Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05687 and BPUM_0485

See Amino acid alignment / Visit BSNT_05687 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:17
# Commandline: needle
#    -asequence dna-align/BSNT_05687___ywjB.1.24716.seq
#    -bsequence dna-align/BPUM_0485.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05687___ywjB-BPUM_0485.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05687___ywjB-BPUM_0485.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05687___ywjB
# 2: BPUM_0485
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity:     317/633 (50.1%)
# Similarity:   317/633 (50.1%)
# Gaps:         198/633 (31.3%)
# Score: 610.5
# 
#
#=======================================

BSNT_05687___      1 ------ATGGAAAGAAAAACTGTGCTGTACATTGCTGTTTCATTGG---A     41
                           ..|.||||.||      ||       ||||.|||.||.||   |
BPUM_0485          1 TTGAGTCAGCAAAGGAA------GC-------TGCTTTTTTATGGGGCAA     37

BSNT_05687___     42 TG-----GGATG-----ATCGCAAAAGAAGATGGAAGCA-----TCGATT     76
                     ||     .||||     .|.||.|.|||.|||     ||     |.||||
BPUM_0485         38 TGAGTATCGATGGTTACTTAGCGAGAGAGGAT-----CACCGGCTTGATT     82

BSNT_05687___     77 GGCTGGATGAAT-----TTGAAGGTGAAGGTGACAACG-GCTACAGTGAT    120
                     ||     |.|||     ..||.||.||||..|| .||| .|||...|||.
BPUM_0485         83 GG-----TTAATAGGGACAGAGGGCGAAGAAGA-TACGAACTATGATGAC    126

BSNT_05687___    121 TTTTATCAGACTGTTGATACAGTCATTCTAGGGCGGGGCACATATGAGCA    170
                     ||||||..|.|.||||||||..|.||..|.|||||....||||||||.||
BPUM_0485        127 TTTTATGCGTCAGTTGATACGCTGATCATGGGGCGCAATACATATGAACA    176

BSNT_05687___    171 CGTT----AAAGTGCTAACACCGGTT---TTCCCATAT-CAGGATAAAAC    212
                     .|||    |    |||..||||.|.|   ||.||.||| .|||| ||.||
BPUM_0485        177 GGTTCTTCA----GCTGTCACCAGATGAATTTCCTTATGAAGGA-AAGAC    221

BSNT_05687___    213 CTGCTATGT-----------TTTTACAGGATCGCCCGACAGTTATCAAGA    251
                     .||.|||.|           .||||||.||..|.|.||.||         
BPUM_0485        222 TTGTTATATCATGTCACGTACTTTACAAGACAGTCTGAAAG---------    262

BSNT_05687___    252 TGAACATGTGACGTTTATCAATGAGGGAGCCAGAGCCT-TCACTGCCCGT    300
                      ||||   |.|    |||||.|...|.||  |.|.||| |||       |
BPUM_0485        263 -GAAC---TCA----TATCATTCGCGAAG--ATATCCTATCA-------T    295

BSNT_05687___    301 TTG-----------AAACAGGAAAAAGGCTCA-AACATCTGGATAGCTGG    338
                     |||           |||.|.||||.||| ||| .|.||||||||.|..||
BPUM_0485        296 TTGTGAGAAAACTTAAAAATGAAACAGG-TCAGCATATCTGGATTGTCGG    344

BSNT_05687___    339 CGGGGCAGAGCTTGTG-AATGACTTT-ATGAAAGAA---------GATG-    376
                     |||.|..||.||..|| |||  |||| ||.||||.|         |||| 
BPUM_0485        345 CGGCGGGGAACTGCTGCAAT--CTTTCATAAAAGCAGGATTGGTGGATGA    392

BSNT_05687___    377 ------CCATCGACGAATTCATCATCACTGTTATTCCCGTCGTTTTAGGA    420
                           ||.||.|       |||.|..||||.||       |.||  ||.
BPUM_0485        393 GCTTTACCTTCAA-------ATCGTACCTGTCAT-------GATT--GGG    426

BSNT_05687___    421 AGCGGCATCCCGCTGTTTCACGAACTAAC------AAATGAAA--CAAAA    462
                     ||.|||||.||.||||||       |..|      |.|||.||  |||..
BPUM_0485        427 AGAGGCATTCCTCTGTTT-------TCTCCAGTGGATATGGAAGCCAAGT    469

BSNT_05687___    463 CTGCGGTTAAAAG-----GGACA----AAACAATTTG--GACAAGCGGTT    501
                     .|.| .||.||||     .||||    ||.|||.|.|  ||.|.||..||
BPUM_0485        470 TTTC-ATTGAAAGAAGTACGACAATATAAGCAAATAGCTGAAATGCATTT    518

BSNT_05687___    502 CAGCTCCATTATGTAA-----GAGCATAA----    525
                     .|.||        |||     |||.||.|    
BPUM_0485        519 TATCT--------TAAAACAGGAGGATCACTGA    543


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