Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00801 and BPUM_0443
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:34
# Commandline: needle
# -asequence dna-align/BSNT_00801___rsbU.1.24716.seq
# -bsequence dna-align/BPUM_0443___rsbU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00801___rsbU-BPUM_0443___rsbU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00801___rsbU-BPUM_0443___rsbU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00801___rsbU
# 2: BPUM_0443___rsbU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1035
# Identity: 765/1035 (73.9%)
# Similarity: 765/1035 (73.9%)
# Gaps: 54/1035 ( 5.2%)
# Score: 2744.0
#
#
#=======================================
BSNT_00801___ 1 GTGGATTTTAGGGAGGTTATTGAGCAGCGGTATCATCAGCTGCTTAGCCG 50
.|||||||||.||||||.||.|||||||||||.|||||||||||.||.||
BPUM_0443___r 1 ATGGATTTTAAGGAGGTAATGGAGCAGCGGTACCATCAGCTGCTCAGTCG 50
BSNT_00801___ 51 ATATAT-AGCCGAATTAACAGAAACATCTTTATATCAAGCCCAAAAATTC 99
.||||| || .||.|||||.||||||||..|.||||||||.||||||||.
BPUM_0443___r 51 TTATATCAG-TGATTTAACTGAAACATCGCTTTATCAAGCTCAAAAATTT 99
BSNT_00801___ 100 AGCCGAAAAACAATCGAGCACCAAATTCCTCCGGAAGAAATCATCAGCAT 149
|||||.|||||.||.|||||.|||||.|||||.||||||||..|.||..|
BPUM_0443___r 100 AGCCGTAAAACCATTGAGCATCAAATACCTCCTGAAGAAATAGTGAGTGT 149
BSNT_00801___ 150 TCACAGAAAAGTGCTGAAGGAGCTGTATCCAAGTCTCCCGGAAGATGTGT 199
||||.||||||||.|..|||||||.||.||...|.|.|||||||||||.|
BPUM_0443___r 150 TCACCGAAAAGTGATTCAGGAGCTTTACCCTGATTTGCCGGAAGATGTTT 199
BSNT_00801___ 200 TTCATTCGCTGGATTTTTTAATAGAAGTCATGATTGGTTATGGAATGGCT 249
|||||||.||.||.||.|||||.||||||||||||||.||.|||.|.||.
BPUM_0443___r 200 TTCATTCACTAGACTTCTTAATTGAAGTCATGATTGGGTACGGACTTGCC 249
BSNT_00801___ 250 TATCAGGAGCATCAAACCCTTAGAGGGATACAGCAGGAAATCAAATCAGA 299
||||||||.|||..|||.||||||||.||.|||||.|||||.||||||||
BPUM_0443___r 250 TATCAGGAACATTTAACACTTAGAGGCATCCAGCAAGAAATTAAATCAGA 299
BSNT_00801___ 300 AATTGAAATCGCGGCAAATGTCCAGCAGACGCTGCTCGGAACTAAAGTTC 349
|||||||||.||.||||||||.|||||.||.||.||.|.|||.|||.|||
BPUM_0443___r 300 AATTGAAATTGCTGCAAATGTTCAGCAAACCCTTCTGGAAACGAAAATTC 349
BSNT_00801___ 350 CTCAGGAGGAAG---CGCTGGATATCGGCGCCATCAGTGTTCCCGCTAAA 396
|||.||| || ||.|.|||||.||.||.||||||||.||.||.|||
BPUM_0443___r 350 --CAGAAGG-AGATACGTTCGATATTGGGGCGATCAGTGTACCGGCAAAA 396
BSNT_00801___ 397 CAGATGAGCGGTGATTACTACCACTTTGTCAAAGACAAGGAATCCATCAA 446
||||||||.||.|||||.|||||||||||.|..||..|.||..|.||.||
BPUM_0443___r 397 CAGATGAGTGGAGATTATTACCACTTTGTGACGGATCACGATACGATTAA 446
BSNT_00801___ 447 TATTGCAATCGCGGACGTGATCGGAAAAGGCATTCCAGCGGCTTTATGCA 496
|||.||.|||||.||.||.||.|||||.||.||.||.||.||..|.||.|
BPUM_0443___r 447 TATCGCGATCGCAGATGTCATTGGAAAGGGAATCCCGGCTGCGCTTTGTA 496
BSNT_00801___ 497 TGTCCATGATTAAATACGCGATGGACTCTTTGCCAGA-------AACGGG 539
||||.|||||.|||||.||||||||.||.|||||||| |.|||
BPUM_0443___r 497 TGTCGATGATCAAATATGCGATGGATTCCTTGCCAGAGTCAGGGAGCGG- 545
BSNT_00801___ 540 CATACACCCTTCTCAAGTGCTGAAAAATTTGAATCGTGTTGTTGAACAAA 589
|||..||.||||||||||||...|.|||||||||||.||.||||
BPUM_0443___r 546 ------CCCAACTAAAGTGCTGAAAACCCTAAATCGTGTTGTCGAGCAAA 589
BSNT_00801___ 590 ACGTTGATGCCAGTATGTTTATTACGATGTTTTATGCGAATTACAATATG 639
||||.||..|.|||||||||||.||.||||||||||..|..||.||||..
BPUM_0443___r 590 ACGTAGACCCAAGTATGTTTATCACCATGTTTTATGGCAGCTATAATAAA 639
BSNT_00801___ 640 GACAATCATCAATTTACATATGCTTCAGCGGGACATGAACCGGG---ATT 686
||.|..|||.||||||.||||||.||.||.||.|||||.||||| .||
BPUM_0443___r 640 GAAACACATGAATTTAAATATGCATCGGCTGGTCATGAGCCGGGCTTTTT 689
BSNT_00801___ 687 CTATT---ATTCTCAAAAG-GA--CAACACGTTTTACGATTTAGAGGCCA 730
||||| || |||| || ||| ||||||||||||||.||.|
BPUM_0443___r 690 CTATTGCAAT-----AAAGAGAATCAA----TTTTACGATTTAGATGCAA 730
BSNT_00801___ 731 AAGGACTCGTTCTCGGCATCTCGCAGGACTATGACTACAAACAATTCGAT 780
|||||||.||.||.||.|||.|.|..||.|.|||.||.||.||.|..||.
BPUM_0443___r 731 AAGGACTTGTCCTTGGGATCGCACCAGATTTTGATTATAAGCAGTATGAG 780
BSNT_00801___ 781 CAGCATCTGGAAAAGGGCGATATGATTGTTTTATTTTCTGATGGCGTCAC 830
.||||||||||....||.||||||.|..|.|||||.||||||||.|||||
BPUM_0443___r 781 AAGCATCTGGACGTAGGAGATATGGTGATCTTATTCTCTGATGGTGTCAC 830
BSNT_00801___ 831 AGAATGCAGAACGGAAAACGGTTTCTTGGAGCGTCCTGATCTGCAGAA-- 878
|||||..|.|.|.||..||||.|||||.||||||...|||.| || ||
BPUM_0443___r 831 AGAATCTAAATCAGAGGACGGCTTCTTAGAGCGTGAGGATAT-CA-AAGC 878
BSNT_00801___ 879 GCTCAT-TGAG-GAACATATGTGTTCC---TCCGCGCAGGAAATGGTCAA 923
|||||| |.|| ||||.|| ||| ||.||.|||||||||||..|
BPUM_0443___r 879 GCTCATATCAGAGAACCTA-----TCCTATTCAGCTCAGGAAATGGTGGA 923
BSNT_00801___ 924 AAACATTTATGACAGCCTCCTCAAATTGCAGGATTTTCAGCTTCACGATG 973
...|||.|||||||||.|.||.||..||||.||.||.|||||.||.||||
BPUM_0443___r 924 TGCCATCTATGACAGCTTACTTAAGCTGCAAGAATTCCAGCTGCATGATG 973
BSNT_00801___ 974 ATTTTACGTTAATTGTTTTGCGGAGAAAGGTTTAA 1008
|||||||||||.||||..|....||.||||||||.
BPUM_0443___r 974 ATTTTACGTTACTTGTCCTTAAAAGGAAGGTTTAG 1008
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