Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00034 and BPUM_0513
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:20:58
# Commandline: needle
# -asequence dna-align/BSNT_00034___yaaH.1.24716.seq
# -bsequence dna-align/BPUM_0513___yaaH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00034___yaaH-BPUM_0513___yaaH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00034___yaaH-BPUM_0513___yaaH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00034___yaaH
# 2: BPUM_0513___yaaH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1368
# Identity: 897/1368 (65.6%)
# Similarity: 897/1368 (65.6%)
# Gaps: 150/1368 (11.0%)
# Score: 2707.5
#
#
#=======================================
BSNT_00034___ 1 ------------------GTGGTAAAACAAGGCGACACTCTTT------- 25
||.||.|||..|||.||.| ||||
BPUM_0513___y 1 TTGACTATTCAAATTTATGTTGTCAAAAGAGGAGATA--CTTTAAACGAA 48
BSNT_00034___ 26 -CTGCTAT-CGCTTCACAATACAGAACAACCGCAAATGAGATC--GCTGA 71
.|||.|| ||.|| .|.||||||.|..|||||.||| .|.||
BPUM_0513___y 49 ATTGCCATGCGTTT-------TAAAACAACAGTCAATGAAATCATCCGGA 91
BSNT_00034___ 72 --AACG--AATGAAATACCGAATCCCGACAGCCTTGTTGTCGGACAAACC 117
|||| |.|||||.|||.|||| ..||.||..|.||||||||.
BPUM_0513___y 92 CCAACGATATTGAAACACCAAATC------AACTCGTCATTGGACAAACA 135
BSNT_00034___ 118 ATTGTCATTCCAA-TAGCTGGCCAGTTCTATGATGTGAAGCGAGGTGATA 166
||||||||||||| ||| .||.||.||.|||||.||.||.|.|..|||.|
BPUM_0513___y 136 ATTGTCATTCCAATTAG-AGGACAATTTTATGAGGTCAAACAAAATGACA 184
BSNT_00034___ 167 CCCTGACATCTATC-----GCCCGGC--------AGTTCAATACAACGGC 203
|.| |.|||| |...||| |.||||.||.||
BPUM_0513___y 185 CAC-----TTTATCAAATTGGAAGGCGATTTCGAATTTCAGTAGAA---- 225
BSNT_00034___ 204 AGCCGAGCTCGCAAGGGTTAACCGCATCCAG--TTAAATACCGTGCTTCA 251
|||||.|||.|.||.||..|.||.|.| |.|| .||.|.||||.
BPUM_0513___y 226 ----GAGCTGGCACGTGTGAATAGAATACGGCCTGAA--GCCATACTTCC 269
BSNT_00034___ 252 GATTGGTTTCCGTT--TATACATCCCACCATCTCCTAAACGAGACATCGA 299
.|||.|.||| || |.||.||.||.|.|...||||||.|..||||..|
BPUM_0513___y 270 TATTCGCTTC--TTGCTCTATATTCCTCAAAGACCTAAAAGGAACATTAA 317
BSNT_00034___ 300 ATCAAATGCTTATTTGGAGCCCCGAGGAAATCAAGTCAGCGAAAATCTCC 349
.||.||||||||..|.||.||.||.|||||||||||.||.|||||..|..
BPUM_0513___y 318 TTCGAATGCTTACATTGAACCACGGGGAAATCAAGTGAGTGAAAACTTAA 367
BSNT_00034___ 350 AGCAGGCGGCCAGAGAATCGTCGCCCTACTTAACGTACCTTGGCGCATTC 399
|.||.||.||.|||||..|.||.||.||.||||||.|..|.|||||.||.
BPUM_0513___y 368 AACAAGCAGCTAGAGAGGCCTCTCCATATTTAACGCATTTAGGCGCTTTT 417
BSNT_00034___ 400 AGCTTCCAGGCACAGCGTAACGGAAC-CTTAGTCGCACCGCCTTTAACGA 448
||.|||||.||.||..|..|.||||| ||.| ..|.|||.||.|||
BPUM_0513___y 418 AGTTTCCAAGCGCAAAGAGATGGAACACTGA-AAGAACCACCATTA---- 462
BSNT_00034___ 449 ATTTAAGGAGCA-TTA---CAGAAAG----TCAAAATACAAC--ATTGAT 488
||.|| .|| ||.|.|| |||||..|.||| .||.||
BPUM_0513___y 463 -------GATCAGCTACCTCAAATAGCCGCTCAAAGCAGAACTGTTTTAT 505
BSNT_00034___ 489 -GATGATTATAACGAACCTAGAAAACCAAGCATTCAGCGATGAACTTGGC 537
.|||.|..|.||.||.|||||.||..|...||||||.|||||||||||.
BPUM_0513___y 506 CCATGGTGGTGACTAATCTAGAGAATGATAAATTCAGTGATGAACTTGGG 555
BSNT_00034___ 538 CGGATCCTTTTGAACGACGAAACTGTAAAAAGACGGC-----TTCTAAAT 582
||.||.||||||||..||.||.||||.||| || ||.|||||
BPUM_0513___y 556 CGAATTCTTTTGAATAACCAATCTGTCAAA-----GCCACATTTTTAAAT 600
BSNT_00034___ 583 GAAATAG-TCGAGAATGCCAGAAGATATGGCTTCCGTGACATTCATTTCG 631
|||||.| ||| .|.|||.|.||..|||...||....||.||.|||||.|
BPUM_0513___y 601 GAAATCGTTCG-TATTGCAAAAAAGTATCAATTTAAAGAAATCCATTTTG 649
BSNT_00034___ 632 ACTTTGAATATTTGCGGCCCCAGGATAGAGAGGCTTATAATCAATTCCTC 681
|.|||||||||||.||.|||...||||.|||||||||.|.||||||..|.
BPUM_0513___y 650 ATTTTGAATATTTACGCCCCGCTGATAAAGAGGCTTACATTCAATTTTTA 699
BSNT_00034___ 682 CGCGAAGCAAGGGATCTTTTTCATCGAGAGGGCTTAGA-AATTTCTACGG 730
.|.||.||||.|...|..||.||||.|||.|| .|.|| |||.|||...|
BPUM_0513___y 700 AGAGAGGCAACGACCCGCTTCCATCAAGAAGG-ATGGACAATATCTGTTG 748
BSNT_00034___ 731 CTCTTGCTCCTAAAACAAGTGCAACACAGC---AGGGCAGATGGTATGAA 777
|.|||||.|||||||||||| |..|||| ||||.|.|||||||||.
BPUM_0513___y 749 CACTTGCCCCTAAAACAAGT---AGTCAGCAAAAGGGAAAATGGTATGAG 795
BSNT_00034___ 778 GCTCATGATTACAGGGCACATGGCCAAATTGTCGACTTTGTTGTTCTCAT 827
||||||||.||..|.||...|||..|.||.|||||...||||||..|.||
BPUM_0513___y 796 GCTCATGACTATGGAGCTATTGGGAATATCGTCGATCATGTTGTCTTAAT 845
BSNT_00034___ 828 GACATATGAATGGGGCTATAGCGGCGGGCCGCCTCAAGCGGTTTCTCCAA 877
|||.||.||||||||.||.||||||||.||..|.|||||.||.|||||.|
BPUM_0513___y 846 GACCTACGAATGGGGATACAGCGGCGGCCCTGCGCAAGCAGTCTCTCCCA 895
BSNT_00034___ 878 TTGGACCTGTCCGTGATGTCATAGAATATGCTTTGACTGAAATGCCTGCG 927
|||||||||||||.||.|||||.||||||||..||||.|..|||||.||.
BPUM_0513___y 896 TTGGACCTGTCCGCGAAGTCATTGAATATGCACTGACCGTTATGCCAGCC 945
BSNT_00034___ 928 AACAAAATTGTCATGGGCCAGAATTTATATGGATATGACTGGACGCTGCC 977
||.||||||||.|||||||||||.|||||.||.|||||.||||||||.||
BPUM_0513___y 946 AATAAAATTGTTATGGGCCAGAACTTATACGGCTATGATTGGACGCTTCC 995
BSNT_00034___ 978 ATA--TACAGCAGGGGGAACTCCGGCAAGAGCAGTAAGCCCTCAGCAAGC 1025
.|| |.|| |||.||..||...||.|.|||.||.||.||.||.|||||
BPUM_0513___y 996 TTACGTTCA--AGGCGGGCCTATCGCTAAAGCTGTCAGTCCCCAACAAGC 1043
BSNT_00034___ 1026 CATTGTCATAGCT-GATCAGAACAATGCTTCCATTCAGTATGATCAAACC 1074
.||||.|||.||| || .|.||.|||||.|||||||..|||||..||||.
BPUM_0513___y 1044 GATTGCCATTGCTAGA-AATAATAATGCCTCCATTCTATATGACGAAACA 1092
BSNT_00034___ 1075 GCTCAAGCTCCTTTCTTCCGCTATACTGATGC--AGAAAACAGAAGGCAC 1122
||||||||.||||..||.||.|||||.||||| |.||.|.||| ||||
BPUM_0513___y 1093 GCTCAAGCACCTTATTTTCGTTATACAGATGCCAATAATAAAGA--GCAC 1140
BSNT_00034___ 1123 GAGGTATGGTTCGAGGATGCCCGCTCGATTCAAGCAAAATTCAATCTGAT 1172
||.|||||||||||.|||||..|.||||||||||||||.|||||.||.||
BPUM_0513___y 1141 GAAGTATGGTTCGAAGATGCTAGATCGATTCAAGCAAAGTTCAACCTCAT 1190
BSNT_00034___ 1173 TAAAGAGCTGAATTTAAGAGGCATCAGC-TATTGGAAGCTGGGTCTTTCC 1221
.||||||.|.|..||.|..||.|| .|| ||||||||..|.|||||.|||
BPUM_0513___y 1191 CAAAGAGTTAAGCTTGAACGGGAT-TGCTTATTGGAAATTAGGTCTATCC 1239
BSNT_00034___ 1222 TTTCCACAAAACTGGCTGCTGCTGTCTGATCAATTTAATGTTGTCAAAAA 1271
||.||.|||||.|||||..|..|.||.||||||||||||.||| .|||||
BPUM_0513___y 1240 TTCCCTCAAAATTGGCTCTTATTATCAGATCAATTTAATATTG-AAAAAA 1288
BSNT_00034___ 1272 GACGTTTCGA-----TAA 1284
|| .||| |||
BPUM_0513___y 1289 GA----ACGACATCGTAA 1302
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