Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01030 and BPUM_0521

See Amino acid alignment / Visit BSNT_01030 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:40
# Commandline: needle
#    -asequence dna-align/BSNT_01030___thiL.1.24716.seq
#    -bsequence dna-align/BPUM_0521___thiL.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01030___thiL-BPUM_0521___thiL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01030___thiL-BPUM_0521___thiL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01030___thiL
# 2: BPUM_0521___thiL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1090
# Identity:     647/1090 (59.4%)
# Similarity:   647/1090 (59.4%)
# Gaps:         224/1090 (20.6%)
# Score: 1764.0
# 
#
#=======================================

BSNT_01030___      1 ATGGATGAATTTGATTTGATACATAGCATTACTCCGCGGACCA-------     43
                     |||||||||||||||.|.||.|...|.|||||.||    |.||       
BPUM_0521___t      1 ATGGATGAATTTGATCTTATTCGCCGAATTACACC----AACAGAAACAC     46

BSNT_01030___     44 TTCACCATTCTTCCGTTGATGTAGGAATAGGGGATGATGC-AGCG-----     87
                     .|||.|.|||||..||| |||  ||.||.||.|||||||| ||.|     
BPUM_0521___t     47 ATCAGCGTTCTTTGGTT-ATG--GGCATCGGTGATGATGCAAGTGTTTAT     93

BSNT_01030___     88 ----CTC---TACACTGCGAAACACGGCGTTCAGGAAATTGTTTGTGTTG    130
                         |||   .|||.||.|||             ||..|.||||||||||
BPUM_0521___t     94 CAACCTCATTCACATTGTGAA-------------GAGGTCGTTTGTGTTG    130

BSNT_01030___    131 ATACTATGGTAGAAGACGTGCACTTCAAATTACACTATTCCTCACCTGAA    180
                     ||||.|||||.|||.|.||.||.||....||..|.|.||||.|||||...
BPUM_0521___t    131 ATACAATGGTGGAACATGTTCATTTTCGCTTTGATTTTTCCACACCTTTT    180

BSNT_01030___    181 GATATCGGGTATAAGGCGTTAGCCGTTAATATAAGTGATATTGCCGCGAT    230
                     ||.||.||.|.|||.||..||||.||.|||.|.||||||||.|||||.||
BPUM_0521___t    181 GAGATTGGCTTTAAAGCACTAGCGGTCAATGTCAGTGATATCGCCGCAAT    230

BSNT_01030___    231 GGGAGGCATTCCGAAATTTTATTTGGTATCACTTGCGGTACCTTCAAA--    278
                     ||||||.|.|||.||.|.||||.|.||||||.||||..|.||..|..|  
BPUM_0521___t    231 GGGAGGAACTCCAAAGTATTATCTTGTATCAATTGCTATCCCGCCTCATG    280

BSNT_01030___    279 ---ATG-GACGG-CATCCGAAATCAAGGCGATGTATGAAGGAATGAATGA    323
                        ||| ||||| |.|     .|||  ||..|.||.||.||||||||.|.
BPUM_0521___t    281 GTGATGAGACGGTCGT-----GTCA--GCTCTTTACGAGGGAATGAAAGC    323

BSNT_01030___    324 ACTGGC-GAAACTATATCAGATGGATCTGATTGGCGGCGATACAGTTTCT    372
                     |.|||| ||.||| |||||.||||||.|||||||.||.|||||.||   |
BPUM_0521___t    324 ATTGGCTGATACT-TATCAAATGGATTTGATTGGTGGAGATACGGT---T    369

BSNT_01030___    373 ACCGCTGACA---AATTAGTCGTTACAGTCACTGTGATCGGTGAAGT-TG    418
                     .||.||.|||   |.||..||.|||||||.||.||.||.||.||.|| |.
BPUM_0521___t    370 GCCACTCACAGTGACTTTATCATTACAGTGACAGTCATTGGCGAGGTATC    419

BSNT_01030___    419 AAAAGGGACGTGCCTGTT----------TGCGCAGTCTGGCAAGACCGAA    458
                     |||||||| ..||.||||          |||.|||.|.||  ||||    
BPUM_0521___t    420 AAAAGGGA-AAGCTTGTTATCGTCACAGTGCTCAGACAGG--AGAC----    462

BSNT_01030___    459 TGATGTTGTGTTTGTAACCGGTGAAATCGGTTCTTCTGCAGCAGGGCTT-    507
                         .|.||.|||||.||.|||||..|.|||||.||.||.|| |||||| 
BPUM_0521___t    463 ----ATCGTCTTTGTCACAGGTGAGCTTGGTTCATCAGCTGC-GGGCTTA    507

BSNT_01030___    508 TC---TTTATTGCTGGAA-GAGACTAATCCTCAAAACTCATCTGTGGAAA    553
                     ||   ||||.||...||| .|||||    |||..||..||   ||.||.|
BPUM_0521___t    508 TCACTTTTAATGAACGAATTAGACT----CTCCCAAGGCA---GTCGACA    550

BSNT_01030___    554 CGG----ATTACTTTATCCACAGGCATAAACGGCCTGAGCCAAGAGTAAG    599
                     |.|    .||.|||.|.|    |.||||||...|||.||||         
BPUM_0521___t    551 CAGCCTTTTTTCTTGAGC----GTCATAAAAAACCTCAGCC---------    587

BSNT_01030___    600 CGTCGGCAGATT-ATGCTCG----ATTT-------TTA---AACGGGCAG    634
                          .||.||| .||||.|    ||||       |||   || |||...
BPUM_0521___t    588 -----TCACATTGCTGCTGGTCTCATTTGCTCAAGTTACTCAA-GGGTCT    631

BSNT_01030___    635 CTTTAAATGATGTTAGTGACGGATTGGCTAGTGAACTGAACGAGATTGCA    684
                     |.||.||||||||.|||||.|||||.||.|||||.|||||.|||||.||.
BPUM_0521___t    632 CCTTGAATGATGTGAGTGATGGATTAGCGAGTGAGCTGAATGAGATAGCC    681

BSNT_01030___    685 GAAGCCAGCTGTGTTTCAATTGAAATTGATGAAAGCATGCTTCCAATTCA    734
                     |||||.||...|||..|.||.||.||.||||.||..|.|||.||.||.||
BPUM_0521___t    682 GAAGCGAGTCATGTGACGATAGAGATAGATGCAAATAAGCTCCCCATACA    731

BSNT_01030___    735 TTCTGATTTGCCTAAGCTTCATCCT-------AACTGGAAAGAATGGGCT    777
                     |.|.|||||.||  ||     ||||       .|||||...|||||||..
BPUM_0521___t    732 TCCAGATTTACC--AG-----TCCTGCGTAAAGACTGGCTGGAATGGGTG    774

BSNT_01030___    778 TTGTTTGGCGGTGAGGATTTTGAGCTGACAGGGACGGTTTCAAAAGAGGA    827
                     ||.|||||.||.||.||.||||...|.||.||.||..||.||.|.|..||
BPUM_0521___t    775 TTATTTGGTGGGGAAGACTTTGTATTAACTGGTACAATTCCACAGGCTGA    824

BSNT_01030___    828 GTGGGA-AGTGTTGAA--GCA--GCAGTGCGCAGCACGTCAACTTCCCAT    872
                     .||||| ||..|||||  |||  |.||             ||        
BPUM_0521___t    825 TTGGGATAGCTTTGAAATGCAATGTAG-------------AA--------    853

BSNT_01030___    873 TACAAAGATTGGCCATGTCAGGGAAAAAACA------AAATCTAAAGTGA    916
                      |.|||||     ||| |||.|..|||..||      ||.||.||.||||
BPUM_0521___t    854 -AAAAAGA-----CAT-TCAAGTCAAACGCATTGGACAAGTCAAAGGTGA    896

BSNT_01030___    917 TC-----------------CTAAA--------AACAGATCAAACATCAAT    941
                     ||                 .||||        |||||  ||||||     
BPUM_0521___t    897 TCAGGCAGCAAGCGTTCTATTAAAAGACAATGAACAG--CAAACA-----    939

BSNT_01030___    942 GATCTTAGAGAAAAAGGGATATAATCATTTTAAATAA---    978
                      ||.|||..||||||.|||||||||||||||||..||   
BPUM_0521___t    940 -ATGTTAATGAAAAAAGGATATAATCATTTTAAGAAATGA    978


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