Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00478 and BPUM_0470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:18
# Commandline: needle
# -asequence dna-align/BSNT_00478___yccC.1.24716.seq
# -bsequence dna-align/BPUM_0470___yccC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00478___yccC-BPUM_0470___yccC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00478___yccC-BPUM_0470___yccC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00478___yccC
# 2: BPUM_0470___yccC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1274
# Identity: 741/1274 (58.2%)
# Similarity: 741/1274 (58.2%)
# Gaps: 271/1274 (21.3%)
# Score: 1980.0
#
#
#=======================================
BSNT_00478___ 1 ATGAA-AAAACAACGAATG----------CTCGTACTTTTTACCGCACTA 39
||||| ..||||| |||| .||.||||||
BPUM_0470___y 1 ATGAACGTAACAA--AATGGTTAGGTGCTGTCCTACTTT----------- 37
BSNT_00478___ 40 TTGTTTGTTTTTACCGGATGTTCACATTCTCCTGAAACAAAAGAA-TCCC 88
.|||| ||.|||| ||||.|||....|.||...|||.|.|| |.||
BPUM_0470___y 38 CTGTT--TTATTAC----TGTTGACAGCAGCATGTGCCAATACAAGTACC 81
BSNT_00478___ 89 CGAAAGAAAAAACGCAGACACAAAAAGTCTCTT----CGGCTTCTGCCTC 134
|.|.|||||||.| .|.||.|||| | |.||.||| ..
BPUM_0470___y 82 CAAGAGAAAAATC---AAAACGAAAA------TGAAACCGCATCT---AA 119
BSNT_00478___ 135 TGAAAAAAAGGATCTGCCAAAC-AC-----TAGAA--------------- 163
||||..|||||| |.|||| || |||||
BPUM_0470___y 120 TGAATCAAAGGA----CAAAACGACAGCCGTAGAAACGGGGAATAAGTCC 165
BSNT_00478___ 164 ----------------TTTTAGCGACAGGAGGCACGATAGC--------- 188
|.|||||.|||||.||.||.||.||
BPUM_0470___y 166 TTATCTAATATTAAAGTCTTAGCAACAGGCGGGACAATTGCCGGAAGTTC 215
BSNT_00478___ 189 ------TGGTGCCGATCAATCGAAAACCTCAACAACTGAATATAAAGCAG 232
||.|.||||| ||.||.|..||||||.|.|
BPUM_0470___y 216 AGACAGTGATACCGAT---------------ACGACAGGTTATAAATCTG 250
BSNT_00478___ 233 GTG---TTGTCGGCGTTGAATC-----ACTGATCGAGGCAGTTCCAGAAA 274
||| ||| |.||| |.|.||.|...||||||||.|..
BPUM_0470___y 251 GTGCACTTG--------GTATCGATAAAGTCATTGCCTCAGTTCCACAGC 292
BSNT_00478___ 275 TGAAGGACATTGCAAACGTCAGCGGCGAGCAGATTGTTAACGTCGGCAGC 324
|.|||||.|||||||||||.|.|||.||||||.|.|..|||||.|||||.
BPUM_0470___y 293 TAAAGGATATTGCAAACGTAACCGGTGAGCAGGTGGCGAACGTAGGCAGT 342
BSNT_00478___ 325 ACAAATATTGATAA-----------TAAAATATTGCTGAAGCTGGCGAAA 363
..||||.|.|||.| |||||| |.||.|||
BPUM_0470___y 343 GAAAATGTGGATGATGCTCTTCTTTTAAAAT-----------TAGCCAAA 381
BSNT_00478___ 364 C----GCATCAACCACTTGCTCGCTTCA--GATGAT---GTAGACGGAAT 404
| |.||.|| |.|||.| |||||| |||||.|||||
BPUM_0470___y 382 CGAGTGAATAAA---------CTCTTAAACGATGATCAAGTAGATGGAAT 422
BSNT_00478___ 405 CGTCGTGACTCATGGAACAGATACATTGGAGGAAACCGCTTATTTTTTGA 454
.||..|.||.||||||||||||||..|.||.||.||||||||.|||||.|
BPUM_0470___y 423 TGTTATCACACATGGAACAGATACGCTTGAAGAGACCGCTTACTTTTTAA 472
BSNT_00478___ 455 ATCTCACCGTGAAAAGTGATAAACCGGTTGTTATTGTCGGTTCGATGAGA 504
||||....||.||||||||||||||.|||||..|.||.||.||.|||
BPUM_0470___y 473 ATCTGGTTGTCAAAAGTGATAAACCAGTTGTAGTCGTTGGCTCAATG--- 519
BSNT_00478___ 505 CCTTCCA----CAGCCATCAGCGCTGATGGGCCTTCT-AACCTGTACAAT 549
|.|||| |.||.|||||.||.||| ||||..|| |||.||||..||
BPUM_0470___y 520 -CGTCCAGCATCTGCTATCAGTGCGGAT-GGCCCGCTAAACTTGTATCAT 567
BSNT_00478___ 550 GCAGTGAAAGTGGC---------AGGTGCCCCTGAGGCAAAAGGGAAAGG 590
||.||||||.|.|| ||.|||| |||||.|||||
BPUM_0470___y 568 GCGGTGAAAATTGCATCTACAAAAGCTGCC---------AAAGGTAAAGG 608
BSNT_00478___ 591 GACGCTTGT--TGTTC----TTAACGACCGGATTGCCTCAGCCCGATATG 634
| || ||.|| |.||.|||||.|||||.||.||.||||.|.
BPUM_0470___y 609 G------GTCATGGTCACGTTAAATGACCGAATTGCATCCGCTCGATTTA 652
BSNT_00478___ 635 TCACCAAAACAAACACAACCACAACAGATACATTTAAATCAGATGAA-AT 683
|.||.||.|||||.||.||||||||.|||.|.||.||.||...|||| ||
BPUM_0470___y 653 TTACGAAGACAAATACGACCACAACCGATTCCTTCAAGTCTCTTGAACAT 702
BSNT_00478___ 684 GGGCTTTGTCGGAACAATTGCCGATGA-----TATCTATTTTAATAATGA 728
||||...|.|||..||||||.|.||| |.|| .|||.||||.||
BPUM_0470___y 703 -GGCTACATTGGAGAAATTGCTGGTGAAGTGGTTTC--CTTTTATAACGA 749
BSNT_00478___ 729 GATTACCCGTAAGCATACG-----AAG-GACACGGATTTCTCG--GTTTC 770
....|||.|.||.|||||| ||| || |||| | ||.||
BPUM_0470___y 750 ACCGACCAGAAAACATACGTCTGAAAGTGA-----ATTT---GATGTATC 791
BSNT_00478___ 771 TAATCTTGATGAGCTGCCTCAGGTTGACATTATCTATGGATACCAAAATG 820
.||..|..|.||..|.||.||.||.||.|||.|.||.||.||.|||||||
BPUM_0470___y 792 AAACATAAAGGAATTACCACAAGTCGATATTTTATACGGCTATCAAAATG 841
BSNT_00478___ 821 ACGGAAGCTACCTGTTTGACGCTGCTGTAAAAGCCGGAGCAAAGGGGATT 870
|...||..|||.|||.|||.||.||.||||||||.|||||.||.|||||.
BPUM_0470___y 842 ATCAAAAATACATGTATGATGCAGCAGTAAAAGCAGGAGCGAAAGGGATA 891
BSNT_00478___ 871 GTATTTGCCGGTTCTGGGAACGG------GTCTTTATCTGACGCAGCCGA 914
||..||||||...|.||.||.|| ||| |.|.|| ||||..
BPUM_0470___y 892 GTCGTTGCCGCAGCAGGCAATGGAACGATGTC---AACAGA---AGCCAT 935
BSNT_00478___ 915 AAAAGGGGCGGACAG-CGCAGTCAAAAAAGGCGTCACAGTGGTGCGCTCT 963
.|||||||| .|||| .||.||.||.||||..||....||.|||.|.||.
BPUM_0470___y 936 CAAAGGGGC-AACAGATGCCGTGAAGAAAGATGTAGTCGTCGTGAGATCA 984
BSNT_00478___ 964 ACCCGCACGGGAAATGGTGTCGTCACACCA--AACCAAGACT--ATGCGG 1009
|.|||..|.||.|||||..|.||.|| ||| | ||.|.| |||..|
BPUM_0470___y 985 AGCCGTGCAGGCAATGGGATTGTGAC-CCATGA---AAAAATGGATGATG 1030
BSNT_00478___ 1010 AAAAGGACTTGCTGGCATCGAACTCTTTAAACCCCCAAAAAGCACGGATG 1059
||.|..||||..|..||||..|.||.||.|||||.|||||||||||.||.
BPUM_0470___y 1031 AACATCACTTTGTCTCATCAGATTCATTGAACCCACAAAAAGCACGTATT 1080
BSNT_00478___ 1060 TTGCTGATGCTTGCGCTTACCAAAACAAATGATCCTCAA--AAAATCCAA 1107
.||||.|||||.||.||.||.||.|||||.|||| ||| |||.|.||.
BPUM_0470___y 1081 CTGCTTATGCTCGCTCTAACGAAGACAAAAGATC--CAAGTAAAGTGCAG 1128
BSNT_00478___ 1108 GCTTATTTCAATG---AGTATTGA 1128
.|.|.|| ||| ||||||.|
BPUM_0470___y 1129 ACATTTT---ATGAAAAGTATTAA 1149
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