Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00849 and BPUM_0572

See Amino acid alignment / Visit BSNT_00849 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:36
# Commandline: needle
#    -asequence dna-align/BSNT_00849___yddC.1.24716.seq
#    -bsequence dna-align/BPUM_0572___yddC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00849___yddC-BPUM_0572___yddC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00849___yddC-BPUM_0572___yddC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00849___yddC
# 2: BPUM_0572___yddC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 308
# Identity:     154/308 (50.0%)
# Similarity:   154/308 (50.0%)
# Gaps:         106/308 (34.4%)
# Score: 317.5
# 
#
#=======================================

BSNT_00849___      1 ATGGATTTCATGAATTTCTTTATTCTTGGTG------------CAGACCT     38
                     |||||.|||.||.||||..||.|..|.||||            ||||..|
BPUM_0572___y      1 ATGGAATTCTTGGATTTTCTTGTGTTAGGTGCAAAAGCAGGGTCAGATTT     50

BSNT_00849___     39 TCCAACACTTGGAG------------GGGTAAA--AGGTTGGGCATCAG-     73
                     .||.|||.|.||.|            |||.|||  ||||||.|.|.||| 
BPUM_0572___y     51 ACCGACATTAGGCGACTTAAAAAGCTGGGCAAAGCAGGTTGTGGAACAGG    100

BSNT_00849___     74 ------ATGTTGTTATCCAATTCATTACGATTG-TGGTCATGTTCATAGC    116
                           ||.|||||| |||  ||.||   .||| |.||.|..|||..|.|
BPUM_0572___y    101 CTATTTATATTGTTA-CCA--TCTTT---GTTGTTTGTAAATTTCTAATC    144

BSNT_00849___    117 CGCAAAGAATCTTATGAG-ATT--AAAAATGGGCGGCATTATCTTTGTTT    163
                         |||      ||||| |||  .|||||.|..|||||||       ||
BPUM_0572___y    145 ----AAG------ATGAGTATTGGGAAAATCGTTGGCATTA-------TT    177

BSNT_00849___    164 GCTGTATTGGCAGTGCGGTAACGTGGGTTATT--------AAACACTGGT    205
                     ||  ..|||..|||||..||      |||.||        ||  ||||||
BPUM_0572___y    178 GC--GCTTGCAAGTGCCTTA------GTTTTTGCCGTTCGAA--ACTGGT    217

BSNT_00849___    206 CAGAATTTTCCGG---CTGGATCAATGCGCTAATGGA--------AAAAC    244
                     |       |..||   ||||    |||.|   .||||        .||||
BPUM_0572___y    218 C-------TATGGTTACTGG----ATGGG---GTGGAGCATTACTTAAAC    253

BSNT_00849___    245 TGTAA---    249
                     |.|.|   
BPUM_0572___y    254 TCTTATAA    261


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