Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00474 and BPUM_0465
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:18
# Commandline: needle
# -asequence dna-align/BSNT_00474___lmrB.1.24716.seq
# -bsequence dna-align/BPUM_0465___lmrB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00474___lmrB-BPUM_0465___lmrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00474___lmrB-BPUM_0465___lmrB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00474___lmrB
# 2: BPUM_0465___lmrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1540
# Identity: 985/1540 (64.0%)
# Similarity: 985/1540 (64.0%)
# Gaps: 206/1540 (13.4%)
# Score: 2851.5
#
#
#=======================================
BSNT_00474___ 1 -TTGGAAACAACAGCTAAAGCA------TCTCAGCAATACAAAGTGATGC 43
| |||..|||||| ||||| ||||| .||.|.|| .|.|||
BPUM_0465___l 1 AT--GAACAAACAGC--AAGCAGCAAATTCTCA--TATTCGAA-CGCTGC 43
BSNT_00474___ 44 CGATTATGATTTCCTT-------GCTGTTGGCCGGTTTTATCGGCATGTT 86
|.|||||.||.||.|| ||| ||||||||.||..||||
BPUM_0465___l 44 CCATTATTATCTCATTTATCACAGCT-------GGTTTTATTGGTCTGTT 86
BSNT_00474___ 87 CAGTGAAACAGCGCTGAATATTGC---------GTTAAC---CGACCTTA 124
|||||||||.||.||.|||||.|| .||||| .|||.||
BPUM_0465___l 87 CAGTGAAACTGCACTCAATATGGCACTAAGAAGCTTAACGTTAGACTTT- 135
BSNT_00474___ 125 TGAAGGAATTGAACATTACAGCGGCAACCGTCCAATGGTTAACGACGGGC 174
|||||||| ||||.|.||.|..||.|||.||||.||.||.
BPUM_0465___l 136 ----GGAATTGA-------AGCGACGACAGCTCAGTGGCTAACAACAGGA 174
BSNT_00474___ 175 TACCTGCTTGT----ACTCGGTATCCTTGTTCCTGTTTCAGGACTGCTGT 220
|| .||.| |||||||||.||.||.||..||||||||||..|..
BPUM_0465___l 175 TA----TTTATTAACACTCGGTATTCTCGTACCAATTTCAGGACTTATTC 220
BSNT_00474___ 221 TGCAGTGGTTCACAACAAGACAGCTTTTTACCGTGTCACTTATCTTTTCA 270
|.||.|||||.|||||||||||||||||.|....|||.||..|||||||.
BPUM_0465___l 221 TTCAATGGTTTACAACAAGACAGCTTTTCATGACGTCGCTCGTCTTTTCG 270
BSNT_00474___ 271 ATTTTAGGTACATTCATTGCGGCGCTTGCGCCGAG-CTTCTCGT-TTTTA 318
||..|.||.||.||.||.||.||..||||||| || ||| |.|| |||||
BPUM_0465___l 271 ATCATTGGAACTTTTATCGCAGCAGTTGCGCC-AGTCTT-TAGTATTTTA 318
BSNT_00474___ 319 TTAGCGGCAAGGATCGTTCAGGCACTTGGAACCGGTCTTT--TACTGCCC 366
.|.|.||||.|..||||.||||||.|.|||||.| |.|| |.||.||.
BPUM_0465___l 319 ATGGTGGCACGTGTCGTACAGGCAGTCGGAACAG--CATTGCTTCTTCCA 366
BSNT_00474___ 367 CTAATGTTTAACACAATCTTGGTGATTTTCCCGCCTCATAAACGGGGTGC 416
.|.|||||.||.||.||.||||||||..||||.|||||||||||.| ||
BPUM_0465___l 367 TTGATGTTCAATACGATTTTGGTGATCATCCCTCCTCATAAACGAG--GC 414
BSNT_00474___ 417 CG--CAATGGGAACGATCGGGCTTGTCATTATGTTCGCGCCCGCCATCGG 464
.| |.|||||.|..||.||.|||||.||.|||||.||.||.||..|.||
BPUM_0465___l 415 AGATCTATGGGGATTATAGGTCTTGTGATCATGTTTGCACCAGCTGTTGG 464
BSNT_00474___ 465 CCCAACTTTCTCAGGATTGGTTCTGGAGCAT--CTCAACTGGCACTGGAT 512
||||||..||||.||..|..||.||.| || ||.|..|||||.|||||
BPUM_0465___l 465 CCCAACAGTCTCTGGTCTTATTTTGAA--ATCGCTGACTTGGCATTGGAT 512
BSNT_00474___ 513 TTTTTGGATCTCTCTTCCG---TTCCTTGTGCTGGCGCTTGTTTTCGGTA 559
|||.|||||.||.|||||| ||..| |||| ||.||.||.||.|||.
BPUM_0465___l 513 TTTCTGGATTTCACTTCCGCTATTAAT--TGCT-GCACTCGTCTTTGGTT 559
BSNT_00474___ 560 TCGCATAT----ATGCAGAATGTATCTGAAACGACAAAGCCGAAAATCGA 605
| ||| |||||.|||.|..|.|||.|.||||..|||||||||||
BPUM_0465___l 560 T----TATTTTCATGCAAAATATTACAGAACCAACAAGACCGAAAATCGA 605
BSNT_00474___ 606 TGTATTGTCTATCATCCTGTCGACGATTGGCTTCGGCGGCATTGTGTTCG 655
..|.||.||.||..|.||.||.||.|||||.|||||.||.|||||||.||
BPUM_0465___l 606 CATTTTATCGATTGTGCTTTCAACCATTGGTTTCGGAGGAATTGTGTACG 655
BSNT_00474___ 656 GATTCAGCAACGCGGGTGAAGGCTCCGGGGGATGGTCCAGCCCGACTGTT 705
|.||.||.|..||.|||||||| |||.||.|||..|||...|..|||.
BPUM_0465___l 656 GCTTTAGTAGTGCCGGTGAAGG---CGGCGGCTGGGGCAGTATGCATGTG 702
BSNT_00474___ 706 ATCGTGTCGCTG--ATTGTCGGCGTTGTC---GGCCTTATCCTATTTTCA 750
||||| || |||||.|..|.|||| ||..||.|..||||.||.
BPUM_0465___l 703 ATCGT-----TGCAATTGTAGTAGGTGTCATTGGGATTCTTGTATTCTCT 747
BSNT_00474___ 751 ATCCGCCAGCTGACAATGAAGCAGCCGATGATGAACCTCCGTGCGTTCAA 800
.||.|.|||.|||..||||||.|.||||||.|||||.|..|..||||.||
BPUM_0465___l 748 CTCAGACAGTTGAATATGAAGGAACCGATGCTGAACTTAAGCCCGTTTAA 797
BSNT_00474___ 801 ATACCCAATGTTTAT-TTTGGGT-----GTGATCATGGTGTTCATTTGTA 844
|||.||.||||||.| .|||||| .|.|||.|.||| ||||
BPUM_0465___l 798 ATATCCGATGTTTGTCATTGGGTTACTGCTAATCTTAGTG------TGTA 841
BSNT_00474___ 845 TGATGGTCATTCTGTCATCTATGCTGCTTCTGCCGATGTATCTGCAAGGC 894
|||||||.||.||.||..|||||.||.||.||||..|.|||.|||||...
BPUM_0465___l 842 TGATGGTGATGCTATCTGCTATGATGATTTTGCCATTATATTTGCAAACA 891
BSNT_00474___ 895 GGCTTAGTCCTGACTGCATTTGCATCTGGTCTTGTTCTCTTGCCGGGCGG 944
..|||.|..||.||..|.|||.||.|.|||.|..|.||.|||||.||.||
BPUM_0465___l 892 TCCTTGGCACTAACGACCTTTACAGCAGGTTTAATGCTATTGCCAGGTGG 941
BSNT_00474___ 945 TATTTTAAATGGATT--TATGTCC---CCTGTTACAGGCCGCTTGTTCGA 989
.|||.|.||.||..| |||.||| |.|| ||..|.|||||.||
BPUM_0465___l 942 AATTATCAACGGTCTGCTATCTCCAATCATG-----GGTGGATTGTTTGA 986
BSNT_00474___ 990 TAAATACGGGCCGAAATGGCTTGTCATTCCGGGATTTGTGATTGT----- 1034
|||.|.|||.||||||||||||||.|||||.||..|||.|||.||
BPUM_0465___l 987 TAAGTTCGGACCGAAATGGCTTGTGATTCCAGGGCTTGCGATCGTTGCAG 1036
BSNT_00474___ 1035 CACTGTTGTACTATGGTT---CT--TCTCAAATGT---TACGACCGCTTC 1076
||..|.||| || |||| || ||| ||.||| ||| |.||.||
BPUM_0465___l 1037 CAACGATGT--TA-GGTTTCACTAATCT-AAGTGTGAATAC-ATCGATT- 1080
BSNT_00474___ 1077 AACGGCTGTGCTGATTATCATCCTGCACACCTGC-TTGATGATCGGGATT 1125
||.| ..|||.|.|.|||.|||| .|.| ||.|||.|.||.||.
BPUM_0465___l 1081 ---GGAT----ACATTGTGACCCTTCACA-TTACGTTAATGGTTGGAATC 1122
BSNT_00474___ 1126 TCTATGATCATGATGCCTGCGCAAACAAACGGTTTAAACCAACTGCCGCG 1175
.|.|||||.|||||||||||.||||||||.||.|||||.||.|||||||.
BPUM_0465___l 1123 GCGATGATAATGATGCCTGCACAAACAAATGGATTAAATCAGCTGCCGCC 1172
BSNT_00474___ 1176 CGAATTTTATCCAGACGGCACCGCCATTATGAACACGCTGCAGCAAATGG 1225
.||..|.|||||..|.||.||.||.||||||||.||..|||||||..|..
BPUM_0465___l 1173 AGAGCTATATCCGCATGGTACAGCAATTATGAATACATTGCAGCAGGTAT 1222
BSNT_00474___ 1226 CCGGCGCTATCGGAACAGCGGTTG------CGGTCAGCATT-ATGGCTGC 1268
|.||.||.||.||.||.||||||| ||.|| |.|| || |
BPUM_0465___l 1223 CAGGAGCCATTGGTACTGCGGTTGGTATTTCGATC--CTTTCAT-----C 1265
BSNT_00474___ 1269 AGG---CC--AGCATGATTATATGAGTACAGTTAAAA--------ACCCT 1305
||| || ||| |.|||| .|||| |.|||
BPUM_0465___l 1266 AGGAACCCGTAGC-----TTTATG--------GAAAATGTAGCTGATCCT 1302
BSNT_00474___ 1306 GCCGATCCGGCAGTCATC--CCGCAAGCTTTGACAGCAGGCGTACAGCAC 1353
||..||||| |...||| |.||..||.||.|||...|||||.|||||.
BPUM_0465___l 1303 GCAAATCCG--ATGAATCAGCTGCTCGCCTTTACAAATGGCGTCCAGCAT 1350
BSNT_00474___ 1354 GCATTTGTGTTTGCAATGATTGTTGCCATTATCGGTTTAATTGGCGCTTT 1403
||||||.|.|||||..||||..|..||.|.||.|||.|||||..||||||
BPUM_0465___l 1351 GCATTTATCTTTGCTGTGATCATGACCGTCATTGGTCTAATTATCGCTTT 1400
BSNT_00474___ 1404 CTTTATGAAGCGCGTGAAGGTAGATCATTAA--------- 1434
|||.||.||.||.|||||||||||.||..||
BPUM_0465___l 1401 CTTCATTAAACGAGTGAAGGTAGAACAGCAAGTTTCATAA 1440
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