Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01083 and BPUM_0543
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:42
# Commandline: needle
# -asequence dna-align/BSNT_01083___gabP.1.24716.seq
# -bsequence dna-align/BPUM_0543___gabP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01083___gabP-BPUM_0543___gabP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01083___gabP-BPUM_0543___gabP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01083___gabP
# 2: BPUM_0543___gabP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1469
# Identity: 1003/1469 (68.3%)
# Similarity: 1003/1469 (68.3%)
# Gaps: 121/1469 ( 8.2%)
# Score: 3308.0
#
#
#=======================================
BSNT_01083___ 1 ---------------------------ATGAACCAGTCTCAATCAGGATT 23
|||| |||.|.|..||
BPUM_0543___g 1 ATGTTTGGAGGTAAAGACATGTCCAACATGA--------CAAACGGTCTT 42
BSNT_01083___ 24 AAAAAAGGAA--TTAAAGACCCGCCATATGACAATGATTTCGATTGCCGG 71
.||||| || ||||| ||..|.|||||..|.|||||.||.||||||||
BPUM_0543___g 43 CAAAAA--AATCTTAAA-ACAAGACATATTTCCATGATCTCCATTGCCGG 89
BSNT_01083___ 72 TGTAATCGGAGCCGGCCTGTTTGTAGGCAGCGGTTCAGTGATTCACTCGA 121
.||.||.||.||.||.||.|||||.||.|||||..|.||.|||||.||..
BPUM_0543___g 90 AGTTATTGGCGCAGGGCTATTTGTTGGTAGCGGCGCTGTCATTCATTCTG 139
BSNT_01083___ 122 CCGGTCCGGGTGCCGTTGTTTCTTACGCGTTAGCCGGATTATTGGTGATT 171
|.||.||.||..||.||.||||.||..|.||.||||||.|..|.||.||.
BPUM_0543___g 140 CAGGGCCTGGATCCATTCTTTCATATTCTTTTGCCGGACTTCTCGTAATC 189
BSNT_01083___ 172 TTTATTATGAGAATGCTCGGTGAGATG---TCTGCCGTAAACCCGACGAG 218
|||||||||||||||||.||.||.||| |.|||| .|.|||||.||
BPUM_0543___g 190 TTTATTATGAGAATGCTTGGAGAAATGGCATGTGCC---TATCCGACAAG 236
BSNT_01083___ 219 CGGATCGTTTTCTCAATACGCTCACGACGCCATCGGACCGTGGGCGGGAT 268
|||.||.||.||.|||||.||...|||.||||||||.||.|||||.||.|
BPUM_0543___g 237 CGGTTCCTTCTCACAATATGCGAGCGATGCCATCGGTCCATGGGCCGGTT 286
BSNT_01083___ 269 TTACAATCGGCTGGCTGTACTGGTTTTTCTGGGTGATCGTCATAGCGATC 318
|||||||.||||||||.||.|||||.|||||||||||.||.||.||.|||
BPUM_0543___g 287 TTACAATTGGCTGGCTTTATTGGTTCTTCTGGGTGATTGTTATCGCCATC 336
BSNT_01083___ 319 GAAGCCATTGCCGGTGCTGGCATTATTCAATACTGGTTCCAT-GATATTC 367
|||||||||||||||||||.|||||||||.||.|||| || ||.||.|
BPUM_0543___g 337 GAAGCCATTGCCGGTGCTGCCATTATTCAGTATTGGT---ATGGAGATGC 383
BSNT_01083___ 368 CGCTG--TGGCTGACAAGTTTGATCTTGACCATTGTGCTCACCCTGACAA 415
..||| |||||.||||||.|.|||.|.||.||..|..|.||..|.||||
BPUM_0543___g 384 ACCTGTTTGGCTCACAAGTCTTATCCTCACTATCCTCTTAACATTAACAA 433
BSNT_01083___ 416 ACGTCTACTCCGTTAAGTCTTTCGGTGAGTTTGAATATTGGTTCTCCCTC 465
|..|||..||.|||||.|||||.||.||.|||||||||||||||||..|.
BPUM_0543___g 434 ATATCTTTTCTGTTAAATCTTTTGGCGAATTTGAATATTGGTTCTCATTA 483
BSNT_01083___ 466 ATTAAAGTTGTGACTATCATTGCT-TTTCTAATCGTTGGTTTCGCCTTTA 514
||.|||||.||.|..|||||| || ||.|||.||.|.|||||.||.||||
BPUM_0543___g 484 ATCAAAGTCGTCAGCATCATT-CTATTCCTACTCATCGGTTTTGCATTTA 532
BSNT_01083___ 515 TTTTTGGCTTTGCACCGGGCAGTGAGCCA-------GTCGGTTTTTCGAA 557
|.|||||.|||| ||| |.|| ||.|||.||.|.||
BPUM_0543___g 533 TCTTTGGTTTTG---------GTG-GTCATCATACTGTAGGTCTTGCCAA 572
BSNT_01083___ 558 TCTTACAGGCAAAGGCGGATTTTTCCCGGAGGGCATCAGCTCCGTATTGC 607
|.|.|||||.||.|||||.||..|.||..|.||..|||||||.||.||.|
BPUM_0543___g 573 TTTAACAGGGAACGGCGGTTTCCTTCCAAATGGATTCAGCTCTGTTTTAC 622
BSNT_01083___ 608 TCGGCATTGTCGTTGTCATCTTCTCTTTTATGGGAACTGAAATCGTTGCC 657
||||.||||||||.||||||||.||.||.||||||||.||.||.||.||.
BPUM_0543___g 623 TCGGAATTGTCGTCGTCATCTTTTCCTTCATGGGAACCGAGATTGTGGCA 672
BSNT_01083___ 658 ATTGCAGCAGGGGAAACATCCAACCCGATCGAATCTGTGACAAAAGCCAC 707
||.||.||.||.|||.||.|..|||||.||.|.||||||||||.|||.||
BPUM_0543___g 673 ATAGCGGCCGGAGAATCAGCAGACCCGGTCAAGTCTGTGACAACAGCTAC 722
BSNT_01083___ 708 CAGATCCGTTGTATGGCGCATCATCGTCTTTTACGTGGGCTCAATCGCCA 757
|.|.||.|||||||||||.||||||||.|||||.||.||.||.|||||..
BPUM_0543___g 723 CCGCTCTGTTGTATGGCGTATCATCGTGTTTTATGTCGGTTCTATCGCTG 772
BSNT_01083___ 758 TTGTCGTGGCGCTGTTGCCATGGAATTCAGCAAATATTTTAGAAAGCCCT 807
|.||.|||.|..||.|.||.|||||||||||.|.|||||||..|||.||.
BPUM_0543___g 773 TCGTTGTGACCTTGCTTCCGTGGAATTCAGCGAGTATTTTAACAAGTCCG 822
BSNT_01083___ 808 TTCGTCGCTGTACTTGAGCATATAGGAGTGCCGGCAGCCGCACAGATTAT 857
|||||.||.|||.|.||..|.||.||.||.||..||||.||.||..|.||
BPUM_0543___g 823 TTCGTTGCGGTATTAGAATACATCGGCGTCCCATCAGCAGCTCAAGTCAT 872
BSNT_01083___ 858 GAACTTTATCGTCCTCACAGCCGTACTCTCTTGCCTGAATTCAGGTTTAT 907
||||.|.||.||..|.||||||||.||.||||||.|.||.||.||.||||
BPUM_0543___g 873 GAACGTCATTGTTTTAACAGCCGTTCTTTCTTGCTTAAACTCCGGATTAT 922
BSNT_01083___ 908 ACACCACATCCAGAATGCTGTATTCACTTGCAGAAAGAAACGAAGCGCCG 957
|||||||.|||||||||||.||||||.|.|||||||||..||||||.|||
BPUM_0543___g 923 ACACCACCTCCAGAATGCTTTATTCATTGGCAGAAAGAGGCGAAGCACCG 972
BSNT_01083___ 958 CGCCGTTTTATGAAATTGAGCAAAAAAGGCGTTCCCGTACAAGCCATTGT 1007
...||.|||||||||.|.||||||...||||||||.|||...||.|..||
BPUM_0543___g 973 AAACGCTTTATGAAAATCAGCAAACGTGGCGTTCCTGTAGCTGCTACAGT 1022
BSNT_01083___ 1008 GGCCGGGACATTTTTCTCTTATATCGCGGTCGTAATGAACTATTTTTCAC 1057
.||.||.||.||.||.|||||.||.||.|||.|.||||||||.||||..|
BPUM_0543___g 1023 TGCTGGCACCTTCTTTTCTTACATTGCCGTCATGATGAACTACTTTTATC 1072
BSNT_01083___ 1058 CGGATACCGTCTTTTTATTCTTAGTCAACTCATCAGGCGCAATCGCTTTA 1107
|.||.|||.|||||||.|||||||||||..||||.||.||.||.||..|.
BPUM_0543___g 1073 CTGAAACCATCTTTTTGTTCTTAGTCAATGCATCCGGTGCGATTGCCCTT 1122
BSNT_01083___ 1108 CTCGTCTATCTT-GTCATCGCAGTTTCCCAGCTGAAAATGCG--GAAAAA 1154
||.||||| ||| |||||.||.||.||.||..|.|.|||||| |.||||
BPUM_0543___g 1123 CTTGTCTA-CTTGGTCATTGCTGTGTCACAATTAAGAATGCGTCGTAAAA 1171
BSNT_01083___ 1155 ACTCGAAAAAACAAACCCGGA--AGCATTGAAGATCAAAATGTGGCTCTT 1202
||||||||..|||.||.|| ||| |.||.||||||||||||||.||
BPUM_0543___g 1172 --TCGAAAAAGAAAATCCAGAACAGC--TCAAAATCAAAATGTGGCTGTT 1217
BSNT_01083___ 1203 CCCTTTCCTAACCTACTTGACCATCCTCGCCATTTGCGGAATTTTAGTGT 1252
|||.|..||.||.|||||.|||||..|.|..|||||||..||.||..|.|
BPUM_0543___g 1218 CCCATATCTCACGTACTTTACCATTTTGGTTATTTGCGCCATCTTGATAT 1267
BSNT_01083___ 1253 CCATGGCGTTTATTGATTCCATGAGAGACG-AGCTGCTGCTGACAGGCGT 1301
|.|||..||||||.||.||.|||||| .|| ||||..|..||||..|..|
BPUM_0543___g 1268 CGATGCTGTTTATCGAATCAATGAGA-CCGCAGCTCATTTTGACGAGTAT 1316
BSNT_01083___ 1302 CATCACGGGAATCGTTCTGATTTCTTAC--CTTGTGTTCA---GAAAACG 1346
|||.| |.|||.|..|.|||.| |||.| |||| ..||||.
BPUM_0543___g 1317 CATTA-------CCTTCAGTGTGCTTGCCGCTTAT-TTCATCTTTAAACC 1358
BSNT_01083___ 1347 CAAGGTGAGCGAGAAAGCGGCTGC-----CAACCCAGTTACACAGCAGCA 1391
.|| ..|.|||||..|||| ||||.| ||..|.|..|.||
BPUM_0543___g 1359 AAA------TAAAAAAGCACCTGCAAATGCAACGC--TTGAAAATAAACA 1400
BSNT_01083___ 1392 GCCCGATATCCTGCCTTAA 1410
.|| |||.
BPUM_0543___g 1401 TCC--ATAA---------- 1407
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