Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00846 and BPUM_0571
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:36
# Commandline: needle
# -asequence dna-align/BSNT_00846.1.24716.seq
# -bsequence dna-align/BPUM_0571___yddB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00846-BPUM_0571___yddB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00846-BPUM_0571___yddB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00846
# 2: BPUM_0571___yddB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1188
# Identity: 663/1188 (55.8%)
# Similarity: 663/1188 (55.8%)
# Gaps: 315/1188 (26.5%)
# Score: 1703.5
#
#
#=======================================
BSNT_00846 1 TTGCTCAAT---AAAGAAATCGGCTCTGATAAAAAAG-----AAGA--GT 40
|| ||||||| ||.||.| |||| ||
BPUM_0571___y 1 -------ATGAAAAAGAAA-----------AAGAATGACGGTAAGATGGT 32
BSNT_00846 41 CATT---------------TTTTCGGTCTGCCTTTCAAAAACTGAAACGA 75
|||| .||||.| ||||.||.|| |||.|
BPUM_0571___y 33 CATTGAAAACAATCCATTGCTTTCAG-----CTTTTAAGAA--GAAGC-- 73
BSNT_00846 76 ATTGAAAGACCGGAAAAAGACA-AACAGAAAGTC----------CC---- 110
||||||....|||||||.|| ||.||||| || ||
BPUM_0571___y 74 --TGAAAGGTGTGAAAAAGCCAGAAAAGAAA-TCTAAATCAATTCCAAAA 120
BSNT_00846 111 --TCGTGACAGGTCGAAACTGATAGCCGTCACAT-----TGTGGTC---- 149
|||| ||.|||.||||.|| ||| |.|||||
BPUM_0571___y 121 GATCGT------TCAAAAATGATTGC-----CATAGGTATATGGTCAATG 159
BSNT_00846 150 -TTGTGTCGGTGGCTTGCTGTTTATCTGCTTGCTCG-CTGTGCTTCTGTC 197
|||...||.| |.| ||.||| |||||.||.| |||||.|.|||||
BPUM_0571___y 160 ATTGCAACGCT--CAT-CTTTTT---TGCTTTCTTGTCTGTGTTGCTGTC 203
BSNT_00846 198 AATTAATACTCGCTCTCAACTTAATGACA-TGAAAG--ATGAAGCCAATA 244
.||.||||||.|.|||..|.|.||||||| |||||| ||.|||..||.|
BPUM_0571___y 204 GATCAATACTAGGTCTGTAGTAAATGACATTGAAAGGAATCAAGTGAAGA 253
BSNT_00846 245 --AGCCAACAAATGACGATAAACAAAAAATTTCGGTGACT------GCTG 286
|||.||||| |||.||.|| |||.|| ||||
BPUM_0571___y 254 ATAGCAAACAA--------AAAGAAGAA------GTGTCTATTGTGGCTG 289
BSNT_00846 287 CTGAAAACTTTCTGTCAGGGTTCATCAATGAATATGTGAATGTGAAGAAC 336
.|||....|||.|.||.||.|||||..|..|.||..|.||||| |||.
BPUM_0571___y 290 GTGAGCGTTTTTTATCTGGATTCATTGAGCAGTACATCAATGT---GAAA 336
BSNT_00846 337 AATCAA---GAATCTATTGAAAAACGT----ATACAGAGCCT---TGAAA 376
|||.|| |...||..||||.|.||| ||| ||| |||||
BPUM_0571___y 337 AATGAAAGGGCTGCTGCTGAACAGCGTCAAAATA-----CCTTGATGAAA 381
BSNT_00846 377 ---------GCTACATGGTGAAACAGGAGGATA-ACCACTTTGAAGATGA 416
||| .|||.||| |||| ||| ||||
BPUM_0571___y 382 TATCTTGTTGCT-GATGATGA--------GATAGACC------AAGA--- 413
BSNT_00846 417 AGAACGCTTCAATGTGGATGGTTTAA--------------AAGGTGATCG 452
||| |||||||.| |.||.|||||
BPUM_0571___y 414 --AAC------------ATGGTTTGATACATCTGGTGCGCAGGGGGATCG 449
BSNT_00846 453 AGAGTTGAAAGATTACAGCTTATATAACGTGAAAGAAGGTGAT--AAAAA 500
||..||.||.|||||...|.|.||.||.||.|||.|||||||| |.|..
BPUM_0571___y 450 AGTATTAAATGATTATGTCCTCTACAATGTCAAAAAAGGTGATGGAGATT 499
BSNT_00846 501 CAGCCTTTTTCAATATAAGGTCACATATGAAAATCTATACCCTGTAGAAA 550
|| |||||||||||||||||.|..||.||.|||.| ||||
BPUM_0571___y 500 CA--CTTTTTCAATATAAGGTGAATTACGAGAATGT------TGTA---- 537
BSNT_00846 551 AGGAAGTTGAAAAAGAAGTTAAAGACGGAAAGAAGAAAAAGAAGGTGAAA 600
|||.|.||||| |||||||.|.||.|.|
BPUM_0571___y 538 ---AAGGTCAAAAA-------------GAAAGAACATAAGGTA------- 564
BSNT_00846 601 GAAAAGGTTAAAACAAACGAAAAATCTGAGAAACAAATGTTGCTGAATAT 650
|||||||||...|||.|.|||||
BPUM_0571___y 565 ---------------------------GAGAAACAAGCATTGTTAAATAT 587
BSNT_00846 651 TCCAGTCACAAATAAAGATGATTCCTTTGCGGTATCTGCTGTCCCTTA-C 699
|||.||.|.|.||||||..|||...|||||.|||..||.|...||.|| |
BPUM_0571___y 588 TCCTGTGAAACATAAAGGAGATAAATTTGCTGTAAATGGTACGCCATATC 637
BSNT_00846 700 TTTACACAGATTTATGATCTGAAAGGCGATATTGCTTTTAAGGGAAAAGA 749
||| |..|.||.|||||.||.|||||.||||||||...||.| |||||
BPUM_0571___y 638 TTT-CGGAAATATATGACCTAAAAGGTGATATTGCAAATACG---AAAGA 683
BSNT_00846 750 AGAAACTAGAGACGAATATGCAGGCGAGAAAAAAGAATCTATCGAATCAT 799
||| |.|.||.|||||||..||.||..|||.||.|.|.||..||..||
BPUM_0571___y 684 AGA---TCGTGAGGAATATGACGGAGATCAAACAGCAGCCATAAAAGAAT 730
BSNT_00846 800 TTCTTCAA-AATTTCTT-TGAGAAATACGCTTCTGAAAAGAAAGAAGAAA 847
|| ||.|| |.|||||| .|| |||||.||....|||...|||||.||.|
BPUM_0571___y 731 TT-TTAAATACTTTCTTCCGA-AAATATGCGGAAGAATCAAAAGATGACA 778
BSNT_00846 848 TGGTTTATATGATGAAAAAGCCGGAAGCATTGGAAGGAAACTTGTTATTT 897
||...|||.|.|||||||..||.||..|.||..|.||..|..||.|||||
BPUM_0571___y 779 TGTCGTATGTCATGAAAACACCAGAGACTTTAAACGGTCATCTGGTATTT 828
BSNT_00846 898 GGGGAAGTGCAGTCAGTGAAAATCTTCGAGA---CGAAAAAAGGT----- 939
||.||.|| |||||||.|.||| | ..|||||||||
BPUM_0571___y 829 GGTGATGT--------TGAAAATATCCGA-ATTTATAAAAAAGGTGATGG 869
BSNT_00846 940 -TTCGAGGTTTTTT---GTGCTGTTCGATTTAAGGAAAAAGAAAATGACA 985
||.||.||.|..| .||||||| |||||.||.|||| |||.|| |
BPUM_0571___y 870 ATTTGAAGTATCGTCCGTTGCTGTT---TTTAAAGAGAAAG-AAACGA-A 914
BSNT_00846 986 TT--CCGGTAAATGAA------AAATTCAGTCTAGAGATTACGGAAAACA 1027
|| ||.|||||.||| |.||| |.|| |||..|.||||||
BPUM_0571___y 915 TTTGCCAGTAAAAGAACGTTTTACATT-ATTC-----ATTGTGAAAAACA 958
BSNT_00846 1028 GCGGTCAGTTTTATGTAAATAAACTCAAACATCAATAG 1065
|||||||.|.||||||.|||.||||.||||||||||||
BPUM_0571___y 959 GCGGTCAATATTATGTGAATCAACTAAAACATCAATAG 996
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