Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01089 and BPUM_0547
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:43
# Commandline: needle
# -asequence dna-align/BSNT_01089.1.24716.seq
# -bsequence dna-align/BPUM_0547___yebA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01089-BPUM_0547___yebA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01089-BPUM_0547___yebA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01089
# 2: BPUM_0547___yebA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2506
# Identity: 1461/2506 (58.3%)
# Similarity: 1461/2506 (58.3%)
# Gaps: 593/2506 (23.7%)
# Score: 3835.5
#
#
#=======================================
BSNT_01089 1 ATGC------CGCACGATGATCA----CAAGGGAAGCCG-TTTGAGCTTG 39
|||| ||| |||| || |||||| |||||| |||
BPUM_0547___y 1 ATGCTTCATACGC------ATCAGCGGCA----AAGCCGTTTTGAG-TTG 39
BSNT_01089 40 CTGTTATTTTATTTTCTGGCTTTTTTATTGCTGTGGGAGTGGCTCAGGCC 89
.|..|.|.||||..|.|.||.|||.|..||||.|||||||||||..|.||
BPUM_0547___y 40 TTCATCTATTATGCTGTAGCATTTCTGCTGCTTTGGGAGTGGCTTCGACC 89
BSNT_01089 90 GCTTGACAG-TTTTACTGAAACGAAACATACAGGCTT-TTTTAGTGTCTT 137
||||.| || ||||||.||.||||..||||| |.||| |||.|...|.||
BPUM_0547___y 90 GCTTCA-AGATTTTACAGAGACGAGTCATAC-GTCTTATTTCATCATTTT 137
BSNT_01089 138 TATCGGTTTGACGTTTCTGCTGAC-TTTTTTCAGGATGAGGTGGTTTGTC 186
|||.||..|.||.|.|.||.|.|| ||.|||| |..|||.|||||.|||.
BPUM_0547___y 138 TATAGGGCTTACCTGTTTGTTTACATTCTTTC-GTTTGAAGTGGTATGTG 186
BSNT_01089 187 ACCGTTCCTTTTTG---TGTCAT-ATTTACATTGATCTCGATACACATCC 232
||..|||||.|||| ||.|.| ||| |||.||.|..||.|..|..
BPUM_0547___y 187 ACGTTTCCTATTTGTACTGGCTTGATT----TTGCTCGCCTTATATTTGA 232
BSNT_01089 233 TGTTTTATCAAG--GATCTA---TATTCGACTTGAGCTGGGTCAGCTCTT 277
|.|||||||||| ||.|.| |||.|| |||| || ||
BPUM_0547___y 233 TCTTTTATCAAGCAGAGCCAAGCTATCCG------GCTG---CA----TT 269
BSNT_01089 278 TTTTGC--------AGGATGTCTATCTGAATATCACGCTGAT----TCAA 315
.||||| |.||| ||||||||..|||| .||
BPUM_0547___y 270 ATTTGCTGATATTAAAGAT---------AATATCACCTTGATGAGCACA- 309
BSNT_01089 316 TCTGGGCA-ATGGAATGACATGATTCCTTCATTTCGGACCCTGCTGTTTT 364
|||| .||||.|||||||..|||.||.||.||.||..|..||||||
BPUM_0547___y 310 ----GGCATGTGGAGTGACATGTATCCCTCCTTCCGCACATTATTGTTTT 355
BSNT_01089 365 TTGTGCTGCTGTGGCTGCTGGTCTATCTCCTGCATTATTGGGTGATTTAC 414
.|.|..||||.||||||||.|||||..|.||.||||||||||||.|.||.
BPUM_0547___y 356 ATATTTTGCTATGGCTGCTTGTCTACTTGCTTCATTATTGGGTGGTCTAT 405
BSNT_01089 415 CAG-AGAAGAATTTTGTTTTTCTTTT---TGATGACAGTAGCGTATATTA 460
||| || ..|.|.|||||||||| |.|||||..|.|..|||.|.|
BPUM_0547___y 406 CAGCAG----CGTATCTTTTTCTTTTTACTCATGACGATTGTATATGTCA 451
BSNT_01089 461 CGATTCTTGATACCTTTACGCCATATGATGCCACTTTTGCCGTCATCCGT 510
|||||||.|||||.|||||||||||||||||.||.|||||..||.|.||.
BPUM_0547___y 452 CGATTCTGGATACGTTTACGCCATATGATGCAACCTTTGCGATCGTTCGC 501
BSNT_01089 511 ATCGTGCTGATCGGCTTCTTTATGCTGGGCCTTTTATACTTGGAAC---- 556
||..||.||.|.||.||.|.|.||||.||..|..|.||.||.||.|
BPUM_0547___y 502 ATAATGGTGTTTGGTTTTTGTTTGCTTGGGTTGCTGTATTTCGATCGACT 551
BSNT_01089 557 GCATTAAGCTGATGGAA----AGAATCACA-----CTGCCAAAAACATCT 597
||.||..|||||.||.| .|..||||| | ||
BPUM_0547___y 552 GCGTTCGGCTGAAGGCATTCGGGTGTCACAGAAGGC-GC----------- 589
BSNT_01089 598 GTCCTGAAATGGTTTCTTCCTTTAT-CTG-----TATTGGTTTTGGCTGC 641
|| ||.|||||||||.|.|| .|| ||| |.|| .||.||.|.|.
BPUM_0547___y 590 GT-CTAAAATGGTTTTTGCC--CATGCTGGCGCTTGTT-CTTCTGTCAGT 635
BSNT_01089 642 AACGGTATTCGGACTCGCCGCT------CCAAAATCAGAGCCGGCCTGGC 685
||| |||||..||| |||||.||.||.|||...||||
BPUM_0547___y 636 AAC---------ACTCGGTGCTTCTTTACCAAAGTCTGATCCGAAATGGC 676
BSNT_01089 686 CTGATCCGGTGCCTTTTCTTAAAAAAATCACTCATCAAGACCGCGTGTCT 735
|||||||.||.||.|||.||||.....|.||..|||||||..|| |||
BPUM_0547___y 677 CTGATCCTGTACCGTTTTTTAAGGCGGTGACGAATCAAGATGGC---TCT 723
BSNT_01089 736 GCAGGGGAAAGCAAAA--TCGGATACGGGAATCATGATGAATCACTCGGC 783
|| ||||.||.|.|| |.|||||..|.|...|||||..|||.||.|||
BPUM_0547___y 724 GC--GGGACAGAATAAGGTGGGATATAGTACAGATGATTCATCGCTTGGC 771
BSNT_01089 784 GGCCCGTTCCAG-CAGGATGCTACACCTGTTTTTACATGGCAG-GGAAAA 831
||.||||| .|| .||||....|||||.||.||||.|||| || |||||.
BPUM_0547___y 772 GGACCGTT-TAGTGAGGACCAAACACCGGTCTTTAAATGG-AGCGGAAAG 819
BSNT_01089 832 GAG-CGTACGTATTTCCGTGTGGAAACGAAGGACACGTAT----ACCGGA 876
||| ||| |.||.||.|||||.|||||.|| |.|||| ||.|||
BPUM_0547___y 820 GAGCCGT-CCTACTTTCGTGTCGAAACAAA----AAGTATTTACACAGGA 864
BSNT_01089 877 AAAGGCTG-------GATTGAAACAGACAC--AGGCATGTCGTA-TCAGC 916
|||||||| |.||.||| .||.|| || |.|| ||.||
BPUM_0547___y 865 AAAGGCTGGGAGGATGCTTCAAA-TGATACGAAG------CCTACTCGGC 907
BSNT_01089 917 TTAGCAATGGAAAAGTTGA---------AAATTTGTGGTTT---GACCAT 954
| |||||..|| .|||...|||||| ||.|||
BPUM_0547___y 908 T---------AAAAGAGGACAGTGTACCGAATCGTTGGTTTACCGAGCAT 948
BSNT_01089 955 ----AAGGTTGCGACAGA-GAGC-CGTACCGTCCGTGTAAAAGTCGATAA 998
|| ||||| |||| ||.|.|| |.||||||||.
BPUM_0547___y 949 GTAAAA-------ACAGAGGAGCACGAAACG--------AGAGTCGATAT 983
BSNT_01089 999 GCACTACG-------GGTATAACCAT-CTGATGTATCCGATTGG------ 1034
|.|.| || |.|.|||.||| |.| |.|||||.|||||
BPUM_0547___y 984 GGAAT-CGAATTATCGATTTAATCATGCCG-TCTATCCAATTGGGACGAT 1031
BSNT_01089 1035 --------TGC----GGAAACCATTCAGC--CAAAGCAGGCTGTCTCACT 1070
||| |||.|.|||||.|| ||||.||.|
BPUM_0547___y 1032 CATGCTGATGCCAATGGATAACATTCCGCTGCAAATCATG---------- 1071
BSNT_01089 1071 TGAAATGAACGGCAACACGGAGCAAATT-TCTCCGATCAGTGAACAAGCC 1119
|||||.||||||.||||| || ||| ||..||.|.||.||
BPUM_0547___y 1072 ----------GGCAAAACGGAGAAAATTGTC-CCG-TCTATGCAAAACCC 1109
BSNT_01089 1120 GGTGAAATC-AGAAATATGGGGAATTATACAGTAA-----------CGTA 1157
|.| |.||||.|||||||.|||..|||.| |.||
BPUM_0547___y 1110 ------ACCTAAAAATTTGGGGAACTATCAAGTCAGTTTCTTATCTCCTA 1153
BSNT_01089 1158 CAATTCCCCGGTCTATAAGCTGGATGAACTG-AGAAAGGTAAAAGT---G 1203
|| |.||..|||||.||..|| ||||| .|.||||| |
BPUM_0547___y 1154 CA-----------TTTATCCTGGAGGATTTGCAGAAA-ATCAAAGTACCG 1191
BSNT_01089 1204 AGAAA-AAACA-GTGAGGAGTACACATTCAGC--GATCGC------TACA 1243
|.||| ||.|| ||| |.||||| |.|.|| ||..
BPUM_0547___y 1192 ACAAAGAAGCAGGTG----------AATCAGCAGGTTGGCCGTGAATATT 1231
BSNT_01089 1244 TGCAG----CTTCCAGATTCACTGCCAGAGCGGGTGAGAACCCTTGCGAT 1289
||||| ||||| |||.||||||||||.||||.|||..|.||.|.
BPUM_0547___y 1232 TGCAGCTACCTTCC----TCATTGCCAGAGCGAGTGAAAACATTGGCAAA 1277
BSNT_01089 1290 CA----AACTG--ACTCAGGATCACGACAATATGTTTGATAAGGTGAAAG 1333
|| |||.| ||..||||| |||||||..||.||||..||||
BPUM_0547___y 1278 CAGCTTAACGGAAACGAAGGAT------AATATGTACGACAAGGCTAAAG 1321
BSNT_01089 1334 CGGTTGAGGACTATTTAGGGTCAAATGCG---TTCACATATGAAACAGAA 1380
||.|||||||.||.|||||||| |||| ||..||||||||||..||
BPUM_0547___y 1322 CGATTGAGGATTACTTAGGGTC---TGCGAAATTTTCATATGAAACGCAA 1368
BSNT_01089 1381 AACGTGACCATTCCTAAG-----AATGATGAAGATTATGTCGATCAATTT 1425
||.||..|..|.|| ||| || |||||||||||.|||||||||
BPUM_0547___y 1369 AATGTCGCTGTGCC-AAGTCGTCAA----GAAGATTATGTGGATCAATTT 1413
BSNT_01089 1426 CTCTTTGAAACGAAAATGGGTTATTGTGATAACTTTTCTTCCGCCATGGT 1475
.|.|||||.||||..||.||.||.||||||||.|||||..||.|.|||.|
BPUM_0547___y 1414 TTGTTTGATACGATGATCGGCTACTGTGATAATTTTTCAACCTCGATGAT 1463
BSNT_01089 1476 GGTGCT-CTTGCGCTCGGCCGGCATTCCGGCCCGCTGGGTAAAGGGTTAT 1524
.||||| ||| ||.|||...||.||||||||..|.|||||.||.||.||.
BPUM_0547___y 1464 TGTGCTGCTT-CGTTCGATTGGGATTCCGGCGAGATGGGTGAAAGGCTAC 1512
BSNT_01089 1525 ACGTCCGGCGAAT--------ACAAAGAAGCA-GGAAACAAAAATGGCAG 1565
|||||.||..||| |||.|||.|.| |||||| ||||
BPUM_0547___y 1513 ACGTCAGGTCAATTATATGAAACACAGATGGATGGAAAC---AATG---- 1555
BSNT_01089 1566 CATCTACGAAGTGACAAATAACAATGCCCATTCCTGGGTAGAGGTGTATT 1615
|.|||||||||||.|||||||||||.|||||.||||||||.|||||||
BPUM_0547___y 1556 --TGTACGAAGTGACCAATAACAATGCGCATTCATGGGTAGAAGTGTATT 1603
BSNT_01089 1616 TCCCGGAACAG-GGCTGGGTTACATTTGAGCCGACTAAAGGGTTTACAAA 1664
|.|| .||||| ||||||||.||.|||||.|||||.|||||.|||||.||
BPUM_0547___y 1604 TTCC-AAACAGAGGCTGGGTGACCTTTGAACCGACAAAAGGCTTTACGAA 1652
BSNT_01089 1665 TCCGG------------CTGAATTTACTTCTTCTGA-------------- 1688
.||.| .|||||...||||...|||
BPUM_0547___y 1653 CCCAGAGACCTTTACAAATGAATCGGCTTCAAGTGATCAAACTGATGATG 1702
BSNT_01089 1689 --CACAAAGGA-----CTCCGGC-AGC---GATAAAAGC--AGCTC-GCC 1724
|| |||||| .||.|.| ||| |||..|||| ||.|| |||
BPUM_0547___y 1703 ATCA-AAAGGAAGAAGATCAGCCTAGCTCTGATGCAAGCGAAGATCAGCC 1751
BSNT_01089 1725 GAAGAAAGCAAAAGAGAAACAGAAAGAAGAGAAAAAACAGCCG---CAA- 1770
|| ||.||.||...|||.|..||||||.|..||||||| .||
BPUM_0547___y 1752 GA------CAGAACAGCCGCAGCAGCAAGAGACAGCACAGCCGGCTGAAC 1795
BSNT_01089 1771 -AAAGAGGAAAAACAAA-AGGAAAAGCGGGAGCCAGCTGTTTCTAAAAAG 1818
|||| ||||||| ||...||||| |||
BPUM_0547___y 1796 CAAAG-----AAACAAACAGCGCAAGCG-------------------AAG 1821
BSNT_01089 1819 CCGTCCGCTTCGCATACTAATGCCGGTGCGGGCTTGTATGCAGCGCTTGC 1868
| ||||| ..|||||..| |||.||..| .||||
BPUM_0547___y 1822 C---------------CTAAT-ATGGTGCAAG-TTGGATCAA--TCTTG- 1851
BSNT_01089 1869 GGTTCTTGCAG------------TCCT------CTTGGTGGCAGCTGTAT 1900
|||| ||||.| |||| ||||.| .|||||.|
BPUM_0547___y 1852 GGTT-TTGCGGCAGGAGCTATGATCCTTCTAGGCTTGAT--AAGCTGGA- 1897
BSNT_01089 1901 TGCTGTATGTTTTCCGCTCGTTATGGATTCCTGTTTTCACCGTGAGGAAA 1950
||||.|||...|||.|..|...||||.|.|||.|.||.|..|||||.||
BPUM_0547___y 1898 TGCTTTATCGATTCAGAGCAAGATGGCTGCCTTTCTTTATTGTGAGAAA- 1946
BSNT_01089 1951 TTGAAGCGGCGCAACGATC---------AGCACGCGTTTTTTGAGGCATA 1991
||||.|||| || ||.|.|..||.||..|.|||||
BPUM_0547___y 1947 -------GGCGAAACG-TCTGCCAGAGGAGGAAGTATTCTTCTATGCATA 1988
BSNT_01089 1992 TGACGCGCTTCTGAAACAACTGAA-------------GAGAAAAGGGCTG 2028
||..|||||..|.||.||.||||| ||||||
BPUM_0547___y 1989 TGCTGCGCTATTAAAGCAGCTGAAGCGCAGGGGAATTGAGAAA------- 2031
BSNT_01089 2029 CCGAAACGAGGCAGTGAAACGCTGCGTGA------TTATGCAAAACGAAT 2072
||||..|||| || |||||..|.|| ||.| |
BPUM_0547___y 2032 ---AAACCTGGCA-TG--ACGCTAAGAGAGTTCGCTTCT----------T 2065
BSNT_01089 2073 TGAT-GAAAAATACGACATAGA---AGA------CATGTCAAAGCTGACA 2112
|||| | |.||||.||| ||| .|||.||.|||||||.
BPUM_0547___y 2066 TGATCG------ATGACAAAGATGGAGATCATCTGATGACAGAGCTGACG 2109
BSNT_01089 2113 TTAAGCTATGAAAGGGCGCTTTACAGAAATGAAGATTCTTCGGCGCTATG 2162
..|..||||||..||||.||.||..||...||.|||.|.|||..|||.||
BPUM_0547___y 2110 CAACTCTATGAGCGGGCACTCTATCGACGAGAGGATGCGTCGATGCTTTG 2159
BSNT_01089 2163 G----AATGATTCGAGAGAGTTATGGGAAAATTTAATTAAAAGAAGATGG 2208
| || |||..|.|||||||||||||||||||.||.||.||||.|
BPUM_0547___y 2160 GGGGCAA----TCGGCAAAGTTATGGGAAAATTTAATAAACAGGAGATAG 2205
BSNT_01089 2209 TCTTGA 2214
BPUM_0547___y 2205 ------ 2205
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