Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00839 and BPUM_0554
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:35
# Commandline: needle
# -asequence dna-align/BSNT_00839.1.24716.seq
# -bsequence dna-align/BPUM_0554___ydcQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00839-BPUM_0554___ydcQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00839-BPUM_0554___ydcQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00839
# 2: BPUM_0554___ydcQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1453
# Identity: 456/1453 (31.4%)
# Similarity: 456/1453 (31.4%)
# Gaps: 857/1453 (59.0%)
# Score: 1464.5
#
#
#=======================================
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 1 TTGGTGTTGTGGAAATATAGAGGTATTCGTATCAGACGATATACCAGAAA 50
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 51 TAATCTAAGAATAACAGGTGCATTAATAAGTGTGCCTGTTTTTTTGTTGC 100
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 101 TCATGATATTGTTTTGGAGAAGTCATTTATGGGATGTATATGAAAAAGGA 150
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 151 ATAGAAGATACATTTGAAAACTTCACCTTTAATATTCCTTTGATTGTTAA 200
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 201 AAGTTTATTAGTGTCAATCATAGTGCCTGTTGCTTTGATATTAGTTTGGT 250
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 251 ATTTCATTTTTCATCAAAGTTACAAAAAAATTTATCACAGACAGAAAATA 300
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 301 GCACGTATGATATTTTCCAATAAGTTTTACGAATCAAAAAGTGTTAGGAG 350
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 351 TAAGATAACAGAAAAAACCGTTCAAAAAATATCGTATTTCCCAAAATTCT 400
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 401 ATTATCGAGTAAAAGACAATCATATCATCATTAAAATTGCTATGGATATG 450
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 451 AGTCGTTTTCAACAAAGGTTTATGGAATTAGGTAGGGAGTTTGAAAACGG 500
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 501 CTTATTTTGTGATTTAGTATCAACTGATATGGAAGATGGTTATTTCACCT 550
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 551 ACAAGCTCCTTTACGATGCGGGTAGAAACCGCATAGGGATTAATGAAGCC 600
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 601 ATAGTTGAAAAAGGGTCTATGACATTAATGAAGCATATTAAATGGGAGTT 650
BSNT_00839 0 -------------------------------------------------- 0
BPUM_0554___y 651 TGATAAGCTGCCGCATATGCTTATTAGCGGTGGTACAGGTGGTGGTAAAA 700
BSNT_00839 1 --------ATGCTAACGATCATTAAGGCATGTGTTGGACT--GGGGGCAG 40
||.||.|||.|..|.|||.|...||||| || .|||||.|
BPUM_0554___y 701 CGTATTTTATACTTACGCTTGTGAAGTCTCTTGTTG--CTTCTGGGGCGG 748
BSNT_00839 41 ATGTAAGAATACTAGACCCTAAAAATGCAGATTTAGCAGACTTGGAAGAA 90
||||..|.|||.|||||||.||||||||.|||||||||||.||.||||||
BPUM_0554___y 749 ATGTTCGTATATTAGACCCGAAAAATGCGGATTTAGCAGATTTAGAAGAA 798
BSNT_00839 91 GTACTTCCGA--AAAAGGTCTATTCCCAAAAGAACGGTATTCTTATG--- 135
||.|| ||| .||||||.|.|||.|..||||||||||||.|.|||
BPUM_0554___y 799 GTTCT--CGAGGGAAAGGTTTTTTCTCGTAAGAACGGTATTATGATGACT 846
BSNT_00839 136 -TGCCTGAGAAAGTCTGTAGATGGCATGATG-GAACGAATGGATGAAATG 183
||| |.|||||.||.||.|.||||||| ||| |.||||||||||||
BPUM_0554___y 847 TTGC----GGAAGTCCGTTGAGGACATGATGCGAA-GGATGGATGAAATG 891
BSNT_00839 184 AAGCAAAT--GTCTAACTATAAGACAGGTGAAAACTATGCCTATTTAGGC 231
|| |||| ..|.||.||||.||||||.||.||||||||.|..|||||
BPUM_0554___y 892 AA--AAATCATCCGAATTATAGGACAGGAGAGAACTATGCTTTCTTAGG- 938
BSNT_00839 232 TTA-AAACCTGTTTTTATCTTCTTTGATGAATATGTGGCGTTTATGGATT 280
||| ||.|||||.|||||..|.||||||||.|.|||.||.|||.|||||.
BPUM_0554___y 939 TTATAAGCCTGTCTTTATTGTATTTGATGAGTTTGTAGCATTTGTGGATA 988
BSNT_00839 281 TGTTAGATATGAAAGAAAGAAACGAAGCCCTTTCTTAC-----ATGAAAC 325
||.|.|||.|.|||||||||.| ||| |.|..||| ||.||||
BPUM_0554___y 989 TGCTTGATTTTAAAGAAAGAGA--AAG---TGTAATACAAGATATTAAAC 1033
BSNT_00839 326 AGTTGGTCATGTTGGGGAGACAGGCGGGTTACTTTCTCGTTTTAGGGGCA 375
|..|.||.|||.|.||.|||||.|||||.|..||.|||||....||.||.
BPUM_0554___y 1034 AAATAGTGATGCTTGGCAGACAAGCGGGCTTTTTCCTCGTGGCTGGTGCT 1083
BSNT_00839 376 CAACGTCCAGATGCAAAATATTTGGCTGACGGTATTCGAGATCAGTTTAG 425
|||.|.|||||.|||||||||||.||||||||.||..||||||||||||.
BPUM_0554___y 1084 CAAAGACCAGACGCAAAATATTTTGCTGACGGAATAAGAGATCAGTTTAA 1133
BSNT_00839 426 CTTCCGTGTGTCGTTAGGTTTAATGTCAGATACGGGCTACGGGATGATGT 475
.||..|..|.||.|||||...||||||.||.||.||.||.|..|||.|||
BPUM_0554___y 1134 TTTTAGAATATCTTTAGGAAAAATGTCCGAAACTGGTTATGCCATGCTGT 1183
BSNT_00839 476 TTGGTGATGTTGATAAAGCATATGTGAATAAAAAAGA---GACAGGGCGA 522
||||||||..|||||||..||..|| |.||||||| .|.|||..||
BPUM_0554___y 1184 TTGGTGATACTGATAAAAAATTCGT---TGAAAAAGATATTAAAGGTAGA 1230
BSNT_00839 523 GGATATGCCAATGTTGGCACTGGTTCAG------TGTTGGAATTTTACAG 566
|||||.|||.||| |.|||.||| |..||||||||||.||
BPUM_0554___y 1231 GGATACGCCTATG------CAGGTACAGGAAACATAATGGAATTTTATAG 1274
BSNT_00839 567 CCCTATCGTGCCGAAAGGATATGATTTTATGTCGTCTATTAA----AAAT 612
||||.|..|.||.||.|||||||||||.|| | ||||
BPUM_0554___y 1275 CCCTTTGATCCCAAATGGATATGATTTCAT-----------AGAGGAAAT 1313
BSNT_00839 613 GCG-CTGGTTGGAGTCGAGGGAGCGCAGGCGACGGCAGTCGCCAGCGGCA 661
.|| ||.|.| .|.||||||.||
BPUM_0554___y 1314 CCGACTTGCT------AAAGGAGCGTAG---------------------- 1335
BSNT_00839 662 GCGTAAGCGACCAGACGGCCAGCGGCGAAGGAGTGAGCGAAGCGAATGGA 711
BPUM_0554___y 1335 -------------------------------------------------- 1335
BSNT_00839 712 TGA 714
BPUM_0554___y 1335 --- 1335
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