCGAATG---AACAG-TTCGTATTGGTTGGAGGAGGATGA    320

BSNT_03217___    315 GATCATCGAAGCCAT-----------ATATC-------------GCACAG    340
                     ||||.|||.|.||||           |.|||             ||||| 
BPUM_0610        321 GATCGTCGCATCCATTCAAGCAAAAGAAATCAAAGAAGACCAAGGCACA-    369

BSNT_03217___    341 CGCCCCGTCTTCGCA--ACGACAGTAAACCCGTTTTTACGATGAGAAAAG    388
                               |.|||  |.|  ||||          |..||||||.||||
BPUM_0610        370 ----------TGGCAGGATG--AGTA----------TGTGATGAGGAAAG    397

BSNT_03217___    389 CAGAAACAAACGACATGTACCAGCTATCGATGCTGTATAAAAAAGTATTT    438
                     |.||..|.||.||.||..|..||||..|.|.|||.|||.|.|..||.|||
BPUM_0610        398 CGGATCCGAAAGATATTCATAAGCTGGCAAAGCTCTATGATACGGTCTTT    447

BSNT_03217___    439 CGCACGTACCCAACCCCAGTATTTGACC----CCGCTTATATTGAAAAGA    484
                     ...||||||||.||.|||    .|||.|    |.|.|||||||||||||.
BPUM_0610        448 GAAACGTACCCTACGCCA----ATGAACGAGTCAGATTATATTGAAAAGG    493

BSNT_03217___    485 CGATGAATGCAAATACGGTGTATTATATCATGTTTGATCATGACCGCC--    532
                     ..|||.|.|.|...||..|.|.||||.|  || ||||.||||||.|.|  
BPUM_0610        494 TAATGGAGGAAGGGACAATTTTTTATGT--TG-TTGAACATGACGGACAC    540

BSNT_03217___    533 --TGATCAGCGCAGCAAGCGCAGAAATCAATCCAGAGCTTGGGCATGCAG    580
                       || |.||.||||||..|||.|||||||||.|...|..|||.|||||||
BPUM_0610        541 ATTG-TAAGTGCAGCATCCGCTGAAATCAATGCGCCGTATGGTCATGCAG    589

BSNT_03217___    581 AAATAACCGATTGCGCTGTGCTGCCGGAATAT------CGCGGCCATTCG    624
                     ||.||||.|||||.||....||.||...||||      |..||  |||  
BPUM_0610        590 AATTAACAGATTGTGCGACCCTTCCTTCATATAGAAAACTAGG--ATT--    635

BSNT_03217___    625 TTAACAAGCTT--TTTAA-TCGAGGCGTTAGAAAAAGAAATGGCTGGA--    669
                         ||.||.|  ||||| ||.| ||..|.|||||||||    ||..|  
BPUM_0610        636 ----CATGCATCATTTAATTCTA-GCACTTGAAAAAGAA----CTCCAGT    676

BSNT_03217___    670 --AAGGATATCTTTCATGTGTT---TTCTCTCGCCCGTGCTTCGTCTTTT    714
                       |.|.|||||||   |||.||   |||.||.||||||||...|||.|.|
BPUM_0610        677 CGATGCATATCTT---TGTCTTTTATTCACTTGCCCGTGCACTGTCCTAT    723

BSNT_03217___    715 GGGATGAATGCTGTGTTGTACCA--TTCAGGTTATCAATAT----GGCGG    758
                     ||.||||||...||.||.||.||  ||  ||||||...|||    |||  
BPUM_0610        724 GGAATGAATCAAGTATTTTATCAGCTT--GGTTATACGTATACTGGGC--    769

BSNT_03217___    759 AAGGCTGATC---AATAATTGCTTTATA-----GCCGAAGGCCTTGAAAA    800
                        |||  ||   ||.||.||  |||||     |.|.||   .|||||.|
BPUM_0610        770 ---GCT--TCCAAAACAACTG--TTATATTTTTGACAAA---ATTGAAGA    809

BSNT_03217___    801 CATGAATATTTGGTGCAAGCAAC------TGTAA------    828
                     .||||||.|.|||..|||  |||      || ||      
BPUM_0610        810 TATGAATCTATGGGTCAA--AACGCCGAATG-AATCATGA    846


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