Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01030 and BPUM_0521
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:40
# Commandline: needle
# -asequence dna-align/BSNT_01030___thiL.1.24716.seq
# -bsequence dna-align/BPUM_0521___thiL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01030___thiL-BPUM_0521___thiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01030___thiL-BPUM_0521___thiL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01030___thiL
# 2: BPUM_0521___thiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1090
# Identity: 647/1090 (59.4%)
# Similarity: 647/1090 (59.4%)
# Gaps: 224/1090 (20.6%)
# Score: 1764.0
#
#
#=======================================
BSNT_01030___ 1 ATGGATGAATTTGATTTGATACATAGCATTACTCCGCGGACCA------- 43
|||||||||||||||.|.||.|...|.|||||.|| |.||
BPUM_0521___t 1 ATGGATGAATTTGATCTTATTCGCCGAATTACACC----AACAGAAACAC 46
BSNT_01030___ 44 TTCACCATTCTTCCGTTGATGTAGGAATAGGGGATGATGC-AGCG----- 87
.|||.|.|||||..||| ||| ||.||.||.|||||||| ||.|
BPUM_0521___t 47 ATCAGCGTTCTTTGGTT-ATG--GGCATCGGTGATGATGCAAGTGTTTAT 93
BSNT_01030___ 88 ----CTC---TACACTGCGAAACACGGCGTTCAGGAAATTGTTTGTGTTG 130
||| .|||.||.||| ||..|.||||||||||
BPUM_0521___t 94 CAACCTCATTCACATTGTGAA-------------GAGGTCGTTTGTGTTG 130
BSNT_01030___ 131 ATACTATGGTAGAAGACGTGCACTTCAAATTACACTATTCCTCACCTGAA 180
||||.|||||.|||.|.||.||.||....||..|.|.||||.|||||...
BPUM_0521___t 131 ATACAATGGTGGAACATGTTCATTTTCGCTTTGATTTTTCCACACCTTTT 180
BSNT_01030___ 181 GATATCGGGTATAAGGCGTTAGCCGTTAATATAAGTGATATTGCCGCGAT 230
||.||.||.|.|||.||..||||.||.|||.|.||||||||.|||||.||
BPUM_0521___t 181 GAGATTGGCTTTAAAGCACTAGCGGTCAATGTCAGTGATATCGCCGCAAT 230
BSNT_01030___ 231 GGGAGGCATTCCGAAATTTTATTTGGTATCACTTGCGGTACCTTCAAA-- 278
||||||.|.|||.||.|.||||.|.||||||.||||..|.||..|..|
BPUM_0521___t 231 GGGAGGAACTCCAAAGTATTATCTTGTATCAATTGCTATCCCGCCTCATG 280
BSNT_01030___ 279 ---ATG-GACGG-CATCCGAAATCAAGGCGATGTATGAAGGAATGAATGA 323
||| ||||| |.| .||| ||..|.||.||.||||||||.|.
BPUM_0521___t 281 GTGATGAGACGGTCGT-----GTCA--GCTCTTTACGAGGGAATGAAAGC 323
BSNT_01030___ 324 ACTGGC-GAAACTATATCAGATGGATCTGATTGGCGGCGATACAGTTTCT 372
|.|||| ||.||| |||||.||||||.|||||||.||.|||||.|| |
BPUM_0521___t 324 ATTGGCTGATACT-TATCAAATGGATTTGATTGGTGGAGATACGGT---T 369
BSNT_01030___ 373 ACCGCTGACA---AATTAGTCGTTACAGTCACTGTGATCGGTGAAGT-TG 418
.||.||.||| |.||..||.|||||||.||.||.||.||.||.|| |.
BPUM_0521___t 370 GCCACTCACAGTGACTTTATCATTACAGTGACAGTCATTGGCGAGGTATC 419
BSNT_01030___ 419 AAAAGGGACGTGCCTGTT----------TGCGCAGTCTGGCAAGACCGAA 458
|||||||| ..||.|||| |||.|||.|.|| ||||
BPUM_0521___t 420 AAAAGGGA-AAGCTTGTTATCGTCACAGTGCTCAGACAGG--AGAC---- 462
BSNT_01030___ 459 TGATGTTGTGTTTGTAACCGGTGAAATCGGTTCTTCTGCAGCAGGGCTT- 507
.|.||.|||||.||.|||||..|.|||||.||.||.|| ||||||
BPUM_0521___t 463 ----ATCGTCTTTGTCACAGGTGAGCTTGGTTCATCAGCTGC-GGGCTTA 507
BSNT_01030___ 508 TC---TTTATTGCTGGAA-GAGACTAATCCTCAAAACTCATCTGTGGAAA 553
|| ||||.||...||| .||||| |||..||..|| ||.||.|
BPUM_0521___t 508 TCACTTTTAATGAACGAATTAGACT----CTCCCAAGGCA---GTCGACA 550
BSNT_01030___ 554 CGG----ATTACTTTATCCACAGGCATAAACGGCCTGAGCCAAGAGTAAG 599
|.| .||.|||.|.| |.||||||...|||.||||
BPUM_0521___t 551 CAGCCTTTTTTCTTGAGC----GTCATAAAAAACCTCAGCC--------- 587
BSNT_01030___ 600 CGTCGGCAGATT-ATGCTCG----ATTT-------TTA---AACGGGCAG 634
.||.||| .||||.| |||| ||| || |||...
BPUM_0521___t 588 -----TCACATTGCTGCTGGTCTCATTTGCTCAAGTTACTCAA-GGGTCT 631
BSNT_01030___ 635 CTTTAAATGATGTTAGTGACGGATTGGCTAGTGAACTGAACGAGATTGCA 684
|.||.||||||||.|||||.|||||.||.|||||.|||||.|||||.||.
BPUM_0521___t 632 CCTTGAATGATGTGAGTGATGGATTAGCGAGTGAGCTGAATGAGATAGCC 681
BSNT_01030___ 685 GAAGCCAGCTGTGTTTCAATTGAAATTGATGAAAGCATGCTTCCAATTCA 734
|||||.||...|||..|.||.||.||.||||.||..|.|||.||.||.||
BPUM_0521___t 682 GAAGCGAGTCATGTGACGATAGAGATAGATGCAAATAAGCTCCCCATACA 731
BSNT_01030___ 735 TTCTGATTTGCCTAAGCTTCATCCT-------AACTGGAAAGAATGGGCT 777
|.|.|||||.|| || |||| .|||||...|||||||..
BPUM_0521___t 732 TCCAGATTTACC--AG-----TCCTGCGTAAAGACTGGCTGGAATGGGTG 774
BSNT_01030___ 778 TTGTTTGGCGGTGAGGATTTTGAGCTGACAGGGACGGTTTCAAAAGAGGA 827
||.|||||.||.||.||.||||...|.||.||.||..||.||.|.|..||
BPUM_0521___t 775 TTATTTGGTGGGGAAGACTTTGTATTAACTGGTACAATTCCACAGGCTGA 824
BSNT_01030___ 828 GTGGGA-AGTGTTGAA--GCA--GCAGTGCGCAGCACGTCAACTTCCCAT 872
.||||| ||..||||| ||| |.|| ||
BPUM_0521___t 825 TTGGGATAGCTTTGAAATGCAATGTAG-------------AA-------- 853
BSNT_01030___ 873 TACAAAGATTGGCCATGTCAGGGAAAAAACA------AAATCTAAAGTGA 916
|.||||| ||| |||.|..|||..|| ||.||.||.||||
BPUM_0521___t 854 -AAAAAGA-----CAT-TCAAGTCAAACGCATTGGACAAGTCAAAGGTGA 896
BSNT_01030___ 917 TC-----------------CTAAA--------AACAGATCAAACATCAAT 941
|| .|||| ||||| ||||||
BPUM_0521___t 897 TCAGGCAGCAAGCGTTCTATTAAAAGACAATGAACAG--CAAACA----- 939
BSNT_01030___ 942 GATCTTAGAGAAAAAGGGATATAATCATTTTAAATAA--- 978
||.|||..||||||.|||||||||||||||||..||
BPUM_0521___t 940 -ATGTTAATGAAAAAAGGATATAATCATTTTAAGAAATGA 978
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