Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01095 and BPUM_0593

See Amino acid alignment / Visit BSNT_01095 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:43
# Commandline: needle
#    -asequence dna-align/BSNT_01095___yebC.1.24716.seq
#    -bsequence dna-align/BPUM_0593___yebC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01095___yebC-BPUM_0593___yebC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01095___yebC-BPUM_0593___yebC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01095___yebC
# 2: BPUM_0593___yebC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 981
# Identity:     482/981 (49.1%)
# Similarity:   482/981 (49.1%)
# Gaps:         357/981 (36.4%)
# Score: 993.0
# 
#
#=======================================

BSNT_01095___      1 ATGACGGAAGAAAGAAAAGAAACGTTTGAAGAAGAAATTA-ACCAGAGTG     49
                        |.|..|||   ||||||      ||||||..|||.|| |.||||.|.
BPUM_0593___y      1 ---ATGTTAGA---AAAAGA------TGAAGAGCAAAGTACATCAGACTT     38

BSNT_01095___     50 AAAGAATAGATGCAGATGAAGAACCGCTATCGAGAAT--GTCCAGAAAGG     97
                     ||| |||         ||||||   ||.|||   |||  .||.|||||  
BPUM_0593___y     39 AAA-AAT---------TGAAGA---GCCATC---AATAGATCAAGAAA--     70

BSNT_01095___     98 CGAGCCGGCAAAGC-----AAGCAGAAGC----AAAAAC----AAAAAC-    133
                     |||   |||||..|     .|||||||||    .|||||    ||.||| 
BPUM_0593___y     71 CGA---GGCAATCCCGCCTTAGCAGAAGCGCCGCAAAACGTGGAAGAACG    117

BSNT_01095___    134 -----AGAAACCGCGCCA--GGAACGCGGTGA---ATCAACTGTTAAAGA    173
                          ||.||..|||.||  |||   .|.|||   .||.||..||.||..
BPUM_0593___y    118 TCGAAAGCAAAAGCGGCATCGGA---TGATGAGCGTTCTACCATTCAACG    164

BSNT_01095___    174 CAAGCTTGC---GTCT---------GTTTGGGCAGCCATCAACAGATATT    211
                     .|.|| |||   ||.|         ||||..|| ||.|| |.|..|||| 
BPUM_0593___y    165 TATGC-TGCAAGGTGTAGGAGGCGCGTTTAAGC-GCTAT-AGCTCATAT-    210

BSNT_01095___    212 GCGGTTTTGCGTTCTCGATTTTAAAATCACCG------------------    243
                       ||..|||      ||||.||||||||||||                  
BPUM_0593___y    211 --GGACTTG------CGATGTTAAAATCACCGAGCCAGGCCATCAATCAA    252

BSNT_01095___    244 GCGAAAACTGTCGTAACGGATGGTTTTTCTCATTATAAGTACGGTCTGAT    293
                     |||.|||    |.|.|||||||              |||||.|.|..|||
BPUM_0593___y    253 GCGGAAA----CATTACGGATG--------------AAGTATGCTTGGAT    284

BSNT_01095___    294 TTCAATGCTTATATTCAGTATCATTTTTTCAATTGGGAATTGGTTTCAGT    343
                     .||.||..|..|||||||..|..|||||.|..|.||.||.|...||||.|
BPUM_0593___y    285 CTCGATTGTGTTATTCAGCGTGTTTTTTGCTTTAGGCAACTATGTTCAAT    334

BSNT_01095___    344 TAAAGGC----AAGCTGGAATCGGCCGCTCGGTTTCGGAGAACGCCATCA    389
                     |||||||    |||            .||||.||            ||.|
BPUM_0593___y    335 TAAAGGCGTCAAAG------------ACTCGTTT------------ATTA    360

BSNT_01095___    390 TGCTTTCTATGACGGGTTTTTAGTTGTTCTTGTGTATTTGCTGA--TATT    437
                     .|||||        ||..||.| ||..|||      ||||.|||  ..||
BPUM_0593___y    361 GGCTTT--------GGCATTCA-TTACTCT------TTTGGTGACGCCTT    395

BSNT_01095___    438 TTTCGCGGTAATGGTCTT-----------TGCT-------AT-ATGGGCT    468
                     |||...||||..|.||||           ||||       || ||  |||
BPUM_0593___y    396 TTTGAGGGTAGCGATCTTTACACTCATTCTGCTCACACTGATGAT--GCT    443

BSNT_01095___    469 ----GTCT----------------CCCGCT----------ATATGA-TGA    487
                         ||||                |..|||          ||||.| |||
BPUM_0593___y    444 CACCGTCTGGTTACTCGGAAAGTACATGCTAAAAGGAAACATATCACTGA    493

BSNT_01095___    488 AGCAGAAGGTGACGTTCAGAGAAG--CGGCTGCCGTATTGGGTTCATTGC    535
                     |  |||| ||||   ||| .||||  .|| |||||.|            |
BPUM_0593___y    494 A--AGAA-GTGA---TCA-TGAAGTTTGG-TGCCGCA------------C    523

BSNT_01095___    536 TTGTACCGGTAATTGCTGTT-TCAATCCTTTGGCTGATCTTTGCGATCGT    584
                     ||||.||||| .|||.|.|| ||.|||||||||||..|.||.||.||..|
BPUM_0593___y    524 TTGTTCCGGT-TTTGGTTTTATCGATCCTTTGGCTTGTATTCGCCATGCT    572

BSNT_01095___    585 GAATATCCCA-ATGCTGACAGTACTGTTTA-CGGTGCTGATCTTGTTT--    630
                     ||||||.||| ||| ||||.|| |..|||| |.|||.||||.||.|||  
BPUM_0593___y    573 GAATATTCCATATG-TGACGGT-CATTTTATCTGTGATGATGTTCTTTGG    620

BSNT_01095___    631 --TCCA-TCTTTTTTATCATCGCGCT-GTATGTACAGCGTGTGTAC----    672
                       |||| |        |.||.|||.| ||||        ||| |.|    
BPUM_0593___y    621 TCTCCAGT--------TGATTGCGGTCGTAT--------TGT-TTCGCTC    653

BSNT_01095___    673 ----CAGGCGG--CACAAGA-TGCACCAATTGATTATATCTAT------T    709
                         ||..|||  ||.||.| .||||....|||||..||.|||      |
BPUM_0593___y    654 GATTCAATCGGATCATAAAACGGCACGTGGTGATTTAATGTATACCGGCT    703

BSNT_01095___    710 GTGTATTTGCAGTGGTTGCG---------ATAGCGCTGCTGTTTACGGCA    750
                     |.||.|||..|.||||.|.|         ||.||.|||||          
BPUM_0593___y    704 GGGTCTTTTTATTGGTGGAGCTTGTCATCATTGCACTGCT----------    743

BSNT_01095___    751 GTGACTTGGCCGTTTATT-TC--TGAATATTTTACGGCGTCGCTGATTCC    797
                         ||.||||    ||| ||  .||.||||            |||||||
BPUM_0593___y    744 ----CTGGGCC----ATTGTCGGAGAGTATT------------TGATTCC    773

BSNT_01095___    798 GCTTTAA------------------------    804
                        ||.|                        
BPUM_0593___y    774 ---TTCACTTGTGCCCGTTCGATTTGGATGA    801


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