Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00841 and BPUM_0556

See Amino acid alignment / Visit BSNT_00841 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:35
# Commandline: needle
#    -asequence dna-align/BSNT_00841.1.24716.seq
#    -bsequence dna-align/BPUM_0556.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00841-BPUM_0556.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00841-BPUM_0556.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00841
# 2: BPUM_0556
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 300
# Identity:     154/300 (51.3%)
# Similarity:   154/300 (51.3%)
# Gaps:          90/300 (30.0%)
# Score: 322.5
# 
#
#=======================================

BSNT_00841         1 ----ATG--GTAGTGCACCATCTTAAGATATATCCAGAGTACTATGATGC     44
                         |||  ..|||.||..|.|||||.|||             |||..||
BPUM_0556          1 TTGAATGAAACAGTACATGACCTTAAAATA-------------ATGCCGC     37

BSNT_00841        45 TGTATT-----------AAAAGACG--TAAAGAAATTTGAAATTCGGAAA     81
                     ..||||           ||||.|.|  |||||...|||||||||||.|||
BPUM_0556         38 AATATTTATGGGCAATCAAAACAGGGATAAAGGGCTTTGAAATTCGCAAA     87

BSNT_00841        82 AACGACAG----GTTCTATATGGTCGGAGATACGCTGGTACTT------C    121
                     ||.|||||    .|||.|    ||.||.||||      |.|||      |
BPUM_0556         88 AATGACAGAGAATTTCAA----GTAGGTGATA------TCCTTCGTTTGC    127

BSNT_00841       122 ATGAAT----GGATGGATGAATTTACTGGGCGGAAATT---------AGA    158
                     .|||||    ||||||| .|.|.|||.||..||  .||         ||.
BPUM_0556        128 GTGAATATAAGGATGGA-CAGTATACAGGAAGG--CTTGTTTTGGGGAGG    174

BSNT_00841       159 AGCACAAATTATATATATTAC--TGATTATAAACAGCGTCCCGGTTATGT    206
                     |.|||   ||..|||..||.|  |||..|.|||.|      .|.||||||
BPUM_0556        175 ATCAC---TTTCATAACTTCCTTTGAACAGAAAGA------TGATTATGT    215

BSNT_00841       207 GGTTCTAGGCATTGAAAGAACTAAAGGGGGGATT-GTTCA---TGTTTAA    252
                     .| |||.|...||.|||..|||.||      ||| |.|||   |||.|.|
BPUM_0556        216 TG-TCTTGAATTTTAAAAGACTTAA------ATTGGATCAAGCTGTGTGA    258


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