Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00830 and BPUM_0580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:35
# Commandline: needle
# -asequence dna-align/BSNT_00830___ydcL.1.24716.seq
# -bsequence dna-align/BPUM_0580___int.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00830___ydcL-BPUM_0580___int.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00830___ydcL-BPUM_0580___int.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00830___ydcL
# 2: BPUM_0580___int
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1553
# Identity: 656/1553 (42.2%)
# Similarity: 656/1553 (42.2%)
# Gaps: 721/1553 (46.4%)
# Score: 1187.5
#
#
#=======================================
BSNT_00830___ 1 ATGTCTGTAAAA-AAACTTGAAAATGGTCAATATC---------AAGTTG 40
.||.|||| ||||..|||||.....|||||| |..|.|
BPUM_0580___i 1 ----TTGAAAAAGAAACAAGAAAAAACAAAATATCCGGGAGTCTATATAG 46
BSNT_00830___ 41 ACG-------------------TTAGT-----TTTGGATTTGACCCGATT 66
||| |.||| ||||||.|.||.|..||.
BPUM_0580___i 47 ACGAAAAAGGAAGATTCTTTTATCAGTCTGAATTTGGAATAGATCGTATA 96
BSNT_00830___ 67 ACTGG----------AGAAAGAATTAGGACG----------------AGA 90
||.|| |||||.|| ||||.| |.|
BPUM_0580___i 97 ACAGGTAAGAGGATAAGAAAAAA--AGGAAGAAAAGATGCTAATGGAAAA 144
BSNT_00830___ 91 CCAGTAGCATCAACC---------AGAAAAGAGGCTTTA----GAATTAG 127
||..|.||||||.|| |..|||||| ||| ||.|.|.
BPUM_0580___i 145 CCCTTTGCATCAGCCTTTGAGGCTAATAAAGAG---TTAACACGATTGAA 191
BSNT_00830___ 128 AAG---------CAAAATTAAGAA----GAGAATTTCAAGAAGA---AAG 161
||| .|||.||||.|| ..|||||..||||.|| |.|
BPUM_0580___i 192 AAGAGAATACCATAAAGTTAATAACTTCTCGAATTATAAGATGACTTACG 241
BSNT_00830___ 162 AGCAA-----GA---AAGTCCAGAT--------------CAGTAAGCT-- 187
|.||| || |||||.|.|| ||| |||.|
BPUM_0580___i 242 AACAATTCATGAACCAAGTCTATATACCTTATTACCAAACAG-AAGTTGA 290
BSNT_00830___ 188 ------TTCCGACTCTAATTTCAATTTA------------TTTAGCAAAT 219
|.|| |||.||.||| ||.|..||||
BPUM_0580___i 291 AGAAAGTACC--------TTTGAAGTTAGGGAAGGGATTCTTGAAAAAAT 332
BSNT_00830___ 220 TGTGAAATAGATAG------------------TAAACCA--AACTATTAT 249
||.|||||| ||.|.|| |.|||| |
BPUM_0580___i 333 -----AAAAGATAGGTTTGGTTCGATGTCTCTTAGATCAATATCTAT--T 375
BSNT_00830___ 250 CAGAAT---CAGAAA------TACAT---TATAAACAAAC---------- 277
.||.|| || ||| ||||| |||.|||.|.|
BPUM_0580___i 376 GAGGATGTACA-AAATTTCCGTACATGGCTATTAACGAGCAAAAAAAGAG 424
BSNT_00830___ 278 ----------ATATATCTGATTAC-------------TTTTTG------- 297
|||| |||.|.|.| ||||||
BPUM_0580___i 425 GAGGAGCTGGATAT-TCTCAATCCTACGCTAGTATGGTTTTTGGCGTCTT 473
BSNT_00830___ 298 ----------------AAATC---TGAT--------------ATACAAAA 314
|||.| |||| ||||||.|
BPUM_0580___i 474 TCGACAGAGTTTAGATAAAGCAGTTGATATGCAGTATTTGGAATACAATA 523
BSNT_00830___ 315 AATCACACA----TAGAGAAATAACTGATTTCAG--AAAACATT------ 352
.||||.|.| ||.||.||||.|..| || |||.||.|
BPUM_0580___i 524 TATCAAAGAAAGTTAAAGCAATACCAAA----AGGTAAAGCAGTTGTTGC 569
BSNT_00830___ 353 -TAATGGA-AACAG----GTCT----AAGCAATAAATCGGTTAATAATAT 392
||.|||| ||.|| ||.| |||.|||||||| ||...|||
BPUM_0580___i 570 ATATTGGACAAAAGAAGAGTTTGAACAAGTAATAAATC----AAATTTAT 615
BSNT_00830___ 393 A---ATGACTAGTCTAAGCA---AAATTTT----TGATACAGCTG----- 427
| ||||||..|.|.|.|| ||||||| |||| .||
BPUM_0580___i 616 ATTGATGACTTTTATGAACACTTAAATTTTGTTATGAT----TTGGGTCT 661
BSNT_00830___ 428 --TACATGA--------AGA---AAT----------CTT----------- 443
||||||| ||| ||| |||
BPUM_0580___i 662 ATTACATGACCGGTATCAGAGTGAATGAAGGAACTGCTTTAAATTGGTCT 711
BSNT_00830___ 444 ------------AAAAAGAA----ATCCGTGTGACA----ACGTTAAACG 473
|||||||| ||.||||| .|| |.||| |
BPUM_0580___i 712 GATATTGATTTGAAAAAGAAACGTATGCGTGT-CCATCATATGTT----G 756
BSNT_00830___ 474 ATTACCTT-TAACAAGAA-AGAAAATGAAGTTTTGGAGACCAGAAGA--- 518
||| ||| .|||.|||| |||| ||||.| |||| |
BPUM_0580___i 757 ATT--CTTAAAACGAGAACAGAA----------TGGAAA--AGAA-ACTC 791
BSNT_00830___ 519 --ATTCAAAAAATTTATTAGTTTAATTCCTCAAGAT----------CAAT 556
||.|||||| ||.||||| |.||
BPUM_0580___i 792 TTATACAAAAA-----------------CTGAAGATGGAAAGAGAACCAT 824
BSNT_00830___ 557 T---ATTGTTTAAAACATTTTATACTGTTGCTTTTTTAACTGGACTAAGA 603
| .|||.|.|..|||.|.||.|| .|.|||| |||
BPUM_0580___i 825 TGCGCTTGATGATGACACTATAAAC-------ATATTAA-------AAG- 859
BSNT_00830___ 604 TGTG--GTGAAATGCTCGCCCTGCAATGGAAAGATATTGACAAAATCTTA 651
|.|| |||||| ||.||.|| ||.|.|..|
BPUM_0580___i 860 TTTGGCGTGAAA----------------GACAGCTA---ACTATAGGT-- 888
BSNT_00830___ 652 TTAG---AAATAGATG----TGCATAAATCGTGCACCTGGCT-TGATGGT 693
|||| ||.|||||| || ||.| |.|.| |||||||
BPUM_0580___i 889 TTAGGGAAAGTAGATGATTTTG------TCTT-----TAGTTATGATGGT 927
BSNT_00830___ 694 CAATTTGTTGTTACTACTCCAA-----AAACCAAAAATTCGATTCGGCGA 738
||| ||.| |||.|||.||||
BPUM_0580___i 928 -------TTG--------CCCATGATTAAATCAACAATT----------- 951
BSNT_00830___ 739 GTTAGCA-------TCAATA--AAAAATTGCTTAAGCTACTAGAAAGCTG 779
|.|||.| ||.||| .||||||| ||.|
BPUM_0580___i 952 GGTAGGATGCTTTCTCGATATGCAAAATTG----------------GCGG 985
BSNT_00830___ 780 GA---AAGAAG-CACAA--GAAGAGTTGTTTAATGAATTAGGTATTAGAC 823
|| |||||| .|||| |||| ||..|..|.|
BPUM_0580___i 986 GAGTGAAGAAGATACAAGCGAAG-----------------GGGCTACGCC 1018
BSNT_00830___ 824 ATTCACATGACACCTATATCT-----TTCAATATAAAGATACA------- 861
||||||||| ||.|| ||||| .|.|||.|||.|.|.||
BPUM_0580___i 1019 ATTCACATG-CATCT-TATCTAATCAATGAATTTAATGTTTCAGTTCTTG 1066
BSNT_00830___ 862 --------------------CCTTCAAGAAAAGATATTTTCAGTCGGAAG 891
|.||||||...|||.|| .|.
BPUM_0580___i 1067 TTTTATCCCAACGTATGGGCCATTCAAGTCCAGAAAT----------CAC 1106
BSNT_00830___ 892 ATTAAATACTTTTGCAAGGATAGCGATCTTACTCCTATACGT-------- 933
|||||| ||| |||..||.|||.||
BPUM_0580___i 1107 ATTAAA-------GCA------------TTATGCCCATATGTGGACTGGG 1137
BSNT_00830___ 934 -----TTACATGATTTTAGACATTCACACG--TTGCACTATTAATACACC 976
|.|.|.|||...|||.|| .|.| |.|.|.||||||||.|
BPUM_0580___i 1138 GCGGATAATACGATAGCAGAAAT---GATGGCTGGAAATATTAATATA-- 1182
BSNT_00830___ 977 AAGGAGAAGATTACAT----AACAATTAAAGAGCGTTTAGGAC-ATGGT- 1020
||||.|.||| |||| |||...||||| | |||||
BPUM_0580___i 1183 ------AAGACTGCATCTGAAACA---AAACTTCGTTT----CAATGGTA 1219
BSNT_00830___ 1021 -TCTG----TAAAAACAACAATTGATGTTTATGGA----CACCTATA--- 1058
||.| ||||.| |.|| || ||||.|.|
BPUM_0580___i 1220 ATCAGGCGATAAATA-AGCA-------------GAACCCCACCAAAAACC 1255
BSNT_00830___ 1059 --TCCAAACAAGCAAAAGG--AAATGGCTGATAAATTAGATGACTTACTT 1104
.|||||..||||||||| ||
BPUM_0580___i 1256 CCACCAAAGTAGCAAAAGGTTAA--------------------------- 1278
BSNT_00830___ 1105 TAG 1107
BPUM_0580___i 1278 --- 1278
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