Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01347 and BPUM_0453
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:56
# Commandline: needle
# -asequence dna-align/BSNT_01347___acoC.1.24716.seq
# -bsequence dna-align/BPUM_0453___acoC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01347___acoC-BPUM_0453___acoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01347___acoC-BPUM_0453___acoC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01347___acoC
# 2: BPUM_0453___acoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1291
# Identity: 792/1291 (61.3%)
# Similarity: 792/1291 (61.3%)
# Gaps: 245/1291 (19.0%)
# Score: 2299.0
#
#
#=======================================
BSNT_01347___ 1 ATGGCGGTAAAAGTAGTGATGCCAAAATTGGGAATGGCCATGAAACAAGG 50
|||||.||..||||.||||||||.||||||||.|||.|.||||||.||
BPUM_0453___a 1 ATGGCTGTCGAAGTTGTGATGCCTAAATTGGGCATGTCGATGAAAGAA-- 48
BSNT_01347___ 51 GGAA--GTATCGATATGGAATAAAAAAGTAGGCGACCCGGTTGAAAAGGG 98
|||| |||||..|.|||||||||.|.||.||.||..|.||..|.||.||
BPUM_0453___a 49 GGAACGGTATCTGTCTGGAATAAAGAGGTCGGTGAGACCGTAAATAAAGG 98
BSNT_01347___ 99 AGAAAGCATTGCCAGCATTCAA-TCGGAGAAAATTGAAATGGAGATCGAA 147
||||||||||||.|||| |||| ||.||.|||||||||||||||||.|||
BPUM_0453___a 99 AGAAAGCATTGCAAGCA-TCAACTCAGAAAAAATTGAAATGGAGATTGAA 147
BSNT_01347___ 148 GCGCCTGAAAAAGGAACGCTGATCGATATCAAAGTGAAAGAGGGAGAAGA 197
.|.||||...|||||||..|..|.|||||.||||||...||||||||||.
BPUM_0453___a 148 TCACCTGCTGAAGGAACCATATTGGATATAAAAGTGCCCGAGGGAGAAGG 197
BSNT_01347___ 198 GGTTCCGCCCGGCACAGCGATCTGCTATATCGGGGACGCCAATGA----G 243
.||.|||||.|||||.|..||||||||||||||.||.|..||||| |
BPUM_0453___a 198 TGTACCGCCTGGCACGGTCATCTGCTATATCGGTGAAGGAAATGAACAGG 247
BSNT_01347___ 244 TCGGTGCAGGAAGAGGCGAGCGCGCCTGTTGCTGAAGACAATATGCCGCA 293
||| |||||.|| .||||.| |
BPUM_0453___a 248 TCG----AGGAAAAG------------------AAAGAAA---------A 266
BSNT_01347___ 294 AGCCGTTCAGCCCGTCAAACAAGAAAACAAACCCGCAGCCTCCAAAAAAG 343
||.|.|.|.||| ||||||| ||.||||
BPUM_0453___a 267 AGGCCTGCCGCC-----------AAAACAA-------------AAGAAAG 292
BSNT_01347___ 344 ATCGAATGAAAATATCTCCAGTCGCCAGGAAAATAGCAGAAA-----AAG 388
|..||||.|||||.||.||.||.||..|.||.||.||..||| ||.
BPUM_0453___a 293 AGAGAATTAAAATCTCCCCTGTTGCACGTAAGATTGCTCAAAGTGCTAAT 342
BSNT_01347___ 389 CAGGATTAGACCTAAAACAACTGAAAGGAACTGGACCAGGCGGACGAATC 438
|.||| ||..|.| |.||.|.|| |||||.||.||||..||..|||||
BPUM_0453___a 343 CTGGA-TATTCAT-ACACTAGTG---GGAACAGGTCCAGATGGGAGAATC 387
BSNT_01347___ 439 GTGAA---GGATG----ACGTAACAAAGGCTCTTGCTG----AACAGAAA 477
..||| ||||| .|| |||.|||.||| ||.|||||
BPUM_0453___a 388 ACGAAAGCGGATGTGCTTCG-------GGCACTTCCTGATGAAAAAGAAA 430
BSNT_01347___ 478 A--AAGATCAGGCAAAGCCTGTGTCGGAGC--AGAAAGCGCAGGAAATC- 522
| ||.|.||...||| .||.| |.||||| |||
BPUM_0453___a 431 AACAAAAACAACAAAA---------TGAACCAACAAAGC-------ATCA 464
BSNT_01347___ 523 -CCGGTGACAGGCATGA----GAAAGGTC-ATCGCTGCCCGAATGCAGGA 566
||.||.| |||||| |||| .| ||.||..|..|||||..|||
BPUM_0453___a 465 GCCAGTCA---GCATGATGCGGAAA--ACAATTGCCTCAAGAATGATGGA 509
BSNT_01347___ 567 AAGCTTGGCAAAC-AGCGCGCAGCTGACGATCACGATGAAAGCTGATATC 615
||||.| |||||| ||.||.||..|.||.||.|||||||||||.||..|.
BPUM_0453___a 510 AAGCCT-GCAAACAAGTGCACAATTAACCATTACGATGAAAGCGGACGTG 558
BSNT_01347___ 616 ACCAAGCTTGCCACTCTT-CAAAAACAGCTTTCACCAACTGCGGAA-GAG 663
||.||.| ||.||..||| |||.||||||| ||| ||.
BPUM_0453___a 559 ACAAAAC-TGACAAACTTACAACAACAGCT-------------GAATGAA 594
BSNT_01347___ 664 A------------GATACGGCACAAAACTGACGATCACTCATTTTGTCTC 701
| |.||||..|||||..||||.|||||..|||||.||.|
BPUM_0453___a 595 ACAGCCATCGCACGTTACGAGACAAAGTTGACCATCACCGATTTTATCGC 644
BSNT_01347___ 702 AAGAGCCGCCGTTCTCGCTCTGCAAGCTCACCCTGTGCTGAACAGCTTTT 751
.|.|||.||..|.||..|..||..||..||.||||...||||.||
BPUM_0453___a 645 CAAAGCAGCGATCCTTTCGTTGTTAGAACATCCTGCAATGAATAG----- 689
BSNT_01347___ 752 ATCAAAATGAGCGCATCATCAC----------ACATCCCC-------ATG 784
|||| .|||||.|| |.| || |||
BPUM_0453___a 690 -TCAA--------TATCATAACGGAGTTGTGGAAA---CCTTTGAGAATG 727
BSNT_01347___ 785 TGCACCTTGGTATGGCTGTAGCCTTGGAAAATGGCTTAGTGGTGCCTGTC 834
|.||.|||||.||.||||..||.||.||.||.||.||.|..||.||.|||
BPUM_0453___a 728 TTCATCTTGGGATTGCTGCTGCGTTAGATAACGGATTGGCTGTACCAGTC 777
BSNT_01347___ 835 ATCCGCCATGCTGAAAAGCTATCGCTGATAGAACTGGC-----TCAATCT 879
||.|..|||||.||...|.||.||||||||||.||||| .||.|
BPUM_0453___a 778 ATTCAGCATGCGGAGCGGTTAACGCTGATAGAGCTGGCGAAGAGCATT-- 825
BSNT_01347___ 880 ATCTCAGAAA----ATGCCAAAAAAGCACGCGAGGGACGTGCGGGAAGC- 924
||| |||.||||||||||||.||.||| ||||
BPUM_0453___a 826 -------AAATTGTATGGCAAAAAAGCACGAGAAGGA--------AAGCT 860
BSNT_01347___ 925 -------GAAGAACTGCA-AGGATCTACTTTCTCCATTACAAACCTTGGC 966
||.|||.| || |||.|||||.||..||||.||.||.|||||.
BPUM_0453___a 861 TCTTCATGACGAAAT-CAGAGGTTCTACCTTTACCATCACCAATCTTGGA 909
BSNT_01347___ 967 GCGTTTGGAGTTGAGCATTTCACACCGATACTAAATCCGCCGGAAACAGG 1016
||||.|||.||.|||||||||||.||.||..|.||||||||||||.|.||
BPUM_0453___a 910 GCGTATGGCGTAGAGCATTTCACGCCAATTTTGAATCCGCCGGAAGCGGG 959
BSNT_01347___ 1017 CATTCTCGGCATCGGAGCAAGCTATGACACGCCGGTGTATCAAGGGGAGG 1066
.||.||.||.||||||.|||..||||||||.||.||.||||.||.|||.|
BPUM_0453___a 960 GATCCTTGGTATCGGAACAATGTATGACACCCCTGTTTATCGAGAGGATG 1009
BSNT_01347___ 1067 AGATCGT-CAGAAGCACGATCCTGCCACTCAGCCTGACATTTGATCACAG 1115
| ||.|| .|.|.|.||.|||.||||||||||.||.||.|||||.|||
BPUM_0453___a 1010 A-ATTGTGTAAAGGAACCATCTTGCCACTCAGTCTTACGTTTGACCAC-- 1056
BSNT_01347___ 1116 AGCGTG--TGACGGCGCCCCTGCCGCTGCA--TTCCTGAAGGCGATGAAA 1161
.||||| .|||||.||.|||||..||||| ||..|.|| ||.|.|||
BPUM_0453___a 1057 CGCGTGCTGGACGGGGCACCTGCGTCTGCATTTTTATCAA--CGGTCAAA 1104
BSNT_01347___ 1162 ACATATTTGGAAGAACC-----CGCAGCATTAATTTTATAG 1197
.||.|.||.|||||||| | |||| .||||||||
BPUM_0453___a 1105 GCACACTTAGAAGAACCAATATC----CATT-CTTTTATAG 1140
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