Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01072 and BPUM_0539
See
Amino acid alignment /
Visit
BSNT_01072 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:41
# Commandline: needle
# -asequence dna-align/BSNT_01072___ydjM.1.24716.seq
# -bsequence dna-align/BPUM_0539___ydjM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01072___ydjM-BPUM_0539___ydjM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01072___ydjM-BPUM_0539___ydjM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01072___ydjM
# 2: BPUM_0539___ydjM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 387
# Identity: 270/387 (69.8%)
# Similarity: 270/387 (69.8%)
# Gaps: 33/387 ( 8.5%)
# Score: 904.0
#
#
#=======================================
BSNT_01072___ 1 ATGTTGAAGAAAGTCATTTTAGC----CGCTTTTATCTT---AGTAGGAA 43
.||||.||| .||| |||....|||.| |||||..|
BPUM_0539___y 1 ---ATGAATAAA-------AAGCTTATCGCGACAATCGTAACAGTAGCTA 40
BSNT_01072___ 44 G--TACTTTGGGAGCTTTTAGTTTTTCATCA--GATGCCAGTGCGAAACA 89
| ||.|||.| ||.||||||||.||| || || ||.|||||.|||.|
BPUM_0539___y 41 GTTTATTTTTG--GCGTTTAGTTTCTCA-CATGGA-GCAAGTGCAAAAAA 86
BSNT_01072___ 90 TGTGAACGGAAATATTACTTGGTATAACGGAGTCGGGAAAAAAGGCTCTT 139
.||.|.|||.|||||||||||||||||.||.|||||.|||||||||.|..
BPUM_0539___y 87 AGTAAGCGGCAATATTACTTGGTATAATGGTGTCGGTAAAAAAGGCGCAG 136
BSNT_01072___ 140 CAGGTAAGAAACTTGGACATTGGGATTGTGCGACCAAAATCGGATTTGAT 189
..||.||.|||||.||.|||||||||...||.||.|||||.||||||||.
BPUM_0539___y 137 ATGGAAAAAAACTCGGTCATTGGGATGCAGCAACTAAAATGGGATTTGAC 186
BSNT_01072___ 190 GTTCCTAGAAACGGGACAAAAATCAGAGCTTATG----CAAAAGCGAAGC 235
||.||.|.|||.||.||||||.|.|||| || ||||||||||.|
BPUM_0539___y 187 GTACCGAAAAAAGGTACAAAACTAAGAG----TGACAACAAAAGCGAAAC 232
BSNT_01072___ 236 CTAAAAAGGTGATTACGGTTTATAAAAATGATGTTGGCAGAATGCCTAAT 285
|..|.||.||||||||.||.||||||.|||||||.||.||||||||.||.
BPUM_0539___y 233 CACATAAAGTGATTACAGTATATAAATATGATGTAGGTAGAATGCCAAAC 282
BSNT_01072___ 286 GCAGTGCTGGATGTTAGCCCTAAAGCGTTTAAAGCGCTTGGATACCCATT 335
||.||..|.|||||.|||||.|||||.||.|||||.||.||.||...|..
BPUM_0539___y 283 GCTGTATTAGATGTCAGCCCAAAAGCATTCAAAGCACTAGGGTATAAAAC 332
BSNT_01072___ 336 AAGCAAAGGTAAAGTAGCGGGGCATTACAGCTATTAA 372
|||.||||||...|||...||||||||||..||||||
BPUM_0539___y 333 AAGTAAAGGTGTCGTAAAAGGGCATTACACTTATTAA 369
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.