Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03073 and BPUM_0586
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_03073___yoaA.1.24716.seq
# -bsequence dna-align/BPUM_0586.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03073___yoaA-BPUM_0586.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03073___yoaA-BPUM_0586.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03073___yoaA
# 2: BPUM_0586
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 681
# Identity: 329/681 (48.3%)
# Similarity: 329/681 (48.3%)
# Gaps: 261/681 (38.3%)
# Score: 642.5
#
#
#=======================================
BSNT_03073___ 1 ------------------------ATGTTTCC-----TATATTA--GAAA 19
|..||||| ||.| || ||||
BPUM_0586 1 ATGAACAAAATCAACTTTCCACAAACATTTCCAACCATACA-TACCGAAA 49
BSNT_03073___ 20 CGGATCGGCTTACACTTAGGCAAATC-----ACTGATC-AGGATGCGGAA 63
|.|||..||| |||.| || |||| |.||.||.||.
BPUM_0586 50 -------GATTAATCTT----AAAACAAGCGAC-GATCGAAGACGCTGAG 87
BSNT_03073___ 64 GCCATTTTTGC----TTGTTTCTCAAACGATGAGGTGACA--------CG 101
| .|.||| .|.|||.||.|| |||.| ||
BPUM_0586 88 G----ATATGCATATCTATTTATCCAA--------TGAAACCGTCTGCCG 125
BSNT_03073___ 102 CTATTATGGGCTTGAA--AACATGGAATCTAT-------AGAACAGGCCA 142
||| .||||||.|..| .|||| |||||.|| |.||.|||..|
BPUM_0586 126 CTA-CATGGGCATCGATGCACAT-GAATCCATCGAAGACACAAAAGGAGA 173
BSNT_03073___ 143 TTTCA------ATGATTCAAACGTTTGCTGCCCTCTATC----AAGAA-A 181
..||| |||| ||| |||| ||||| |
BPUM_0586 174 AATCAAGTGGTATGA--CAA---------------TATCTTCAAAGAACA 206
BSNT_03073___ 182 AACGCGGTATACGGTGGGGAATTGAAAGACGGGACACT---AAAGAACTG 228
||| .||.||.||||||||.||| .|| ||||| ||
BPUM_0586 207 AAC-AGGCATCCGGTGGGGCATT------------TCTTTAAAAGA--TG 241
BSNT_03073___ 229 ATC---GGAACAATAGGC---------TTTC---ACGCTCTGGCCCAAAA 263
||| .||.| ||.||| |||| || .|||...||.|
BPUM_0586 242 ATCCTGCGATC-ATCGGCAGCTGTGGATTTCTTAAC---TTGGAAAAACA 287
BSNT_03073___ 264 GCATAGGCGCGCGGAGATCGGTTATGAAAT-CATCCCGGAGCATTGGCGA 312
|||..|.|||.||||.||.||.||||||.| || ||..||.||||||.||
BPUM_0586 288 GCACTGCCGCACGGAAATTGGCTATGAATTACA-CCATGATCATTGGAGA 336
BSNT_03073___ 313 AACGGATTTGCATCA-----GAAGTCATTTCAAAGGTCGTA-TCTTACGG 356
||.| |||||| |||| |||..||.|.| |.|||| |
BPUM_0586 337 AAAG-----GCATCATGAGCGAAG------CAATTGTTGCAGTGTTAC-G 374
BSNT_03073___ 357 AT-----TTTC------TGCCCTTGGACTGTCGCGTATTGGCGCAGTTGT 395
|| |||| ||..|.||.|| ||.||||..|
BPUM_0586 375 ATATGGATTTCAGGAAATGAACCTGAAC-----CGGATTGAAG------- 412
BSNT_03073___ 396 ATTTACCGCTAATGAAGCATCAAA----TCGTCTGCTTCTAAAAATGGG- 440
||..||.|||..||.|||| ||.|||| ||| ||..||.||
BPUM_0586 413 -----CCATTATTGATCCAGCAAATACGTCCTCTG-TTC-AATTATTGGA 455
BSNT_03073___ 441 ---TTTTCAAAAAGA-----------AGGCGTT--TTAAGACAGTAC-AT 473
|||| || ||| ||| ||.||..||||| ||
BPUM_0586 456 GAATTTT------GATTTTGTTCGAGAGG-GTTTATTGAGGGAGTACGAT 498
BSNT_03073___ 474 GT--ATCAAAATGGGATTCCATATGATACAAATG----TGTACTCTATTG 517
.| .||||.|||||.|| .||||| .|| ||||.||||||.
BPUM_0586 499 CTTGGTCAACATGGGTTT---GATGAT----GTGTTTATGTATTCTATTT 541
BSNT_03073___ 518 TGAAAC--------------CAAGAGAATGA 534
||||.| |||.||
BPUM_0586 542 TGAAGCGGGATTACAATACACAATAG----- 567
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