Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00791 and BPUM_0434
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:33
# Commandline: needle
# -asequence dna-align/BSNT_00791___ydcA.1.24716.seq
# -bsequence dna-align/BPUM_0434___ydcA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00791___ydcA-BPUM_0434___ydcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00791___ydcA-BPUM_0434___ydcA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00791___ydcA
# 2: BPUM_0434___ydcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 405/671 (60.4%)
# Similarity: 405/671 (60.4%)
# Gaps: 136/671 (20.3%)
# Score: 1095.0
#
#
#=======================================
BSNT_00791___ 1 ATGTTTATACGGACTGAAAATTTTCAAACATTTATCAGGCTTTACCCCGT 50
||||||||.||.||.||.|..||||||..||||||.||....||.||..|
BPUM_0434___y 1 ATGTTTATTCGAACGGAGAGCTTTCAACAATTTATTAGATCATATCCAAT 50
BSNT_00791___ 51 TGTCA-------CCTTTATATTGGCTTTGCAAGCTGTTCTCTGGCTGTTT 93
.|||| |||| |||||||||..||.|.|.|||||..|.
BPUM_0434___y 51 CGTCACAACGATCCTT-------GCTTTGCAATTTGGTTTATGGCTTCTA 93
BSNT_00791___ 94 TTTTCACTTCCT-GCCCATTCAGTCGTGTTATGGAG---GG--------A 131
|||.|.|||||| .||| |.||||..|| || |
BPUM_0434___y 94 TTTGCGCTTCCTATCCC---------TCTTATCCAGCTTGGTCACGACCA 134
BSNT_00791___ 132 TACCGTCACAGGCTATAATCTA-GGTGTCGCAAACGGTGAATGGTGGCGG 180
|..|||| ||.|..||| || |||||.||....||.|||||||||||.
BPUM_0434___y 135 TCTCGTC---GGTTTCAAT-TATGGTGTAGCTGCTGGAGAATGGTGGCGA 180
BSNT_00791___ 181 CTGATCACACCGATTTTGCTGCACGCCGGTTTCACACATCTGCTGTTTAA 230
||.||||||||..||||.||.||||...||.|.||.|||.|..||||.||
BPUM_0434___y 181 CTTATCACACCTGTTTTTCTTCACGGAAGTCTGACCCATATTTTGTTCAA 230
BSNT_00791___ 231 TTCCATGTCCATCTTTTTATTTGCCCCAGCTTTGGAACGCA--TGCTGGG 278
|||.|||||..|.||.|||||.||.|||||..|.|| ||| ||||.||
BPUM_0434___y 231 TTCTATGTCATTGTTCTTATTCGCTCCAGCACTTGA--GCATTTGCTTGG 278
BSNT_00791___ 279 AAAAG--------CGCATTTTCT-TCTT-GTATACGCCGGCTCCGGCATC 318
.||.| |.||||.||| |||| || ||.||.| ||
BPUM_0434___y 279 GAAGGTTCGATTTCTCATTATCTATCTTGGT----GCAGGAT------TC 318
BSNT_00791___ 319 ATCGGCAATATTGGCACTTAT---GTTACAGAGCCGCTTGATTACGTGCA 365
||.|||||..|.||.||.||| || .|||||..|.||.||.||.||
BPUM_0434___y 319 ATTGGCAACCTCGGAACCTATTGGGT---GGAGCCTTTAGAGTATGTACA 365
BSNT_00791___ 366 TGTCGGTGCTTCAGGCGCAATTTTCGGGCTATTCGGCGTGTACCTGTTTA 415
||||||.||.||.||.||.||.|||||..|.||.|||||.|| ||||
BPUM_0434___y 366 TGTCGGCGCATCTGGTGCGATCTTCGGTTTGTTTGGCGTTTA----TTTA 411
BSNT_00791___ 416 ----TGGTTCTTTTT----CGCA-ATGA------GCTAATAGGGCAGGAG 450
|.|||||.||| |||| |||| || ||||
BPUM_0434___y 412 TACCTTGTTCTATTTAAACCGCATATGATGGATCGC------GGCA---- 451
BSNT_00791___ 451 CATTCCAAAATGATCATCACACTGCTCGCATTTGCCGTTCTCATGTCATT 500
||||..|..|||||.|.||..|.| |||||| |||| ||||| |
BPUM_0434___y 452 -ATTCTCAGGTGATCTTAACGATTC------TTGCCG-TCTC-TGTCA-T 491
BSNT_00791___ 501 TA---------TCAACTCCAATATTAACATGATGGCTCATCTGTTTGGAC 541
|| |||||||.||.||.||.||.||||||||..|.||||||.
BPUM_0434___y 492 TATGACGTTCGTCAACTCAAACATCAATATCATGGCTCACTTATTTGGAT 541
BSNT_00791___ 542 T-ATGCGGCGGGTTTCT---------TCTTTCGTT--TTTGTGTGTGCAA 579
| || ||||||..|.|| ||||.||.| ||| |...|.|||
BPUM_0434___y 542 TGAT-CGGCGGCATGCTCCTAGCACCTCTTACGCTAGTTT-TCCATTCAA 589
BSNT_00791___ 580 AAAAAAGAGCGGCGGTATTAA 600
|||||||| ||.||.|||
BPUM_0434___y 590 AAAAAAGA----CGCTACTAA 606
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