Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01035 and BPUM_0524

See Amino acid alignment / Visit BSNT_01035 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:40
# Commandline: needle
#    -asequence dna-align/BSNT_01035___ydiD.1.24716.seq
#    -bsequence dna-align/BPUM_0524___rimI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01035___ydiD-BPUM_0524___rimI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01035___ydiD-BPUM_0524___rimI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01035___ydiD
# 2: BPUM_0524___rimI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 500
# Identity:     325/500 (65.0%)
# Similarity:   325/500 (65.0%)
# Gaps:          73/500 (14.6%)
# Score: 921.0
# 
#
#=======================================

BSNT_01035___      1 -------------ATGAA----AACAAAAGCAGCGGTCAGAAATATG-CG     32
                                  || ||    ||||.|| |||.|.|..||||.||| ||
BPUM_0524___r      1 TTGAAGGACAAAAAT-AATCTCAACATAA-CAGAGATTCGAAAAATGACG     48

BSNT_01035___     33 GCTTGAAGATAT-----AGATCACGTATACGAAATCGAA--GCATCCTCC     75
                     | |.|..||.||     ||.|   |||||||  ||.|||  ||||  ||.
BPUM_0524___r     49 G-TAGCGGACATTCCAGAGGT---GTATACG--ATTGAAGTGCAT--TCG     90

BSNT_01035___     76 TTTACGTCTCCTTGGACGAAGGATTCGTTTTATC-ATGAGCTGCTGGAAA    124
                     |||||..|.|||||||..||.||.|| .|||.|| |||||.|.||..|.|
BPUM_0524___r     91 TTTACTGCCCCTTGGAAAAAAGAATC-ATTTGTCTATGAGATTCTTCATA    139

BSNT_01035___    125 ATCCGTA-TGCTCATTATCTCGTGATTGAAAAGGACG-GCTATCTTGCTG    172
                     |.|.||| .|| ||||||.|..|.||||||.|.||.| || |.|.||.||
BPUM_0524___r    140 ACCAGTACAGC-CATTATTTTCTCATTGAAGAAGATGAGC-AACCTGTTG    187

BSNT_01035___    173 GGTATTGCGGGATTTGGATTGTGATGGACGATGCCCAAATTACAAATATA    222
                     |||||||||||.|.|||||.||.|||||||||||.||||||||.||.||.
BPUM_0524___r    188 GGTATTGCGGGGTCTGGATCGTCATGGACGATGCACAAATTACGAACATT    237

BSNT_01035___    223 GCGATAAAACCAGAGTATCGCGGCCAGTCTTTAGGAGAAACGCTTT--TT    270
                     ||.||....||.|||.||.|.||..||..||..||.|||  ||.||  |.
BPUM_0524___r    238 GCAATTCTCCCTGAGCATAGAGGAAAGGGTTACGGGGAA--GCATTGCTA    285

BSNT_01035___    271 CG----CTCAGCTGTTGAACTGTGCAAAGAAAAAGACGCAAGGCGG----    312
                     ||    .|||    |.|||.|.||.|||||||||     |||.|.|    
BPUM_0524___r    286 CGATATGTCA----TGGAATTTTGTAAAGAAAAA-----AAGACAGATCA    326

BSNT_01035___    313 -CTTTCGCTTGAAGTGAGGGTTTCGAAT-CATCCTGCTCAAGGCTTATAT    360
                      |||||..|.||.|||.|||||||.||| || |||||.|||..|.|.|||
BPUM_0524___r    327 TCTTTCTTTAGAGGTGCGGGTTTCAAATACA-CCTGCACAATCCCTTTAT    375

BSNT_01035___    361 AAGAAA---TTCGGGATGCAGCCCGGC-GGAATAAGAAAGAACTATTATA    406
                       ||||   ||  ||.|.|||.||.|| ...||..|||||||.|||||||
BPUM_0524___r    376 --GAAAAGCTT--GGTTTCAGACCAGCTTCTATTCGAAAGAATTATTATA    421

BSNT_01035___    407 CTGATAACGGGGAAGATGCGTTAATTATGTGGGTGACGATAAATGAGTGA    456
                     |.|||||.|||||||||||.||..|.||||||||||..||||||||||||
BPUM_0524___r    422 CGGATAATGGGGAAGATGCATTGGTCATGTGGGTGAATATAAATGAGTGA    471


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