Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01073 and BPUM_0540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:42
# Commandline: needle
# -asequence dna-align/BSNT_01073___ydjN.1.24716.seq
# -bsequence dna-align/BPUM_0540___ydjN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01073___ydjN-BPUM_0540___ydjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01073___ydjN-BPUM_0540___ydjN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01073___ydjN
# 2: BPUM_0540___ydjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 650/1232 (52.8%)
# Similarity: 650/1232 (52.8%)
# Gaps: 367/1232 (29.8%)
# Score: 1494.0
#
#
#=======================================
BSNT_01073___ 1 ATGAAAAAAAGAATCATATT--ATTATTAGCAGTGATAATAGCGGCAGCT 48
|||||||||..|| |||..| ||.||.| ||||.|| ||| .
BPUM_0540___y 1 ATGAAAAAATCAA-CATGGTGGATCATCA-CAGTCAT-----CGG----A 39
BSNT_01073___ 49 GCCGCGGGGGTTGCG--------------TTTTATGTTGCAAAGGATAAA 84
|.|||.|.|.||||| |||.|||..||...||..|.|
BPUM_0540___y 40 GTCGCAGTGATTGCGGCCGTCATCTTCTTTTTAATGAAGCCGGGGCAAGA 89
BSNT_01073___ 85 GGCCATGAGAAGGCTGCTG---ATGTTTCAGTCAATACCGAAAGCGGTGA 131
||| ||||..|||.| | |||.||.|| |||.|.| ||
BPUM_0540___y 90 GGC-----GAAGCATGCGGGAAA------AGTGAAAAC--AAATCAG-GA 125
BSNT_01073___ 132 T---------GAGCTGCTGGTTTCAATTACAGAT--ACGGATCTGCTGAC 170
| ||..|.||.||||||.|||||||| ||.|.|
BPUM_0540___y 126 TGCAAAAGACGAATTACTCGTTTCATTTACAGATCAACAGTT-------- 167
BSNT_01073___ 171 AAA------GTATTATGAAAATGACAAGGTGATCCATGAGGAGAAGCTGA 214
||| |||||||....||||...||.|.|.|||...|||||.||||
BPUM_0540___y 168 AAACAATACGTATTATCTGCATGATCGGGCGCTTCATACAGAGAAACTGA 217
BSNT_01073___ 215 CCAGCTATCCGGCATTTGCCT-TGGATCAA--AAACAGCAGGTGCTCTAT 261
||..||||||..|..||||.| ||..||.| ||||||| |..|.|||
BPUM_0540___y 218 CCGCCTATCCTTCGATTGCTTATGATTCTACGAAACAGC---TTTTATAT 264
BSNT_01073___ 262 TATACGGGCAATAATGAACA---GAATGAAATGAGGCTTTTTAAACTGGA 308
||.|||..||...|||||.| |.|..||.||||..||....|||||.|
BPUM_0540___y 265 TACACGTACACGGATGAAGACACGCAAAAAGTGAGTATTCGAGAACTGAA 314
BSNT_01073___ 309 TCTAAAGTCTAATA-------AAAAGACGGTGCTTTATA----------- 340
|.|||| ||.| ||||.|| |||||.||
BPUM_0540___y 315 TGTAAA----AAAAGATGAAGAAAAAAC---GCTTTTTACGAGTCATGAT 357
BSNT_01073___ 341 --------------AAGGC---GCGGAGAGTGCGG---ACAGTT-TGTTT 369
.|||| ..||||| ||| |||||| |.|.|
BPUM_0540___y 358 TCCATCGACAGTATGAGGCTGTCTGGAGA---CGGGAAACAGTTATATCT 404
BSNT_01073___ 370 T---TATCA-AAGGACCGTTCAACCATCTATTTCCGCTTAGGAAAATCGG 415
| |||.| ||||| ||||| ||.||
BPUM_0540___y 405 TAGATATAATAAGGA----------------TTCCG----GGGAA----- 429
BSNT_01073___ 416 ACGAAAGCAATTTTCGGATCGCCGCT---TTTGATCTGAAGAC-GAAAAA 461
||||||| || |.|||| ||||||.|.||.|| .|.|||
BPUM_0540___y 430 -------CAATTTT---AT-GTCGCTATGTTTGATGTCAACACACACAAA 468
BSNT_01073___ 462 GTATAAAAATCTT-TATCCTGCCGCTAATGA----TCAGGATGACACCGT 506
| |.||..|.|| ||||| |..|| |.||||||||||.||
BPUM_0540___y 469 G--TGAAGGTATTGTATCC-------AGAGAAAAGTAAGGATGACACGGT 509
BSNT_01073___ 507 CAGCAGCTTCTT----TTATAA-------CCAAAAAAACGATTCATTT-G 544
.|| ||||| ||||.| .|||| |||||| |
BPUM_0540___y 510 AAG----TTCTTTTGCTTATGATCCGGCGTCAAA--------TCATTTGG 547
BSNT_01073___ 545 CATTGCTTCATTATTCTGTAGAAGAAGACTACAAGAAAACAGATGAAGCA 594
||.|.|..||||||||..||.|||||||.|||||||||||.||||||||.
BPUM_0540___y 548 CAATCCAGCATTATTCCTTAAAAGAAGATTACAAGAAAACCGATGAAGCG 597
BSNT_01073___ 595 AACGAAAAGGGCATCGACCCTGAACCGACAACGATTCATTTTGCGGAAG- 643
||.||||||||.|..|||||||||||.||.||.|| ||||
BPUM_0540___y 598 AATGAAAAGGGAAGAGACCCTGAACCAACGACCAT----------GAAGA 637
BSNT_01073___ 644 ---GCCGTCA-ACATAAATTTAATGAGCTGA----AAAGC---CTGAAC- 681
.||.||| || |.|.|| || ||||| .||.||
BPUM_0540___y 638 TCACCCTTCAGAC---------AGGCGC-GAAGGGAAAGCAAATTGCACG 677
BSNT_01073___ 682 -------CAATTTATCAGCGATATTGCTGTTTCTGATGATGATAAACGTA 724
|||...||||..||||||.|..||||....|||.||||
BPUM_0540___y 678 CATCTCACAAACGATCAATGATATTTCATTTTCACCAGATCATAA----- 722
BSNT_01073___ 725 TTTTATTCACA-TCATATACGCAGAAAGGAACGGAGCAAACCG------- 766
.||| |.|||||..|||||..||| ||.||.||..|
BPUM_0540___y 723 -------GACATTGATATATACAGAAGTGAA-GGTGCGAAAAGAAAAAGA 764
BSNT_01073___ 767 -----CTTCTATTCAGATGCTCAATGCGGATAC--GAAAAAGTATGAAAG 809
|..||||..|.|||||..|||..||.|| ||||||..|.||.|
BPUM_0540___y 765 AGTATCCACTATAAAAATGCTTGATGTAGAAACGGGAAAAACGACGACA- 813
BSNT_01073___ 810 CATCATCTCAAATCAAAAATCATTTAAGCTG--------TTAATTGACGC 851
||| .|.||.||| |.|.|.|.|| ||||.||.|||
BPUM_0540___y 814 ------CTC--GTTAAGAAT-AGTAAGGATGTGCATATTTTAAGTGCCGC 854
BSNT_01073___ 852 ACAGCCTCAGTTTTCTAAGGATGGGAAGAAC----ATTTATTTTCTTGCC 897
||||||.||.|||||||.||||| ||.| .|||| ||||||
BPUM_0540___y 855 ACAGCCGCAATTTTCTACGGATG----GATCTTCTGTTTA-TTTCTT--- 896
BSNT_01073___ 898 GAAGCCAAGGGG--GCTAAAAA-GC--------TGAAGGACGAAACAGGG 936
|||.| |||||||| || |.|||||.||.||.||.
BPUM_0540___y 897 -------AGGTGTTGCTAAAAACGCAAAAGAATTAAAGGATGACACCGGT 939
BSNT_01073___ 937 CGTGAAGCTAAGGTGCGGACGATTTATTCCTATAGCCTTGAA------AA 980
||..||||.|||||..|.||.||.| ||||| |.
BPUM_0540___y 940 CGAAAAGCAAAGGTAAGAACAATAT------------TTGAATACAATAT 977
BSNT_01073___ 981 TAAGACCTTCAAAAAAGT---------ATGGGAAAATCCGAA------CG 1015
||||| ..||||.||| .||||| ||| ||
BPUM_0540___y 978 TAAGA---AGAAAACAGTGGATGCCGCTTGGGA------GAAAGATGGCG 1018
BSNT_01073___ 1016 GCATCATCAACAGCTTTTCTGTGATTAACTAA 1047
|.||..|.||.|..||..||||.|.|...|||
BPUM_0540___y 1019 GGATTGTTAATAATTTCACTGTCAATCGATAA 1050
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