Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03899 and BPUM_0495
See
Amino acid alignment /
Visit
BSNT_03899 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:24
# Commandline: needle
# -asequence dna-align/BSNT_03899___yrpG.1.24716.seq
# -bsequence dna-align/BPUM_0495.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03899___yrpG-BPUM_0495.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03899___yrpG-BPUM_0495.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03899___yrpG
# 2: BPUM_0495
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1138
# Identity: 478/1138 (42.0%)
# Similarity: 478/1138 (42.0%)
# Gaps: 506/1138 (44.5%)
# Score: 834.5
#
#
#=======================================
BSNT_03899___ 1 -----GTGGAGTATACCTATTTAGGGAGAACA--GGATTGCGGGTGAGCC 43
||..||||.||.| ||| ||.| ||||| |.|.
BPUM_0495 1 ATGAAGTATAGTAAACTT------GGA-AATAGTGGATT-------AACA 36
BSNT_03899___ 44 GTT--TA----TGTTTAGGCA----CGATGAATTTTGGAGTTGATACAGA 83
.|| || ||..||.|.| .|||.|||..|||.|.|.|.|.|.|
BPUM_0495 37 ATTAGTAAACTTGCATACGGAAATTGGATTAATCATGGTGGTAAGATAAA 86
BSNT_03899___ 84 CGAAAAAACTGCGTTCCGTATCATGGA-----TGAA----GCGCTTGATA 124
.|||.||||||| |||| || |||| ||.||||||.
BPUM_0495 87 TGAAGAAACTGC--------TCAT-GATTGTGTGAAAGCTGCTCTTGATG 127
BSNT_03899___ 125 ACGGCATT-CAATTTTTTGATACTGCCAATATTTACGGCTGGGGCAAAAA 173
..||.||| |.| ..|||||||||||..||.|||| ..||.|.|
BPUM_0495 128 TTGGTATTACGA-CGTTTGATACTGCTGATGTTTA-------TTCAGACA 169
BSNT_03899___ 174 CGCAGGATTGACAGAGA------GCA--TCATTGGAAAATGGTTTGCACA 215
| ||.|..||| ||||| ||| ||.|| ||||.||.|
BPUM_0495 170 C-CAAGGCTGA-AGAGATACTAGGCAGGTCTTT--AAAAGGGAT------ 209
BSNT_03899___ 216 AGGAGGACAGCGCC-GCGAGAAAG---------TTGTTCTGGCGACAAAA 255
|| |||.||||| |||| ||||||
BPUM_0495 210 ------------CCGGCGTGAAAGCATTGAACTTTGT-------ACAAAA 240
BSNT_03899___ 256 GTATATGAACCTATTTCTGATCCGAAAGACGGACCAAATGATATGAGGGG 305
||||.|.|.|| |.|||..|...||| .|||.||| ||.||
BPUM_0495 241 GTATGTCATCC--------AACCGGTACTGGGA-AAAACGAT---AGAGG 278
BSNT_03899___ 306 CTTGTCTCTATACAAAATCAGACGTCATCTGGAAGGATCACTG--AAGCG 353
.||.|| ||..||.||.| |||| |||..|||| |.||.
BPUM_0495 279 ATTATC-----ACGCAAGCATA--TCAT------GGAAAACTGTCATGCC 315
BSNT_03899___ 354 GCTT-----------CAGACAGATCATATCGA-ATTGTACCAAATGCATC 391
.||| ||.||.|||.||||.|| ||| ||| .||||| |
BPUM_0495 316 TCTTTGCAACGTTTACAAACGGATTATATTGATATT-TAC--TATGCA-C 361
BSNT_03899___ 392 ATA---TTGATAGGCGGACACCG----TGGGATGA---GATATGGGAAGC 431
|.| ||||| |..||..|| | |||.|| ||| |..|||
BPUM_0495 362 ACAGGTTTGAT---CCAACTACGCCTCT-GGAAGAAACGAT---GTTAGC 404
BSNT_03899___ 432 TTTTG-----------AGACTCAGGTTCGCTCCGGCAAAGTAGACTATAT 470
||||| |||| ..||.|||||..|||||||
BPUM_0495 405 TTTTGCTGATCTAGTAAGAC-----------AAGGAAAAGTGAACTATAT 443
BSNT_03899___ 471 TGGATCCAGTAATTTTGCAGGCTGG----------CATTTAGTTAAAGCG 510
||| .||||.| |..||| .|.|||.|..|.|.|
BPUM_0495 444 TGG----TGTAAGT-----GAGTGGACAGCAGAACAAATTACTCGAGGGG 484
BSNT_03899___ 511 CA-AGCT-----GA-AGCTGAAAAACGGCGATTCATGGGACTCGTCACTG 553
|| .||| || |||| |||.| |||.| ..|.|||.||...
BPUM_0495 485 CAGTGCTTGCCCGAGAGCT---AAATG----TTCCT-CTAATCGCCAGCC 526
BSNT_03899___ 554 AACAGCACAAGTATAGT-----TTATTAGAACGAACAGCTGAGA-----T 593
|||..|| |||.| |||| .|||| |
BPUM_0495 527 AACCTCA-----ATACTCCATGTTAT-------------GGAGAATCATT 558
BSNT_03899___ 594 GGAAGTG-------------CTGCCGGC-TGCACGGGATCTTGGTTTAGG 629
|.||||| |||||.|| ||.| ||| |||||
BPUM_0495 559 GAAAGTGATGTAATACCGACCTGCCAGCGTGAA--GGA-CTTGG------ 599
BSNT_03899___ 630 AGTAGTGGCGTGGAGTCCCCTTGCAGG---AGGGCTTCTTGGCGGGAAGG 676
|.|| |.|||...|||.|||| .|| ||||..||.|..|.||||.|
BPUM_0495 600 -GCAG-GTCGTATGGTCGCCTT--TGGCCCAGGGAATCCTTACTGGAAAG 645
BSNT_03899___ 677 ------CATTGAAAAGCAATGCCG--GAATT--CGTACAGCAAA---AAG 713
|.|.|||||.||.|.||| .|||| ||| ||.|| ||.
BPUM_0495 646 TATCTCCCTGGAAAATCACTTCCGACTAATTCACGT---GCTAACTCAAC 692
BSNT_03899___ 714 AGCAG-------ATTTAATTGAAAAACATCGTTTGCAACTCGAGAAATTT 756
.||.| .||| ||.||||||.|.|.| ||||.|..||
BPUM_0495 693 TGCTGGAAAACCTTTT--TTTAAAAACCTTGCT--CAACGCTGGA----- 733
BSNT_03899___ 757 TCAGATTTATGCAAAGAACT---AGGAGA---AAAAG---AAGCAAATGT 797
.||.|.|| ||.|.|| |||.|| ||||| ||||
BPUM_0495 734 --TGAATAAT---AACACCTTAGAGGCGATCCAAAAGCTTAAGC------ 772
BSNT_03899___ 798 GGCTTTG--GCAT--GGGTGCTGGCAAATCCAGTTTTAACTGCGCCGATC 843
||| |||| |.|| ||
BPUM_0495 773 ----TTGTCGCATCAGAGT------AA----------------------- 789
BSNT_03899___ 844 ATCGGACCACGAACGGTTGAGCAGCTGCGTGATACGATAAAAGCCGTTGA 893
BPUM_0495 789 -------------------------------------------------- 789
BSNT_03899___ 894 AATCAGTCTGGATAAGGAGGTTCTCCGCATGTTAAATGATATCTTTCCCG 943
BPUM_0495 789 -------------------------------------------------- 789
BSNT_03899___ 944 GACCTGGAGGAGAGACACCTGAGGCATACGCCTGGTGA 981
BPUM_0495 789 -------------------------------------- 789
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.