Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00798 and BPUM_0440

See Amino acid alignment / Visit BSNT_00798 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:34
# Commandline: needle
#    -asequence dna-align/BSNT_00798___rsbR.1.24716.seq
#    -bsequence dna-align/BPUM_0440___rsbR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00798___rsbR-BPUM_0440___rsbR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00798___rsbR-BPUM_0440___rsbR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00798___rsbR
# 2: BPUM_0440___rsbR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 873
# Identity:     599/873 (68.6%)
# Similarity:   599/873 (68.6%)
# Gaps:          90/873 (10.3%)
# Score: 1949.5
# 
#
#=======================================

BSNT_00798___      1 TTGATGTCGAATCAGA--CTGTATACCAGTTCATTGC-CGAAA--ATCAA     45
                        |||||||||||.|  .||| ||.|  ||  |||| .||||  |||||
BPUM_0440___r      1 ---ATGTCGAATCATATCGTGT-TAGC--TT--TTGCAAGAAAGCATCAA     42

BSNT_00798___     46 AATGAACTGCTCCAATTGTGGACTGACACACTAAAAGAATTAAGCGAGCA     95
                     ||.|||.|.....||..||||||.||||...|||||..|.|..|.||..|
BPUM_0440___r     43 AAGGAATTAGAAAAAGAGTGGACGGACATTTTAAAACGACTCGGAGAAAA     92

BSNT_00798___     96 AGAATCCTATCA----GCTGACTGACCAAGTGTATGAAAATATATCTAAA    141
                     ||||.|..| ||    |||||..|||.||.|||||||||..||.|.|...
BPUM_0440___r     93 AGAAACGGA-CATGATGCTGAACGACAAAATGTATGAAACCATCTGTTCG    141

BSNT_00798___    142 GAATAT---------ATC--GACATTCTGCTGCTGTCTGTTAAGGACGAA    180
                     ||||||         |||  .||||    || ||.||.|   |||..||.
BPUM_0440___r    142 GAATATGTTCAACTCATCATTACAT----CT-CTTTCAG---AGGGGGAT    183

BSNT_00798___    181 AACG------CTGCTGAAAGCCAAATCAGCGAACTGGCGCTTCGAGCA--    222
                     ||.|      .||..||||   ||.|  ||.||.|...||||..|..|  
BPUM_0440___r    184 AATGAGGATTTTGAAGAAA---AAGT--GCAAAATTTTGCTTTAAAAATT    228

BSNT_00798___    223 GTCCAAATCGGACTGTCTATGAAGTTTTTGGCTACTGCGCTTGCTG-AAT    271
                     ||.|||||.||..|.||..|.|||||..||||.|..|..||..|.| |||
BPUM_0440___r    229 GTTCAAATGGGTATATCACTTAAGTTACTGGCAAACGGTCTAACGGAAAT    278

BSNT_00798___    272 TCTGGAAGCGTCTCTACAC----------GAAAATGAATGAT----AAGA    307
                     ||           .|||||          .||||||||.|||    ||||
BPUM_0440___r    279 TC-----------GTACACATTTATATGAAAAAATGAACGATGACAAAGA    317

BSNT_00798___    308 GATTGCCAGATCAAGAGAG-CACGGAATTAATCTGGCAGATTGACCGCTT    356
                     .|    ||...|||||.|| || .||..|.||.|||||.||.|||||.||
BPUM_0440___r    318 TA----CAACACAAGAAAGTCA-TGACCTCATTTGGCAAATCGACCGATT    362

BSNT_00798___    357 TTTCAGCCCGAT---TAACACAGAAATTTTTAATCAATACTCAATCTCAT    403
                     ..|||..||.||   ||||   ||.|||||.||.||.|||||.|||||||
BPUM_0440___r    363 CATCACACCCATCCATAAC---GAGATTTTAAACCAGTACTCCATCTCAT    409

BSNT_00798___    404 GGGAAAAAACAGT-ATCTCTGCAAAAAATCGCACTGCAAGAGCTGTCTGC    452
                     ||||||||||.|| |.| ||.||||||||.||.|||||.||.||.|||||
BPUM_0440___r    410 GGGAAAAAACCGTCAGC-CTTCAAAAAATTGCGCTGCAGGAACTATCTGC    458

BSNT_00798___    453 CCCGCTTATCCCGGTGTTTGAAAATATCACTGTGATGCCTCTTGTCGGAA    502
                     ||||||.|||||.||.|||||..|.|||||.||.|||||.|||||.||||
BPUM_0440___r    459 CCCGCTAATCCCAGTATTTGAGCACATCACCGTCATGCCACTTGTTGGAA    508

BSNT_00798___    503 CAATTGATACCGAACGCGCGAAACGAATTATGGAAAACCTTCTTAATGGC    552
                     ||||||||||.||.||.||||||..|||||||||.|||||.||.|||||.
BPUM_0440___r    509 CAATTGATACAGATCGTGCGAAAAAAATTATGGAGAACCTGCTCAATGGT    558

BSNT_00798___    553 GTCGTCAAACACCGTTCCCAAGTCGTGCTGATTGACATTACAGGTGTCCC    602
                     |||||||||||.||.||.||.|||||..|.|||||.||.||.|||||.||
BPUM_0440___r    559 GTCGTCAAACATCGCTCACAGGTCGTCTTAATTGATATCACGGGTGTACC    608

BSNT_00798___    603 TGTCGTCGATACGATGGTTGCCCATCATATTATTCAGGCATCAGAAGCTG    652
                     ||||||.||.||.|||||||||||.|||||.||.||.||.|||||.||||
BPUM_0440___r    609 TGTCGTGGACACAATGGTTGCCCACCATATCATACAAGCGTCAGAGGCTG    658

BSNT_00798___    653 TAAGGCTTGTCGGAGCAAAATGCCTGCTGGCCGGAATCCGTCCGGAAATT    702
                     |.||..|.||.|||||.||.||..|.||.|.|||.||.||.||.|||||.
BPUM_0440___r    659 TGAGATTAGTAGGAGCGAAGTGTTTACTTGTCGGGATTCGCCCAGAAATA    708

BSNT_00798___    703 GCTCAAACAATCGTCAACCTGGGGATTGATTTATCCCAAGTTATAACTAA    752
                     ||.|||||.|||||.|||||.||.|||||||||||.||.||||.|||.||
BPUM_0440___r    709 GCCCAAACGATCGTTAACCTTGGAATTGATTTATCTCAGGTTACAACAAA    758

BSNT_00798___    753 GAATACCCTGCAAAAAGGAATTCAAACAGCATTGGAAATGACGGATCGAA    802
                     |||||||||.|||||||||||||||||.||.|||||||||||..||||||
BPUM_0440___r    759 GAATACCCTTCAAAAAGGAATTCAAACTGCTTTGGAAATGACAAATCGAA    808

BSNT_00798___    803 AAATCGTTTCATTGGGGGAATAA    825
                     ||||.||||||||||.||.||||
BPUM_0440___r    809 AAATTGTTTCATTGGAGGGATAA    831


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00798 and BPUM_0440

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
