Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01036 and BPUM_0525
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_01036___gcp.1.24716.seq
# -bsequence dna-align/BPUM_0525___gcp.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01036___gcp-BPUM_0525___gcp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01036___gcp-BPUM_0525___gcp.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01036___gcp
# 2: BPUM_0525___gcp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1085
# Identity: 760/1085 (70.0%)
# Similarity: 760/1085 (70.0%)
# Gaps: 100/1085 ( 9.2%)
# Score: 2574.5
#
#
#=======================================
BSNT_01036___ 1 ATGAGTGAGCAAAAAGACATGTACGTATTAGGAATTGAAACAAGCTGTGA 50
||||||||.||||.|||....|.|.|||||||.||.||.|||||||||||
BPUM_0525___g 1 ATGAGTGAACAAACAGATCGATTCATATTAGGTATAGAGACAAGCTGTGA 50
BSNT_01036___ 51 TGAGACTGCTGCAGCTATTGTGAAAAACGGGAAAGAGATCATTTCAAACG 100
.||.||.||||||.|||||||||||||.||||||||.||..|..|.||.|
BPUM_0525___g 51 CGAAACAGCTGCATCTATTGTGAAAAATGGGAAAGAAATTGTAGCGAATG 100
BSNT_01036___ 101 TAGTAGCCTCTCAAATTGAAAGCCATAAGCGCTTCGGAGGCGTTGTTCCG 150
||||.||.||.|||||.|||||||||||.||.||.||.||.|||||.||.
BPUM_0525___g 101 TAGTCGCGTCGCAAATAGAAAGCCATAAACGATTTGGCGGTGTTGTCCCA 150
BSNT_01036___ 151 GAAATTGCTTCAAGACATCATGTTGAACAAATCACTTTGGTTATAGAAGA 200
|||||.||||||||.||||||||.||.|||.|.|||.|.||..|||||||
BPUM_0525___g 151 GAAATCGCTTCAAGGCATCATGTGGAGCAAGTTACTATCGTGTTAGAAGA 200
BSNT_01036___ 201 GGCG-TTTCGCAAAGCTGGC----ATGACGTATAGTGATATTGATGCGAT 245
.|.| |..|.|| ||| ||||..|.|...|||.|.|||||.||
BPUM_0525___g 201 AGTGATGACACA-----GGCCAATATGAGCTTTCAAGATTTAGATGCCAT 245
BSNT_01036___ 246 TGCAGTAACAGAAGGTCCGGGACTGGTGGGGGCGCTTCTTATTGGAGTGA 295
|||.||.||||||||.||.||..|.||.||.||.|||||.|||||.||.|
BPUM_0525___g 246 TGCTGTCACAGAAGGACCAGGCTTAGTTGGCGCCCTTCTGATTGGTGTCA 295
BSNT_01036___ 296 ATGCCGCTAAAGCATTGAGCTTTGCACATAACATTCCGTTAGTAGGCGTT 345
||||.||.||.|||.||||||||||.|||.|.|||||..|.||.||.||.
BPUM_0525___g 296 ATGCAGCCAAGGCACTGAGCTTTGCCCATCAAATTCCTCTTGTTGGTGTA 345
BSNT_01036___ 346 CATCATATAGCCGGTCATATATACGCGAACCGTCTTGTAGAAG----ACA 391
||||||||.||.||.|||||.||.||.||.|..||||||||.| |||
BPUM_0525___g 346 CATCATATTGCAGGGCATATTTATGCAAATCAACTTGTAGATGAATTACA 395
BSNT_01036___ 392 TCGTGTTCCCGGCACTGGCATTGGTCGTTTCAGGAGGCCATACAGAACTG 441
|| ||||..|| .||||..|.||.|||||.|||||.|||||.|||||.
BPUM_0525___g 396 --GT-TTCCATGC-TTGGCTCTTGTTGTTTCTGGAGGACATACTGAACTT 441
BSNT_01036___ 442 GT-TTATATGAAGGAACATGGATCATTTGAAGTCATTGGGGAAACCCTTG 490
|| .|| |||||.||.||.|||||||||||.||.||.||.|||||..|.|
BPUM_0525___g 442 GTACTA-ATGAAAGAGCACGGATCATTTGAGGTGATCGGAGAAACATTAG 490
BSNT_01036___ 491 ATGATGCGGCAGGAGAAGCCTACGACAAAGTGGCGCGGACGATGGGATTG 540
||||||||||.||||||||.|||||.||||||||.|||||||||||..|.
BPUM_0525___g 491 ATGATGCGGCTGGAGAAGCTTACGATAAAGTGGCCCGGACGATGGGTCTT 540
BSNT_01036___ 541 CCATATCCGGGTGGACCGCAAATTGACAAGCTAGC---TGAAAAAGGGAA 587
||.|||||.||.|||||.||.|||||...|.|||| |||| |||.
BPUM_0525___g 541 CCGTATCCAGGCGGACCTCATATTGATCGGTTAGCACATGAA----GGAG 586
BSNT_01036___ 588 TGACAA-TATTCCGCTTCCTCGCGCATGGCTTGAAGAAGGCTCTTACAAC 636
.|.||| .|||..||||||.||.|||||||||||||||||||||||..||
BPUM_0525___g 587 AGCCAACGATTAAGCTTCCACGAGCATGGCTTGAAGAAGGCTCTTATCAC 636
BSNT_01036___ 637 TTCAGCTTTAGCGGATTGAAGTCTGCGGTGATCAATACGCTTCATAATGC 686
||.||||||||.|||||.||.||.||.||.||.||.||.||.||.|||||
BPUM_0525___g 637 TTTAGCTTTAGTGGATTAAAATCAGCTGTTATTAACACACTACACAATGC 686
BSNT_01036___ 687 ATCCCAAAAAG-GGCAAGAGATTGCTCCGGAAGATTTGTCTGCCAGTTTC 735
.||.||||||| .|.||.| ||||||||.||..|||||.|.||.|||||.
BPUM_0525___g 687 CTCTCAAAAAGATGAAATA-ATTGCTCCAGAGAATTTGGCAGCAAGTTTT 735
BSNT_01036___ 736 CAAAATAGTGTGATCGATGT-CTTGGT-----AAC--CAAAACGGCGCGC 777
|||...|||||.||.||.|| ||||.| ||| .||||
BPUM_0525___g 736 CAAGCAAGTGTCATTGAAGTACTTGTTGGAAAAACATTAAAA-------- 777
BSNT_01036___ 778 GCGGCAAAGGAATATGATGTCAAACAGGTCCTTTTAGCCGGAGGAGTAGC 827
||||||.|||..||||..|||||.|||||..|..||||.||.||.||.||
BPUM_0525___g 778 GCGGCAGAGGCCTATGGCGTCAAGCAGGTTGTCCTAGCTGGTGGCGTCGC 827
BSNT_01036___ 828 TGCAAACAGAGGCCTCAGAGCTGCATTAGAAAAGGAATTTGCCCAGCATG 877
|||.||.|.|||.||.||||..||.|||..|| ||||||
BPUM_0525___g 828 TGCCAATAAAGGTCTGAGAGAAGCCTTAACAA-----------CAGCAT- 865
BSNT_01036___ 878 AAGGGATTAC---GCTT------------GTCA---TTCCTCCATTAGCT 909
|.|| |||| |||| |||||||.|||.||
BPUM_0525___g 866 ------TCACAAAGCTTCCTGACGTAAAGGTCATTGTTCCTCCGTTATCT 909
BSNT_01036___ 910 TTATGCACGGATAATGCTGCGATGATTGCTGCTGCTGGTACAATTGCTTT 959
.|.|||||.||.|||||.||.|||||.|||||||||||.||.|||||.||
BPUM_0525___g 910 CTTTGCACAGACAATGCAGCCATGATCGCTGCTGCTGGAACCATTGCGTT 959
BSNT_01036___ 960 TGAAAAAGGAATTCGCGGTGCATAT-GATATGAATGGCCAGCCCGGCCTT 1008
|||.|.||||||..|.||.| |||| |..||||||||||||||.|||
BPUM_0525___g 960 TGAGAGAGGAATAAGAGGCG-ATATGGCGATGAATGGCCAGCCGGGC--- 1005
BSNT_01036___ 1009 GAATTGACTTCTTATCAAAGTCTC--ACGAGATAA 1041
|.||..||| ||||| |.|| ||.|
BPUM_0525___g 1006 ----TTACCACTT------GTCTCATATGA-ATGA 1029
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