Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05140 and BPUM_0591
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:48
# Commandline: needle
# -asequence dna-align/BSNT_05140___yvbU.1.24716.seq
# -bsequence dna-align/BPUM_0591___lysR.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05140___yvbU-BPUM_0591___lysR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05140___yvbU-BPUM_0591___lysR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05140___yvbU
# 2: BPUM_0591___lysR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1064
# Identity: 540/1064 (50.8%)
# Similarity: 540/1064 (50.8%)
# Gaps: 352/1064 (33.1%)
# Score: 1190.0
#
#
#=======================================
BSNT_05140___ 1 ATGACCATTACACAATTAAAGGTT---TTTGTGAAAATAGCTGAAA---- 43
||||.|.|| ||| |||| |.||.|.||.||
BPUM_0591___l 1 ATGAGCTTT------------GTTCGCTTTG---ATATTGTTGCAAAAGT 35
BSNT_05140___ 44 ---CG-----GGAAGCTTTACAAAAGCGGGTCAGGCGCTGAACATGACAC 85
|| ||.||.|||||...|||.|.|.|.||..|.||.|||||.|
BPUM_0591___l 36 GGTCGAGCTTGGCAGTTTTACCGCAGCAGCTGAAGCATTAAATATGACGC 85
BSNT_05140___ 86 AGCCGGCTGTCAGCCATGCGATTTCTGCGA---TCGAAGCTGAG------ 126
||.|.||.|||||.||||||.| .|||| |.|||.|.|||
BPUM_0591___l 86 AGTCCGCGGTCAGTCATGCGGT---GGCGAGTTTAGAAACGGAGTGGGAT 132
BSNT_05140___ 127 ----CTTGATGTAAAGCTGATCATTCGTGACCGCCGCAATGGCCTGATGC 172
|||.|| ||||||||||.||....||.|||.|.||||
BPUM_0591___l 133 GTGTCTTTAT----------TCATTCGTGATCGAAAAAAGGGCATTATGC 172
BSNT_05140___ 173 TGACAGATA-CGGGAAAACAGATCTTAGTA----CACATTAGAGAAGTCT 217
|.||.||.| .||..||||...||| ||.|||||||||||.|
BPUM_0591___l 173 TAACGGACATTGGTCAAACGCTTCT-----CCCGCATATTAGAGAAGTGT 217
BSNT_05140___ 218 TAAA-AGGCATT-GAAAAAGTTGAGCAGGTAGCAGCAGCG-----GAAAA 260
|||| || ||| ||.|||.|..|||| ||.|...||| |||||
BPUM_0591___l 218 TAAATAG--ATTGGAGAAAATCCAGCA---AGAAATTGCGTTAACGAAAA 262
BSNT_05140___ 261 A---------GGGCTTGAACTGGGAACGATCCATATCGGCACATTCTCAA 301
| |||||| |||.|..|||||.|||||..|.|
BPUM_0591___l 263 ATATCGAAACGGGCTT-----------GATTCGAATCGGAACATTTGCCA 301
BSNT_05140___ 302 CTGCCTCGGCTTATTTTATGCCGAAGCTGATCAGTGA-ATTTAAACAAAA 350
.|||.||.||||.|||..||||.||||||.| .|||| .|.|.|..||||
BPUM_0591___l 302 GTGCATCAGCTTGTTTATTGCCTAAGCTGCT-TGTGAGCTATCAGAAAAA 350
BSNT_05140___ 351 ATATCCGAAACTTGAGCTT--GTGCTGCACGAGGGAACTGTAAATGAAGT 398
|.||||||||.|.||..|| .|.|| |.|||||||| || ||||||
BPUM_0591___l 351 ACATCCGAAAATCGAATTTAAATTCT--ATGAGGGAAC-GT--ATGAAG- 394
BSNT_05140___ 399 CAA-----GGAGTGGCTTCATACGCGGATGATAGATGTTGGGATTCTTCT 443
|| |||||||||..|..|..|.||.||.||||||||..||.||.|
BPUM_0591___l 395 -AAATATTGGAGTGGCTGGACTCTGGCATCATTGATGTTGGTTTTGTTGT 443
BSNT_05140___ 444 G------TATCCAACAGAGGAGATGGAGTACATTCATT------------ 475
| ||| |.|||||.|| |.||
BPUM_0591___l 444 GAAAGGCTAT--------GCAGATGAAG------CTTTTGACTTGCTGCC 479
BSNT_05140___ 476 --TGAAAAAAGACAAAATGGCTGTCGTGCTCAGGGACGATCACC------ 517
|||..|||||..|.||||..||| |.|.||||.|
BPUM_0591___l 480 GCTGATCAAAGATGAGATGGTGGTC---------GCCTATCATCCAAATC 520
BSNT_05140___ 518 --CGCTTGC-----CGGTCATTCGGCCAT------TACGCTGAAAGATCT 554
|||||.| |.|| |||| || |.|.|||| |
BPUM_0591___l 521 ATCGCTTTCACCAGCAGT-------CCATTGTAGATA---TCACAGAT-T 559
BSNT_05140___ 555 TGAC-CATGAACCGATGAT-----CGTCTGTGACGGAGGCTATGAATCAC 598
||.| .|||||||..|.|| ||.|||..|.| |||.|||||
BPUM_0591___l 560 TGGCGGATGAACCATTTATTATGCCGACTGGCATG-----TATCAATCA- 603
BSNT_05140___ 599 CAT-TTGTCGATATGTTCAGGCAGGCGGGCGCTACGCTGCACCCAGCT-- 645
||| |.|..|||||.|| .||.|..|||....||.|.||||||
BPUM_0591___l 604 CATGTAGAGGATATTTT------TGCTGAGGCTCAATTGAAGCCAGCTAC 647
BSNT_05140___ 646 -----------TTCACG-------GTCTATAACATCAACACCTCGATCAG 677
|.|||| |.||| |.|.|| |
BPUM_0591___l 648 TTTATTTGAAGTACACGATTGTACGACTA-------------TTGCTC-G 683
BSNT_05140___ 678 TATGATCAGAGAAGGCCTGGGTCTCGCGAT-------------TTTATCA 714
||||.|..|.|||||.||.|||.||.|||| |||.|.|
BPUM_0591___l 684 TATGGTTGGGGAAGGACTTGGTGTCACGATAGGTCCTGAGCTGTTTTTAA 733
BSNT_05140___ 715 GAAATGTCCATGTCGGGGATGCCGCTGCCGGAGCATGTGGTGACCCGGGA 764
.|| |||.|| |||.|||| |.|
BPUM_0591___l 734 AAA-------------------CGCAGC---AGCTTGTG----CAC---- 753
BSNT_05140___ 765 ATTGGACCCGCAGGT-----------AT-ACCGTGATG-TGCAGCTTG-C 800
|||.|| |||.| || ||||.||.| ||| ||||| |
BPUM_0591___l 754 ATTCGA----CAGTTGAATGTCTCTCATCACCGCGAGGTTGC-GCTTGCC 798
BSNT_05140___ 801 TGTTCCGTCGCT-----AAAGGAGGCTTCTC------------------- 826
|| ||||||.|| || |||||||
BPUM_0591___l 799 TG-TCCGTCTCTCTCCCAA-----GCTTCTCCAGCAGTGAAAGAGTTTTT 842
BSNT_05140___ 827 ---TGGCGGCTAAGCTCTTTATTG----AGATGGCTAAGGAGCTGTTTGG 869
||..|.|.||||..||| ||| ||| .||||| |||||
BPUM_0591___l 843 CCATGTAGCCGAAGCGGTTT-TTGCAAAAGA----GAAGGA----TTTGG 883
BSNT_05140___ 870 AGCA----GAATAA 879
||.| |.||||
BPUM_0591___l 884 AGAAGGGTGTATAA 897
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