Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01853 and BPUM_0506
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_01853___yisV.1.24716.seq
# -bsequence dna-align/BPUM_0506.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01853___yisV-BPUM_0506.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01853___yisV-BPUM_0506.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01853___yisV
# 2: BPUM_0506
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1853
# Identity: 831/1853 (44.8%)
# Similarity: 831/1853 (44.8%)
# Gaps: 778/1853 (42.0%)
# Score: 1369.0
#
#
#=======================================
BSNT_01853___ 1 -------TTGTCGCAATGGCAGCCAAGCCGAAAGTCGGATA-------TT 36
||| || |.||| .|||.|.||.|||| ||
BPUM_0506 1 ATGCATATTG-----AT---ATCCA--TCGACATTCTGATACATCACTTT 40
BSNT_01853___ 37 CCGCTGCATCGGCAGATCGA----ACAAT-AT--ATGAAAGACAA----- 74
| |.|| |||||..| .|||| || ||.|.|..|||
BPUM_0506 41 C----GAAT---CAGATTTACTTTTCAATCATTGATCATATCCAATCGGG 83
BSNT_01853___ 75 ---GATTCTTCACGGAGAGTGGGCTG-----TAGGGACGAAAATCCCCTC 116
|.|||..||.||||| |..|||| | |.|||..|.| |.
BPUM_0506 84 TTTGCTTCAACAGGGAGA-TAAGCTGCCAACT--GTACGTGATT----TA 126
BSNT_01853___ 117 ACAGAGAACGCTGGCCGACATGT--TTCAAGTCAACCGCAGCACAGTCAC 164
.||.||.| |.|| .|||| .||..||| ||.||||||.||.||.
BPUM_0506 127 GCAAAGCA-GTTG-----AATGTGAGTCTTGTC-ACGGCAGCAAAGGCAT 169
BSNT_01853___ 165 AGCA----GCTATAGATGAAC----------TCACGTCT---CAAGGCTT 197
| || ||| ||.|.|| |.|||.|| |||||
BPUM_0506 170 A-CACTCGGCT---GAAGGACGACGGATATTTAACGACTGTGCAAGG--- 212
BSNT_01853___ 198 GTTAGAGGGAAGAAGAGGCG---GCGGTACGAAGGTTGTAAA------CA 238
|.|||.|.|| |.|| |.|| |.||.||| ||
BPUM_0506 213 ----------AAAAGGGACGTTTGTGG-ATGA--GCTGCAAAAGCAGTCA 249
BSNT_01853___ 239 GTACTTGGAGCGTGCTGGCGGCTGAGCCACCGC--TTGATTGGAGCGATT 286
|.|.||..|| |..|| |.|.|.|||.| ||||||||
BPUM_0506 250 GAAATTCCAG-----TTCCG--TCATCTACCTCTTTTGATTGG------- 285
BSNT_01853___ 287 ACGTCCGTTCGGGCATTCATCGCGCCAATTCTT--CCA---TCATTCAAG 331
|.||| ||..|||.|| .|||.|| ||| || ||||
BPUM_0506 286 ----CAGTT-----ATCTATCCCG--GATTATTTACCACGGTC--TCAA- 321
BSNT_01853___ 332 CTATTAATCAGAACGAACCAAGAGCGGATATCATCAGATTAGGAACT--- 378
.||..|||| |||| |||
BPUM_0506 322 --TTTGCTCAG-----------------TATC------------ACTATG 340
BSNT_01853___ 379 --GGAGAA-CTATCACCGGATCTTGTGCCTGCTGACACAATTGGACGGAT 425
|.|||| |.||||.|...|||| ||| || ||
BPUM_0506 341 TCGAAGAAGCGATCAACCTTTCTT---CCT-CT---------------AT 371
BSNT_01853___ 426 GTTTCAGCAAATCAATCC-GGGC----GC----CCTGTCTTTAG-----G 461
| |||.|||| |||| || ||.||.||||| |
BPUM_0506 372 G---------ATCGATCCAGGGCTTTTGCCAAACCGGTATTTAGAAAAAG 412
BSNT_01853___ 462 ATATG-AGC-------AGCC------------------------------ 473
|.||| ||| ||||
BPUM_0506 413 AAATGCAGCATGTCCTAGCCAGACATCCTCAAATCATGTCAAAGTACGGA 462
BSNT_01853___ 474 GA-----AAGGAAACCGTCAGCTGCGGGAGG-----CAGTGGCCGACCAT 513
|| ||||..|.|.||||||.|||.|.| |||| |.|
BPUM_0506 463 GAAATTCAAGGGGATCTTCAGCTTCGGCAAGTCATTCAGT-------CTT 505
BSNT_01853___ 514 TT-----AAAA--GGAAAGAAGATCCATGTGTCACCGTCTGC-------A 549
|| |||| || ||||| ||.|||.| |
BPUM_0506 506 TTTTAGAAAAATTGG-----------ATGTG---CCTTCTACTCCTGAAA 541
BSNT_01853___ 550 ATTTTAATTGT-----GTCCGGTGCACTTCAGGCACTTCA---GCTCATC 591
||.|| .|||| || |||.| |||| || |||
BPUM_0506 542 ATATT-CTTGTAACTAGT--GGTTC---TCAG------CAAGGGCT---- 575
BSNT_01853___ 592 TCAATTGG----AC-----TTTTAAAACG----AGATTCTGTCATTTTGA 628
|.|.|||| || ||| |.|| .|||..|||..||.|.|
BPUM_0506 576 TGATTTGGTTGCACGTGCGTTT---ATCGGTCCTGATGATGTAGTTGTCA 622
BSNT_01853___ 629 CGGAGAAGCCGTCCTACCTTCAATCC--------TTGCATGTATTTCAAT 670
.|||| || .||.|||| |||| ||| ||||.|||
BPUM_0506 623 TGGAG--GC--ACCAACCT---ATCCAGGCGCCATTG-ATGTCTTT---- 660
BSNT_01853___ 671 CAGCTGGGATGCGGCTTCGCGGC-------------TTGCCGATGGATGA 707
||| |||...|.||| .|.||..|.|||.|
BPUM_0506 661 --------ATG-GGCAGAGGGGCAAGAATTATTACAGTCCCTGTTGATCA 701
BSNT_01853___ 708 TGAAGGGGTCA-----AAGCGGGGCTTGTTTCTTCTAATC------GAAA 746
||||||..|.| ||||.| ||||.||.| ||.|
BPUM_0506 702 TGAAGGAATGAACATGAAGCAG---------CTTCAAAGCATTTGTGATA 742
BSNT_01853___ 747 ACAATATGGAGGACAGCTGCTTTACACGATTCCGTCGTTTCATAATCCGA 796
|||||..|..|.||||..|.|||||||||||..|.||.||.|.|||||
BPUM_0506 743 --AATATAAACCAAAGCTCATCTACACGATTCCTACTTTCCACAGTCCGA 790
BSNT_01853___ 797 CAGGC-ACAGTCATGTCAGAGCAGCGAAGGAAAGAGATCA-------TCA 838
||||| .|||| ||||||..|.|.||.||.||| || |||
BPUM_0506 791 CAGGCGCCAGT-ATGTCAATGAAACGCAGAAAA-----CAACTTCTCTCA 834
BSNT_01853___ 839 GCCTG--TCAAA-AAAAGAGCAGCTGCCCATCATT---GAGGATGATGCG 882
||| ||||| .|..|| .||.| ||||| |||||||||.|.
BPUM_0506 835 --CTGGCTCAAAGTATTGA----TTGTC--TCATTGTAGAGGATGATCCT 876
BSNT_01853___ 883 TACGGTGATTTATGGTTTGAAGAAAAACCTCC-GCAGCCGTTGAAAG-CA 930
||..||||..|||..||.|||.|.||.||.|| |||.|..||.|||| |
BPUM_0506 877 TATCGTGAGCTATATTTCGAAAAGAAGCCGCCAGCACCTATTAAAAGTC- 925
BSNT_01853___ 931 ATGGATCATGAGGGCAATATTCTGTATCTGGGCACGT------------- 967
|||||||||| |||.|||||
BPUM_0506 926 -TGGATCATGA-----------------TGGACACGTCATTTATTTACGA 957
BSNT_01853___ 968 --TTTCA--AAAACGGTTAGCCCCGGCCTGC-GAATCGG--------CTG 1004
|||.| |||||..|| ||.||.|..||| ||||.|| ||
BPUM_0506 958 GGTTTAAGTAAAACACTT-GCTCCAGGATGCAGAATTGGGATTATCACT- 1005
BSNT_01853___ 1005 GCTTGCCGG-TCCGGAGCCGGTTATTGAAAGGTTGGCGGACATTA----- 1048
|||| |.|| || |.||||.||..||| .||||
BPUM_0506 1006 GCTT-CAGGCTC--------GATATTTAATCGTT------TATTAGCTGC 1040
BSNT_01853___ 1049 AAATGCAGACAGACTACGGA-TCAAGCGGCC----TGTC----------C 1083
|||.|| .|.||..|| |.|.||.||| |.|| |
BPUM_0506 1041 AAAGGC-----CAATAATGATTTAGGCAGCCCTCTTCTCACACAAAAAGC 1085
BSNT_01853___ 1084 CAGTGGGCGGCTGCCGAGTGGCTG---TCACAGGGGTATTATGA-AGAGC 1129
||.| .|||| .|..||| |||.|| |..|||| .||.|
BPUM_0506 1086 CATT------TTGCC--ATTTCTGACATCAAAG----AAAATGATTGATC 1123
BSNT_01853___ 1130 AT---------CTGA-------CTT--GGGTACGCAGGAAGCTTAAAGAA 1161
|| |||| ||| .||| ||.||.|.|...|
BPUM_0506 1124 ATACGAAAAAGCTGAGAACCGCCTTAATGGT------GAGGCGTGATTTA 1167
BSNT_01853___ 1162 AGGAGAGACGCCGCCGTTCATTTTCTCG-AGCGGTATGCCGGGGAC---- 1206
|.||.|||.| |.||.||| ||| |||| ||
BPUM_0506 1168 ATGATAGATG----------TATTATCGAAGC---ATGC-----ACCAAA 1199
BSNT_01853___ 1207 --AT-TGCCACGTGGCGGATTCCCGCAGGCGGCTTTTATATTTGGGT-GA 1252
|| || |||||||..||||| |..|||| ||
BPUM_0506 1200 AGATGTG--ACGTGGCAAATTCC-----------------TCAGGGTGGA 1230
BSNT_01853___ 1253 C---ATTTCACAAAAACCTGCCTGTTAGCCGTTTCTTTTATGGATTGCTG 1299
| |||| .||.| ||||| ||||.||..|||.|.|.|
BPUM_0506 1231 CTCAATTT---------ATGGC--TTAGC--TTTCCTTCCTGGGTCGAT- 1266
BSNT_01853___ 1300 AAACG-GCAGGTGCTTGTGAATCCCGGCTATATTTATGACGGTGAAG-AC 1347
|.||| ||| |||.||.| |||.| ||
BPUM_0506 1267 ACACGTGCA----CTTCTGCA---------------------TGAGGCAC 1291
BSNT_01853___ 1348 CGAAACAGCA---------TCAGGCTGTCATATTC-CTATGCATCTCTTG 1387
..|||||||| ||.|.|||.| || .|.||| |.||.||
BPUM_0506 1292 GCAAACAGCAAATCACCTTTCTGCCTGGC----TCTGTGTGC-TATCCTG 1336
BSNT_01853___ 1388 GAGATTTGG--------AAACT-----GGCATTA---------------- 1408
|||| | ||||| .||.|||
BPUM_0506 1337 GAGA----GCCGAAGCAAAACTATATCCGCCTTAGCTTTTCTTATGTGAA 1382
BSNT_01853___ 1409 --AAGCGGCAGCTGAAACAGCACGCCGCCTG-----ATGATGT------- 1444
||..||| |||||.|.|| .||.|| ||.||||
BPUM_0506 1383 TGAAAAGGC-GCTGATAGAG-----GGCGTGGAAAAATTATGTGGTATTT 1426
BSNT_01853___ 1445 ---------CCTAG------------------------------------ 1449
|||.|
BPUM_0506 1427 TTCAGCAAGCCTTGTCCACTCCTCAAAATCACAAACAATCTCTTTTCTTT 1476
BSNT_01853___ 1449 --- 1449
BPUM_0506 1477 TAA 1479
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