Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00849 and BPUM_0572
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:36
# Commandline: needle
# -asequence dna-align/BSNT_00849___yddC.1.24716.seq
# -bsequence dna-align/BPUM_0572___yddC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00849___yddC-BPUM_0572___yddC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00849___yddC-BPUM_0572___yddC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00849___yddC
# 2: BPUM_0572___yddC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 308
# Identity: 154/308 (50.0%)
# Similarity: 154/308 (50.0%)
# Gaps: 106/308 (34.4%)
# Score: 317.5
#
#
#=======================================
BSNT_00849___ 1 ATGGATTTCATGAATTTCTTTATTCTTGGTG------------CAGACCT 38
|||||.|||.||.||||..||.|..|.|||| ||||..|
BPUM_0572___y 1 ATGGAATTCTTGGATTTTCTTGTGTTAGGTGCAAAAGCAGGGTCAGATTT 50
BSNT_00849___ 39 TCCAACACTTGGAG------------GGGTAAA--AGGTTGGGCATCAG- 73
.||.|||.|.||.| |||.||| ||||||.|.|.|||
BPUM_0572___y 51 ACCGACATTAGGCGACTTAAAAAGCTGGGCAAAGCAGGTTGTGGAACAGG 100
BSNT_00849___ 74 ------ATGTTGTTATCCAATTCATTACGATTG-TGGTCATGTTCATAGC 116
||.|||||| ||| ||.|| .||| |.||.|..|||..|.|
BPUM_0572___y 101 CTATTTATATTGTTA-CCA--TCTTT---GTTGTTTGTAAATTTCTAATC 144
BSNT_00849___ 117 CGCAAAGAATCTTATGAG-ATT--AAAAATGGGCGGCATTATCTTTGTTT 163
||| ||||| ||| .|||||.|..||||||| ||
BPUM_0572___y 145 ----AAG------ATGAGTATTGGGAAAATCGTTGGCATTA-------TT 177
BSNT_00849___ 164 GCTGTATTGGCAGTGCGGTAACGTGGGTTATT--------AAACACTGGT 205
|| ..|||..|||||..|| |||.|| || ||||||
BPUM_0572___y 178 GC--GCTTGCAAGTGCCTTA------GTTTTTGCCGTTCGAA--ACTGGT 217
BSNT_00849___ 206 CAGAATTTTCCGG---CTGGATCAATGCGCTAATGGA--------AAAAC 244
| |..|| |||| |||.| .|||| .||||
BPUM_0572___y 218 C-------TATGGTTACTGG----ATGGG---GTGGAGCATTACTTAAAC 253
BSNT_00849___ 245 TGTAA--- 249
|.|.|
BPUM_0572___y 254 TCTTATAA 261
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