Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05687 and BPUM_0485
See
Amino acid alignment /
Visit
BSNT_05687 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_05687___ywjB.1.24716.seq
# -bsequence dna-align/BPUM_0485.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05687___ywjB-BPUM_0485.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05687___ywjB-BPUM_0485.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05687___ywjB
# 2: BPUM_0485
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 633
# Identity: 317/633 (50.1%)
# Similarity: 317/633 (50.1%)
# Gaps: 198/633 (31.3%)
# Score: 610.5
#
#
#=======================================
BSNT_05687___ 1 ------ATGGAAAGAAAAACTGTGCTGTACATTGCTGTTTCATTGG---A 41
..|.||||.|| || ||||.|||.||.|| |
BPUM_0485 1 TTGAGTCAGCAAAGGAA------GC-------TGCTTTTTTATGGGGCAA 37
BSNT_05687___ 42 TG-----GGATG-----ATCGCAAAAGAAGATGGAAGCA-----TCGATT 76
|| .|||| .|.||.|.|||.||| || |.||||
BPUM_0485 38 TGAGTATCGATGGTTACTTAGCGAGAGAGGAT-----CACCGGCTTGATT 82
BSNT_05687___ 77 GGCTGGATGAAT-----TTGAAGGTGAAGGTGACAACG-GCTACAGTGAT 120
|| |.||| ..||.||.||||..|| .||| .|||...|||.
BPUM_0485 83 GG-----TTAATAGGGACAGAGGGCGAAGAAGA-TACGAACTATGATGAC 126
BSNT_05687___ 121 TTTTATCAGACTGTTGATACAGTCATTCTAGGGCGGGGCACATATGAGCA 170
||||||..|.|.||||||||..|.||..|.|||||....||||||||.||
BPUM_0485 127 TTTTATGCGTCAGTTGATACGCTGATCATGGGGCGCAATACATATGAACA 176
BSNT_05687___ 171 CGTT----AAAGTGCTAACACCGGTT---TTCCCATAT-CAGGATAAAAC 212
.||| | |||..||||.|.| ||.||.||| .|||| ||.||
BPUM_0485 177 GGTTCTTCA----GCTGTCACCAGATGAATTTCCTTATGAAGGA-AAGAC 221
BSNT_05687___ 213 CTGCTATGT-----------TTTTACAGGATCGCCCGACAGTTATCAAGA 251
.||.|||.| .||||||.||..|.|.||.||
BPUM_0485 222 TTGTTATATCATGTCACGTACTTTACAAGACAGTCTGAAAG--------- 262
BSNT_05687___ 252 TGAACATGTGACGTTTATCAATGAGGGAGCCAGAGCCT-TCACTGCCCGT 300
|||| |.| |||||.|...|.|| |.|.||| ||| |
BPUM_0485 263 -GAAC---TCA----TATCATTCGCGAAG--ATATCCTATCA-------T 295
BSNT_05687___ 301 TTG-----------AAACAGGAAAAAGGCTCA-AACATCTGGATAGCTGG 338
||| |||.|.||||.||| ||| .|.||||||||.|..||
BPUM_0485 296 TTGTGAGAAAACTTAAAAATGAAACAGG-TCAGCATATCTGGATTGTCGG 344
BSNT_05687___ 339 CGGGGCAGAGCTTGTG-AATGACTTT-ATGAAAGAA---------GATG- 376
|||.|..||.||..|| ||| |||| ||.||||.| ||||
BPUM_0485 345 CGGCGGGGAACTGCTGCAAT--CTTTCATAAAAGCAGGATTGGTGGATGA 392
BSNT_05687___ 377 ------CCATCGACGAATTCATCATCACTGTTATTCCCGTCGTTTTAGGA 420
||.||.| |||.|..||||.|| |.|| ||.
BPUM_0485 393 GCTTTACCTTCAA-------ATCGTACCTGTCAT-------GATT--GGG 426
BSNT_05687___ 421 AGCGGCATCCCGCTGTTTCACGAACTAAC------AAATGAAA--CAAAA 462
||.|||||.||.|||||| |..| |.|||.|| |||..
BPUM_0485 427 AGAGGCATTCCTCTGTTT-------TCTCCAGTGGATATGGAAGCCAAGT 469
BSNT_05687___ 463 CTGCGGTTAAAAG-----GGACA----AAACAATTTG--GACAAGCGGTT 501
.|.| .||.|||| .|||| ||.|||.|.| ||.|.||..||
BPUM_0485 470 TTTC-ATTGAAAGAAGTACGACAATATAAGCAAATAGCTGAAATGCATTT 518
BSNT_05687___ 502 CAGCTCCATTATGTAA-----GAGCATAA---- 525
.|.|| ||| |||.||.|
BPUM_0485 519 TATCT--------TAAAACAGGAGGATCACTGA 543
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.