Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01095 and BPUM_0593
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:43
# Commandline: needle
# -asequence dna-align/BSNT_01095___yebC.1.24716.seq
# -bsequence dna-align/BPUM_0593___yebC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01095___yebC-BPUM_0593___yebC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01095___yebC-BPUM_0593___yebC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01095___yebC
# 2: BPUM_0593___yebC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 981
# Identity: 482/981 (49.1%)
# Similarity: 482/981 (49.1%)
# Gaps: 357/981 (36.4%)
# Score: 993.0
#
#
#=======================================
BSNT_01095___ 1 ATGACGGAAGAAAGAAAAGAAACGTTTGAAGAAGAAATTA-ACCAGAGTG 49
|.|..||| |||||| ||||||..|||.|| |.||||.|.
BPUM_0593___y 1 ---ATGTTAGA---AAAAGA------TGAAGAGCAAAGTACATCAGACTT 38
BSNT_01095___ 50 AAAGAATAGATGCAGATGAAGAACCGCTATCGAGAAT--GTCCAGAAAGG 97
||| ||| |||||| ||.||| ||| .||.|||||
BPUM_0593___y 39 AAA-AAT---------TGAAGA---GCCATC---AATAGATCAAGAAA-- 70
BSNT_01095___ 98 CGAGCCGGCAAAGC-----AAGCAGAAGC----AAAAAC----AAAAAC- 133
||| |||||..| .||||||||| .||||| ||.|||
BPUM_0593___y 71 CGA---GGCAATCCCGCCTTAGCAGAAGCGCCGCAAAACGTGGAAGAACG 117
BSNT_01095___ 134 -----AGAAACCGCGCCA--GGAACGCGGTGA---ATCAACTGTTAAAGA 173
||.||..|||.|| ||| .|.||| .||.||..||.||..
BPUM_0593___y 118 TCGAAAGCAAAAGCGGCATCGGA---TGATGAGCGTTCTACCATTCAACG 164
BSNT_01095___ 174 CAAGCTTGC---GTCT---------GTTTGGGCAGCCATCAACAGATATT 211
.|.|| ||| ||.| ||||..|| ||.|| |.|..||||
BPUM_0593___y 165 TATGC-TGCAAGGTGTAGGAGGCGCGTTTAAGC-GCTAT-AGCTCATAT- 210
BSNT_01095___ 212 GCGGTTTTGCGTTCTCGATTTTAAAATCACCG------------------ 243
||..||| ||||.||||||||||||
BPUM_0593___y 211 --GGACTTG------CGATGTTAAAATCACCGAGCCAGGCCATCAATCAA 252
BSNT_01095___ 244 GCGAAAACTGTCGTAACGGATGGTTTTTCTCATTATAAGTACGGTCTGAT 293
|||.||| |.|.||||||| |||||.|.|..|||
BPUM_0593___y 253 GCGGAAA----CATTACGGATG--------------AAGTATGCTTGGAT 284
BSNT_01095___ 294 TTCAATGCTTATATTCAGTATCATTTTTTCAATTGGGAATTGGTTTCAGT 343
.||.||..|..|||||||..|..|||||.|..|.||.||.|...||||.|
BPUM_0593___y 285 CTCGATTGTGTTATTCAGCGTGTTTTTTGCTTTAGGCAACTATGTTCAAT 334
BSNT_01095___ 344 TAAAGGC----AAGCTGGAATCGGCCGCTCGGTTTCGGAGAACGCCATCA 389
||||||| ||| .||||.|| ||.|
BPUM_0593___y 335 TAAAGGCGTCAAAG------------ACTCGTTT------------ATTA 360
BSNT_01095___ 390 TGCTTTCTATGACGGGTTTTTAGTTGTTCTTGTGTATTTGCTGA--TATT 437
.||||| ||..||.| ||..||| ||||.||| ..||
BPUM_0593___y 361 GGCTTT--------GGCATTCA-TTACTCT------TTTGGTGACGCCTT 395
BSNT_01095___ 438 TTTCGCGGTAATGGTCTT-----------TGCT-------AT-ATGGGCT 468
|||...||||..|.|||| |||| || || |||
BPUM_0593___y 396 TTTGAGGGTAGCGATCTTTACACTCATTCTGCTCACACTGATGAT--GCT 443
BSNT_01095___ 469 ----GTCT----------------CCCGCT----------ATATGA-TGA 487
|||| |..||| ||||.| |||
BPUM_0593___y 444 CACCGTCTGGTTACTCGGAAAGTACATGCTAAAAGGAAACATATCACTGA 493
BSNT_01095___ 488 AGCAGAAGGTGACGTTCAGAGAAG--CGGCTGCCGTATTGGGTTCATTGC 535
| |||| |||| ||| .|||| .|| |||||.| |
BPUM_0593___y 494 A--AGAA-GTGA---TCA-TGAAGTTTGG-TGCCGCA------------C 523
BSNT_01095___ 536 TTGTACCGGTAATTGCTGTT-TCAATCCTTTGGCTGATCTTTGCGATCGT 584
||||.||||| .|||.|.|| ||.|||||||||||..|.||.||.||..|
BPUM_0593___y 524 TTGTTCCGGT-TTTGGTTTTATCGATCCTTTGGCTTGTATTCGCCATGCT 572
BSNT_01095___ 585 GAATATCCCA-ATGCTGACAGTACTGTTTA-CGGTGCTGATCTTGTTT-- 630
||||||.||| ||| ||||.|| |..|||| |.|||.||||.||.|||
BPUM_0593___y 573 GAATATTCCATATG-TGACGGT-CATTTTATCTGTGATGATGTTCTTTGG 620
BSNT_01095___ 631 --TCCA-TCTTTTTTATCATCGCGCT-GTATGTACAGCGTGTGTAC---- 672
|||| | |.||.|||.| |||| ||| |.|
BPUM_0593___y 621 TCTCCAGT--------TGATTGCGGTCGTAT--------TGT-TTCGCTC 653
BSNT_01095___ 673 ----CAGGCGG--CACAAGA-TGCACCAATTGATTATATCTAT------T 709
||..||| ||.||.| .||||....|||||..||.||| |
BPUM_0593___y 654 GATTCAATCGGATCATAAAACGGCACGTGGTGATTTAATGTATACCGGCT 703
BSNT_01095___ 710 GTGTATTTGCAGTGGTTGCG---------ATAGCGCTGCTGTTTACGGCA 750
|.||.|||..|.||||.|.| ||.||.|||||
BPUM_0593___y 704 GGGTCTTTTTATTGGTGGAGCTTGTCATCATTGCACTGCT---------- 743
BSNT_01095___ 751 GTGACTTGGCCGTTTATT-TC--TGAATATTTTACGGCGTCGCTGATTCC 797
||.|||| ||| || .||.|||| |||||||
BPUM_0593___y 744 ----CTGGGCC----ATTGTCGGAGAGTATT------------TGATTCC 773
BSNT_01095___ 798 GCTTTAA------------------------ 804
||.|
BPUM_0593___y 774 ---TTCACTTGTGCCCGTTCGATTTGGATGA 801
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