Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00793 and BPUM_0436
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:34
# Commandline: needle
# -asequence dna-align/BSNT_00793___ydcC.1.24716.seq
# -bsequence dna-align/BPUM_0436___ydcC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00793___ydcC-BPUM_0436___ydcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00793___ydcC-BPUM_0436___ydcC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00793___ydcC
# 2: BPUM_0436___ydcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1143
# Identity: 746/1143 (65.3%)
# Similarity: 746/1143 (65.3%)
# Gaps: 156/1143 (13.6%)
# Score: 2517.0
#
#
#=======================================
BSNT_00793___ 1 TTGAGGCTTTTATGGTACGCATCTGTTCTGCCTAAACGTGTACCGAGCGT 50
BPUM_0436___y 0 -------------------------------------------------- 0
BSNT_00793___ 51 ACCGTTAAAGTCAAACAAGCGATTTCTTCCTTTTACATCAATTGAGAAAA 100
BPUM_0436___y 0 -------------------------------------------------- 0
BSNT_00793___ 101 AGGGGTTGAAAAAGGTGAGAAAAAGCTTTGTTTTGCTTTTAACGGGACTG 150
||||||||||||||||||||||||.||||||||.|.
BPUM_0436___y 1 --------------GTGAGAAAAAGCTTTGTTTTGCTTGTAACGGGAATC 36
BSNT_00793___ 151 CTTGCTGTTCTTATTCTTTCTGCCTGCGGGCAAAAAACACAGCAAGATAT 200
|||..|||.||.|||||.||.||.|||||.||||||.|.|||.|.|||||
BPUM_0436___y 37 CTTTTTGTACTGATTCTCTCCGCATGCGGTCAAAAATCTCAGAAGGATAT 86
BSNT_00793___ 201 TGTGGCCGGGTTAGATGAAAAGGCGAAAGAATACACCTCGTACAAAGCAA 250
.||.|..|..|||.|..|||||||..|.|||...||.||.||||||||.|
BPUM_0436___y 87 CGTTGGAGATTTAAACAAAAAGGCAGAGGAAATGACATCATACAAAGCCA 136
BSNT_00793___ 251 AAGCGAAAATGACCATCGAGACAGGGAGTGAGCCTCA--AGTATACAATG 298
||||.|||||||||||.||||||||.|.|||.||.|| ||||| ||| |
BPUM_0436___y 137 AAGCAAAAATGACCATTGAGACAGGAAATGACCCGCAGGAGTAT-CAA-G 184
BSNT_00793___ 299 TGGAAATCTGGCACAAAAAGCCGTCTCTGTACAGGGTTTATTTAGAAAAT 348
|.|||||.|||.|||||||||||...||.|||.|.||.||||||||||||
BPUM_0436___y 185 TAGAAATTTGGTACAAAAAGCCGGAACTTTACCGTGTCTATTTAGAAAAT 234
BSNT_00793___ 349 CCGAAAAAGGACCAAAACCAAGTCATTTTACGAAATGAAAACGGAGTATT 398
|||||||||||.||.|..||||||||||||.||||||..||.||.||.||
BPUM_0436___y 235 CCGAAAAAGGATCAGAGTCAAGTCATTTTAAGAAATGGCAATGGTGTGTT 284
BSNT_00793___ 399 CGTTCTCACGCCGTCTTTAAATAAGAGCTTCAGATTTCAAAGCGATTGGC 448
.||.||.||.||.||.||.||.|||||||||.|.|||||.||.|||||||
BPUM_0436___y 285 TGTGCTGACACCTTCATTGAACAAGAGCTTCCGTTTTCACAGTGATTGGC 334
BSNT_00793___ 449 CGAACAACAGCAGCCAGGTTTATCTGTTTGAATCGCTCGTAAAGGATGTT 498
||||.||.|||||.|||||.||..|.|||||.||.|||||.|||||..||
BPUM_0436___y 335 CGAATAATAGCAGTCAGGTCTACTTATTTGAGTCACTCGTGAAGGACATT 384
BSNT_00793___ 499 CAAAACGATTCGGATGCAGTT---TTCACAGCGAAAGA---AAAGAAATA 542
.||||.|| |.| |||.|.| ||||.||||||.|| |||| ||
BPUM_0436___y 385 AAAAATGA--CAG-TGCTGCTCAGTTCAAAGCGAAGGATTCAAAG---TA 428
BSNT_00793___ 543 CGTATTCGAAACAAAAACAAACTATCAGCATAACAAAATGCTGCCCACGC 592
.||.||||||||.|||||.||.||||||||.|||.||||||||||.||.|
BPUM_0436___y 429 TGTGTTCGAAACCAAAACCAATTATCAGCACAACCAAATGCTGCCTACCC 478
BSNT_00793___ 593 AAGAAATCACATTTAACAAAAAAGATAT-GAGCCCGTCATCTGTCAAAGT 641
||||.||.||.|||.|.||||||...|| |.|||.|.|| .|||.|||||
BPUM_0436___y 479 AAGAGATTACCTTTCATAAAAAAACAATGGCGCCTGCCA-GTGTGAAAGT 527
BSNT_00793___ 642 GATGGATACTGACCGCAAAGTG---ATGGTCAAAGTAGAATTC-AGCAGC 687
|.||||||..|| ||||..| |||||.|||||.|||||| ..|| |
BPUM_0436___y 528 GCTGGATAGCGA---CAAAAAGCCAATGGTGAAAGTGGAATTCTCTCA-C 573
BSNT_00793___ 688 TTTGAATTTAATAAACAATTTGATAAAGAATCATTTGATGAAAAGAAAAA 737
||||||||.||||||...|||||.|||||..||||||||||.||||||||
BPUM_0436___y 574 TTTGAATTCAATAAATCCTTTGACAAAGATGCATTTGATGAGAAGAAAAA 623
BSNT_00793___ 738 TATGACCCTTTCTCAAATGGATGTCGCCACAAGCGCGAAGCCTTCCGATA 787
.|||||.||.||||||||||||||.||||||||.||..|.||.||.||.|
BPUM_0436___y 624 CATGACACTCTCTCAAATGGATGTTGCCACAAGTGCAGACCCATCTGACA 673
BSNT_00793___ 788 CATTTGCGGTCAAAACGCCGCTGGAACTGCCGCTTGGCGTCAAGCTGCTT 837
..||.||.||.||||||||..|.||..||||....||.||.||...|.|.
BPUM_0436___y 674 GCTTCGCAGTGAAAACGCCAGTTGATATGCCAGAGGGTGTGAAAAAGATG 723
BSNT_00793___ 838 GAAGAAAAAGATAT-ATCTACTGAAGACGGGAAGCGCATCA--TCATGAC 884
|||||.|||||.|| || .||.||.|.||||||||| |.| |.|||||
BPUM_0436___y 724 GAAGAGAAAGAAATGAT-GACAGATGCCGGGAAGCG--TTATGTGATGAC 770
BSNT_00793___ 885 GTACGGAGGAGAAAAATCATTTACGTTAATTCAGGAAAAAGCCCAGA-TT 933
|||.||.|||.|.|||||.||.||..|.|||||.||||||| |.||| |.
BPUM_0436___y 771 GTATGGCGGAAAGAAATCCTTCACACTCATTCAAGAAAAAG-CGAGAGTC 819
BSNT_00793___ 934 GCCAAGGCTTC--CTCCTCCGTTACGCTGAACGGCGAACCGGTAAATCTC 981
||..|.||.|| |.||| ||.||..||||.|||||.||.||..|.||.
BPUM_0436___y 820 GCTGAAGCATCTACGCCT--GTGACAATGAATGGCGAGCCAGTCGACCTT 867
BSNT_00793___ 982 GGCTACACCATCGGCGCCCTGTCGGATGCATCATTATCATGGACATATGA 1031
|||...||..|.||.|..|||.|.|||..|||..|.||||||||||.|||
BPUM_0436___y 868 GGCATGACAGTTGGGGTTCTGACAGATCAATCCCTTTCATGGACATCTGA 917
BSNT_00793___ 1032 CGGCGTAGATTACCTTCTCTCTTCTAAAGATCTTTCTAAAGAGGAAATGG 1081
|||.||.||.|||.|..|.|||||.|..|||||.||.||.||.||..|..
BPUM_0436___y 918 CGGAGTGGACTACTTGATTTCTTCAAGTGATCTATCGAAGGAAGAGCTCT 967
BSNT_00793___ 1082 TGACAGTAGCGAAAAGCATGCAG--GGACAATCATCGAAATAA 1122
|||..||.|| ||||..||.|| ||.||.|||.|.||||||
BPUM_0436___y 968 TGATGGTTGC--AAAGAGTGTAGAAGGCCAGTCAGCTAAATAA 1008
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