Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01031 and BPUM_0522
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_01031___ydiB.1.24716.seq
# -bsequence dna-align/BPUM_0522___ydiB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01031___ydiB-BPUM_0522___ydiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01031___ydiB-BPUM_0522___ydiB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01031___ydiB
# 2: BPUM_0522___ydiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 505
# Identity: 337/505 (66.7%)
# Similarity: 337/505 (66.7%)
# Gaps: 65/505 (12.9%)
# Score: 1104.0
#
#
#=======================================
BSNT_01031___ 1 GTGAAGCAATTAAAATGGAGAACTGTAAA---TCCAGAAGAAACAAAAGC 47
|..||||..|| ||| |.|.||.||.||.|||..
BPUM_0522___y 1 ------------ATGTGGACGAC---AAAAGGTGCGGATGAGACGAAACG 35
BSNT_01031___ 48 AATTGCCAAGCTTGCGGCAGCGTTTGCTAAA---------CCGGGAGACG 88
||||||| ||.||.||.||.||| |||.|.||.|
BPUM_0522___y 36 AATTGCC---------GCTGCTTTGGCCAAACTTGTGATGCCGAGCGATG 76
BSNT_01031___ 89 TCCTGACATTAGAGGGCGATTTAGGTGCAGGAAAAACGACTTTTACGAAA 138
|..||||||||||.||.||||||||.|||||.||||||||||||.|.|||
BPUM_0522___y 77 TTTTGACATTAGAAGGGGATTTAGGCGCAGGCAAAACGACTTTTTCAAAA 126
BSNT_01031___ 139 GGTTTTGCAGAAGGGCTGGGAATTACACGTATTGTAAACAGTCCGACTTT 188
||.|||||||||||..|.||.|||||.|||||.||.|||||.||.||.||
BPUM_0522___y 127 GGCTTTGCAGAAGGCTTAGGGATTACCCGTATCGTCAACAGCCCTACCTT 176
BSNT_01031___ 189 TACAATTATAAAAGAATATAACGATGGCGTACTTCCTCTTTATCACATGG 238
|||.|||||.||||||||||.|||||||..|||.||.||||||||.||||
BPUM_0522___y 177 TACGATTATTAAAGAATATACCGATGGCAGACTGCCACTTTATCATATGG 226
BSNT_01031___ 239 ATGTGTATAGAATGGAAGAT---GAAAGTGAAGATTTGGGACTTGATGAA 285
|||||||..|.||||||||| ||| ||||||.|.||.|||||.|||
BPUM_0522___y 227 ATGTGTACCGCATGGAAGATGCGGAA---GAAGATATCGGTCTTGAAGAA 273
BSNT_01031___ 286 TATTTTCACGGACAAGGTGTCTGTCTCGTTGAATGGGCTCATTTAATTGA 335
||||||.|.||..|||||||.||..|.|||||.|||||.|||.|.||||
BPUM_0522___y 274 TATTTTGAGGGCGAAGGTGTATGCTTGGTTGAGTGGGCACATCTCATTG- 322
BSNT_01031___ 336 AGAAC------AGCTGCCACAGGAGCGA-CTGCAAATTGTCATCAAAAGA 378
||.| |.||.||.| |.| .||.||||.|..||...||||
BPUM_0522___y 323 -GACCTCAATTACCTTCCTC-----CTATTTGAAAATAGAAATGCTAAGA 366
BSNT_01031___ 379 GCTG---GTGATGATGAGCGGGAAATTACCTTTACTGCTGTCGGGAATCG 425
.|.| ||||.||.||.||..|..||||.||||.|||....|||.|.||
BPUM_0522___y 367 ACAGAACGTGAAGAAGAACGTCATCTTACGTTTAGTGCAAAAGGGGAACG 416
BSNT_01031___ 426 GTATGAAATGCTTTGTGAGGAG-TTAAGTAGACA--TGACAATATTAGCA 472
.|||||.|..||||||.||||| |.|| ||| | ||||.|||.|.|||
BPUM_0522___y 417 CTATGAGACCCTTTGTAAGGAGATGAA--AGA-ATTTGACCATACTGGCA 463
BSNT_01031___ 473 ATTGA 477
|||||
BPUM_0522___y 464 ATTGA 468
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