Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00887 and BPUM_0500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:37
# Commandline: needle
# -asequence dna-align/BSNT_00887.1.24716.seq
# -bsequence dna-align/BPUM_0500.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00887-BPUM_0500.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00887-BPUM_0500.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00887
# 2: BPUM_0500
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 978
# Identity: 560/978 (57.3%)
# Similarity: 560/978 (57.3%)
# Gaps: 216/978 (22.1%)
# Score: 1411.0
#
#
#=======================================
BSNT_00887 1 ----ATGAAAAATACCCTGT-TAGGTTCTATATATTTAGCTTTAGCCGCT 45
|||||||||| | ||||..|..|.||..||||..|.||.||.
BPUM_0500 1 ATGAATGAAAAATA-----TATAGGCGCCCTTTACCTAGCAATCGCAGCA 45
BSNT_00887 46 AGTATCTGGGGTGGCATGTATGTTGTGGTTAAGGTTGTTGTCGCAGTAAT 95
|||||.|||||.||.|||||||||||.||.||.||....||.||.||..|
BPUM_0500 46 AGTATTTGGGGCGGTATGTATGTTGTTGTCAAAGTCACAGTAGCGGTTGT 95
BSNT_00887 96 TCCGCCTTTTGAATTGGTTTGGATCAGGTATGTCATCGC---CATCCTTG 142
.|||||..||||..|.||.|||||.||.||||..||.|| .|||.||.
BPUM_0500 96 CCCGCCACTTGAGCTCGTCTGGATGAGATATGCTATAGCAGGAATCGTTT 145
BSNT_00887 143 CGCTTCTTA----TTG----TTGG--------------TTTGATAAGGAA 170
.|.|..||| ||| |||| ||.||||| ||
BPUM_0500 146 TGGTGTTTACCATTTGGCGCTTGGGCTATTCCTTTCAATTAGATAA--AA 193
BSNT_00887 171 ACAATCTTGGAAAATTCATAAGCGCGACCTTTTATTAATTGTTGCCATTG 220
|..|| ||.| ||| |||| ..||||| ||||
BPUM_0500 194 AAGAT--------ATCC-----CGC------TTAT--GGTGTTG--ATTG 220
BSNT_00887 221 GAATTGTTGGCAACACCATTTCAATTGTTACACAAGAATATGGAACGATG 270
|..|..|.||.||...|.|||||||.||.||.||||||..|||.||||||
BPUM_0500 221 GGCTGATCGGAAATTTCCTTTCAATCGTGACTCAAGAAATTGGGACGATG 270
BSNT_00887 271 TTGTCTTCAGCACAAATGGGAGCAATTATTACGTCCTCCACACCAGCGTT 320
|...|.||.|||||||||||.||..|||||||.||..|.||.||.|||||
BPUM_0500 271 TATACCTCTGCACAAATGGGGGCTGTTATTACATCTGCAACTCCTGCGTT 320
BSNT_00887 321 CATGGTTATTTTTGCT---CGTCTATTACTTAAAGAA-CCATTGAATATA 366
.|||||..|.|||||| ..||||||| |||||| ||| |||.|.|.
BPUM_0500 321 TATGGTGCTGTTTGCTTTCTTTCTATTA---AAAGAAGCCA-TGACTGTT 366
BSNT_00887 367 AAAAAAGGAACTTCAATAATTTTAGCGACCACAGGCGTATTATTTATTGT 416
..|||..|..|.||.||..|..|.|||||..||||.||||...|.||..|
BPUM_0500 367 CGAAAGTGCGCATCCATCCTGCTTGCGACAGCAGGTGTATGGCTCATGAT 416
BSNT_00887 417 TGGA----------AACGGACATATTGATACCTCTAATCAGCTTGGCGGT 456
|||| .||.||||.||..|| |||.||||
BPUM_0500 417 TGGACCAGTTGCAGTACAGACAGATGAAT-------------TTGTCGGT 453
BSNT_00887 457 --------AT-----TTCTCTGCTTGTTGCAGCCCTTACATGGGCACTGA 493
|| |||.|||||| |.||||||||.||||
BPUM_0500 454 GGTCTTTCATTGGTCTTCGCTGCTT----------TAACATGGGCGCTGA 493
BSNT_00887 494 TGTCAGTGCTTATCAAACGCGTGCCA--AACAGCTATTCGCCTATACT-- 539
||||.||..|..|||||||.||.||| || || ||..||
BPUM_0500 494 TGTCTGTTTTGCTCAAACGTGTTCCAGGAA-AG---------TACCCTCA 533
BSNT_00887 540 --TGTT----ACCACGTATTCAACTTTTGTGGCCATTGTGGCACTAACTC 583
||.| |||||.|||.|.|.|.| |||| |||.|.|
BPUM_0500 534 GGTGGTGACAACCACATATGCGATTAT------CATT---GCATTTA--- 571
BSNT_00887 584 CTT-TTGTAAAAC--CTAGCACGATT---TTTACGCCACTACTGCTTGA- 626
|| ||.|||.|| |.||.|..||| |||||..||| ||.||
BPUM_0500 572 -TTGTTTTAACACCGCCAGTATTATTTCGTTTACCTCAC-----CTAGAT 615
BSNT_00887 627 -----------------CCCTAAAATTCTAGGTGGTCTTTTGTATTTGGG 659
.||..|.|||...||||||.||.|.|||.|.||
BPUM_0500 616 GTGGAACAGATGGCAAGGCCGGAGATTTGGGGTGGTATTCTTTATCTAGG 665
BSNT_00887 660 AATTGTTTCAACCGCTTGTGCTTTTTTATTGTGGAACCG-CGGCTTACAA 708
.||..|.|||||.|||...||.||.||.||.|||||.|| .||||| |||
BPUM_0500 666 TATCATCTCAACAGCTCTAGCATTCTTTTTATGGAATCGAGGGCTT-CAA 714
BSNT_00887 709 TTATTAAATGCCTCAAGTGGAGGCCTCTTTTTCTTTTTTCAGCCTCTGGT 758
|||.|..||||||||||.||.||.||.||.||.||.|||||.||..|.||
BPUM_0500 715 TTAATGGATGCCTCAAGCGGTGGGCTGTTCTTTTTCTTTCAACCGATCGT 764
BSNT_00887 759 TGGAACCTTACTCGGATGGATTCTGCTT---GGAGAACAAATAGGCGGGA 805
.||..||.|.||.||.||| |||||| ||||||.|||| ||||
BPUM_0500 765 AGGTGCCATTCTTGGCTGG---CTGCTTTTGGGAGAAGAAAT----GGGA 807
BSNT_00887 806 -------CATT--TTGG-ATAGGTTCGTTTTTAATTCTTAGC-GGTGT-T 843
|||| |||| | ||| |.|.|| ||||.|| ||||| |
BPUM_0500 808 TTACGCTCATTCATTGGCA----TTC-TATGTA--TCTTCGCAGGTGTCT 850
BSNT_00887 844 TTA------TTAGTCATTAAA-GAGTAA 864
.|| |..|||| ||| ||.|||
BPUM_0500 851 ATACTGTGCTGCGTCA--AAAGGAATAA 876
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